Iron in PDB 6j55: Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii
Enzymatic activity of Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii
All present enzymatic activity of Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii:
1.15.1.1;
Protein crystallography data
The structure of Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii, PDB code: 6j55
was solved by
K.H.Lee,
T.O.Dao,
K.Asaithambi,
B.K.Na,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
36.57 /
2.33
|
Space group
|
P 61
|
Cell size a, b, c (Å), α, β, γ (°)
|
127.486,
127.486,
327.064,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
20 /
24.8
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii
(pdb code 6j55). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii, PDB code: 6j55:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 6j55
Go back to
Iron Binding Sites List in 6j55
Iron binding site 1 out
of 12 in the Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:23.9
occ:1.00
|
OD2
|
A:ASP161
|
2.1
|
22.5
|
1.0
|
O
|
A:HOH348
|
2.4
|
24.1
|
1.0
|
NE2
|
A:HIS78
|
2.4
|
20.6
|
1.0
|
NE2
|
A:HIS27
|
2.4
|
22.0
|
1.0
|
NE2
|
A:HIS165
|
2.4
|
19.0
|
1.0
|
CD2
|
A:HIS78
|
3.1
|
19.3
|
1.0
|
CG
|
A:ASP161
|
3.1
|
23.6
|
1.0
|
CD2
|
A:HIS165
|
3.2
|
23.4
|
1.0
|
CD2
|
A:HIS27
|
3.3
|
16.9
|
1.0
|
CE1
|
A:HIS27
|
3.3
|
20.5
|
1.0
|
OD1
|
A:ASP161
|
3.5
|
25.9
|
1.0
|
CE1
|
A:HIS165
|
3.5
|
24.2
|
1.0
|
CE1
|
A:HIS78
|
3.5
|
22.1
|
1.0
|
CH2
|
A:TRP128
|
4.3
|
21.9
|
1.0
|
CG
|
A:HIS78
|
4.3
|
25.7
|
1.0
|
CZ2
|
A:TRP128
|
4.3
|
20.7
|
1.0
|
CB
|
A:ASP161
|
4.4
|
21.8
|
1.0
|
CG
|
A:HIS165
|
4.4
|
24.3
|
1.0
|
ND1
|
A:HIS27
|
4.4
|
23.3
|
1.0
|
CG
|
A:HIS27
|
4.4
|
25.4
|
1.0
|
ND1
|
A:HIS78
|
4.5
|
22.1
|
1.0
|
CB
|
A:TRP163
|
4.5
|
23.4
|
1.0
|
ND1
|
A:HIS165
|
4.5
|
22.6
|
1.0
|
NE2
|
A:GLN74
|
4.7
|
21.2
|
1.0
|
CG
|
A:TRP163
|
4.7
|
18.2
|
1.0
|
CB
|
A:ALA166
|
4.8
|
23.2
|
1.0
|
|
Iron binding site 2 out
of 12 in 6j55
Go back to
Iron Binding Sites List in 6j55
Iron binding site 2 out
of 12 in the Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:27.5
occ:1.00
|
OD2
|
B:ASP161
|
2.2
|
25.2
|
1.0
|
NE2
|
B:HIS78
|
2.3
|
28.7
|
1.0
|
O
|
B:HOH350
|
2.3
|
18.2
|
1.0
|
NE2
|
B:HIS165
|
2.4
|
21.5
|
1.0
|
