Iron in PDB 5o10: Y48H Mutant of Human Cytochrome C

The structure of Y48H Mutant of Human Cytochrome C, PDB code: 5o10 was solved by T.Moreno-Chicano, O.M.Deacon, M.A.Hough, J.A.R.Worrall, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.25 / 1.36
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	56.937, 36.498, 60.700, 90.00, 116.65, 90.00
R / Rfree (%)	14.4 / 17.5

The binding sites of Iron atom in the Y48H Mutant of Human Cytochrome C (pdb code 5o10). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Y48H Mutant of Human Cytochrome C, PDB code: 5o10:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Y48H Mutant of Human Cytochrome C


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Y48H Mutant of Human Cytochrome C within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:9.8 occ:1.00 FE A:HEC201 0.0 9.8 1.0 NE2 A:HIS18 2.0 8.6 1.0 ND A:HEC201 2.0 8.7 1.0 NB A:HEC201 2.0 8.6 1.0 NC A:HEC201 2.0 9.3 1.0 NA A:HEC201 2.0 10.0 1.0 SD A:MET80 2.3 10.7 1.0 CE1 A:HIS18 2.9 8.9 1.0 C1D A:HEC201 3.0 9.9 1.0 C1B A:HEC201 3.0 10.1 1.0 C4C A:HEC201 3.0 10.1 1.0 C4A A:HEC201 3.0 9.0 1.0 C4D A:HEC201 3.0 8.6 1.0 C1C A:HEC201 3.0 8.9 1.0 C1A A:HEC201 3.0 8.3 1.0 C4B A:HEC201 3.1 8.9 1.0 CD2 A:HIS18 3.1 9.5 1.0 CE A:MET80 3.3 12.0 1.0 CG A:MET80 3.3 9.6 1.0 CHB A:HEC201 3.3 11.0 1.0 CHD A:HEC201 3.4 9.2 1.0 CHC A:HEC201 3.4 9.7 1.0 CHA A:HEC201 3.4 9.5 1.0 ND1 A:HIS18 4.1 10.2 1.0 CG A:HIS18 4.2 10.3 1.0 CB A:MET80 4.2 11.4 1.0 C2D A:HEC201 4.2 10.6 1.0 C3D A:HEC201 4.2 9.2 1.0 C2B A:HEC201 4.2 10.7 1.0 C2A A:HEC201 4.2 10.1 1.0 C2C A:HEC201 4.2 10.0 1.0 C3A A:HEC201 4.2 10.2 1.0 C3C A:HEC201 4.3 10.8 1.0 C3B A:HEC201 4.3 9.9 1.0 OH A:TYR67 4.9 13.3 1.0

Iron binding site 2 out of 2 in the Y48H Mutant of Human Cytochrome C


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Y48H Mutant of Human Cytochrome C within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:10.2 occ:1.00 FE B:HEC201 0.0 10.2 1.0 NB B:HEC201 2.0 10.1 1.0 ND B:HEC201 2.0 10.1 1.0 NA B:HEC201 2.0 10.2 1.0 NC B:HEC201 2.0 9.5 1.0 NE2 B:HIS18 2.0 10.9 1.0 SD B:MET80 2.3 10.6 1.0 CE1 B:HIS18 3.0 11.5 1.0 C1B B:HEC201 3.0 9.3 1.0 C4B B:HEC201 3.0 10.6 1.0 C1C B:HEC201 3.0 9.7 1.0 C4D B:HEC201 3.0 10.4 1.0 CD2 B:HIS18 3.0 10.8 1.0 C1D B:HEC201 3.0 9.9 1.0 C4A B:HEC201 3.0 10.7 1.0 C1A B:HEC201 3.1 10.9 1.0 C4C B:HEC201 3.1 9.8 1.0 CHB B:HEC201 3.3 10.6 1.0 CHC B:HEC201 3.4 10.5 1.0 CHD B:HEC201 3.4 9.4 1.0 CE B:MET80 3.4 12.2 1.0 CHA B:HEC201 3.4 11.4 1.0 CG B:MET80 3.4 10.1 1.0 ND1 B:HIS18 4.1 11.4 1.0 CG B:HIS18 4.2 11.8 1.0 CB B:MET80 4.2 9.4 1.0 C2B B:HEC201 4.2 9.7 1.0 C3C B:HEC201 4.2 11.4 1.0 C3A B:HEC201 4.3 10.3 1.0 C2D B:HEC201 4.3 10.2 1.0 C2C B:HEC201 4.3 10.7 1.0 C3D B:HEC201 4.3 10.5 1.0 C2A B:HEC201 4.3 11.4 1.0 C3B B:HEC201 4.3 11.1 1.0 OH B:TYR67 4.9 15.4 1.0

O.M.Deacon, A.I.Karsisiotis, T.Moreno-Chicano, M.A.Hough, C.Macdonald, T.M.A.Blumenschein, M.T.Wilson, G.R.Moore, J.A.R.Worrall. Heightened Dynamics of the Oxidized Y48H Variant of Human Cytochrome C Increases Its Peroxidatic Activity. Biochemistry V. 56 6111 2017.
ISSN: ISSN 1520-4995
PubMed: 29083920
DOI: 10.1021/ACS.BIOCHEM.7B00890