NE2
|
B:HIS27
|
2.4
|
25.0
|
1.0
|
CD2
|
B:HIS78
|
3.1
|
26.0
|
1.0
|
CD2
|
B:HIS165
|
3.1
|
21.7
|
1.0
|
CG
|
B:ASP161
|
3.2
|
25.6
|
1.0
|
CD2
|
B:HIS27
|
3.3
|
25.2
|
1.0
|
CE1
|
B:HIS27
|
3.4
|
24.0
|
1.0
|
CE1
|
B:HIS78
|
3.4
|
21.7
|
1.0
|
CE1
|
B:HIS165
|
3.5
|
26.4
|
1.0
|
OD1
|
B:ASP161
|
3.6
|
26.8
|
1.0
|
CH2
|
B:TRP128
|
4.3
|
26.3
|
1.0
|
CG
|
B:HIS78
|
4.3
|
31.3
|
1.0
|
CZ2
|
B:TRP128
|
4.3
|
25.2
|
1.0
|
CG
|
B:HIS165
|
4.4
|
20.3
|
1.0
|
ND1
|
B:HIS78
|
4.4
|
30.7
|
1.0
|
CG
|
B:HIS27
|
4.4
|
26.1
|
1.0
|
CB
|
B:ASP161
|
4.4
|
23.2
|
1.0
|
ND1
|
B:HIS27
|
4.4
|
24.3
|
1.0
|
CB
|
B:TRP163
|
4.5
|
23.1
|
1.0
|
ND1
|
B:HIS165
|
4.5
|
20.6
|
1.0
|
CG
|
B:TRP163
|
4.7
|
22.1
|
1.0
|
NE2
|
B:GLN74
|
4.9
|
23.6
|
1.0
|
CB
|
B:ALA166
|
4.9
|
22.9
|
1.0
|
|
Iron binding site 3 out
of 12 in 6j55
Go back to
Iron Binding Sites List in 6j55
Iron binding site 3 out
of 12 in the Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:24.0
occ:1.00
|
OD2
|
C:ASP161
|
2.1
|
26.4
|
1.0
|
NE2
|
C:HIS27
|
2.3
|
23.1
|
1.0
|
NE2
|
C:HIS165
|
2.4
|
21.7
|
1.0
|
NE2
|
C:HIS78
|
2.4
|
18.9
|
1.0
|
O
|
C:HOH340
|
2.5
|
23.0
|
1.0
|
CD2
|
C:HIS78
|
3.0
|
17.0
|
1.0
|
CG
|
C:ASP161
|
3.1
|
26.5
|
1.0
|
CD2
|
C:HIS165
|
3.2
|
18.6
|
1.0
|
CE1
|
C:HIS27
|
3.3
|
24.4
|
1.0
|
CD2
|
C:HIS27
|
3.3
|
18.6
|
1.0
|
CE1
|
C:HIS165
|
3.4
|
22.8
|
1.0
|
OD1
|
C:ASP161
|
3.4
|
22.9
|
1.0
|
CE1
|
C:HIS78
|
3.5
|
21.9
|
1.0
|
CZ2
|
C:TRP128
|
4.2
|
20.0
|
1.0
|
CH2
|
C:TRP128
|
4.2
|
19.7
|
1.0
|
CG
|
C:HIS78
|
4.3
|
25.4
|
1.0
|
CB
|
C:ASP161
|
4.4
|
20.6
|
1.0
|
ND1
|
C:HIS27
|
4.4
|
20.2
|
1.0
|
CG
|
C:HIS165
|
4.4
|
24.0
|
1.0
|
CG
|
C:HIS27
|
4.4
|
19.5
|
1.0
|
CB
|
C:TRP163
|
4.4
|
20.8
|
1.0
|
ND1
|
C:HIS78
|
4.5
|
23.7
|
1.0
|
ND1
|
C:HIS165
|
4.5
|
24.9
|
1.0
|
CG
|
C:TRP163
|
4.7
|
22.6
|
1.0
|
CB
|
C:ALA166
|
4.8
|
20.9
|
1.0
|
NE2
|
C:GLN74
|
4.8
|
18.7
|
1.0
|
CD1
|
C:TRP163
|
4.9
|
19.4
|
1.0
|
|
Iron binding site 4 out
of 12 in 6j55
Go back to
Iron Binding Sites List in 6j55
Iron binding site 4 out
of 12 in the Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:26.5
occ:1.00
|
OD1
|
D:ASP161
|
2.1
|
24.2
|
1.0
|
NE2
|
D:HIS165
|
2.3
|
19.8
|
1.0
|
O
|
D:HOH374
|
2.4
|
24.3
|
1.0
|
NE2
|
D:HIS78
|
2.4
|
26.5
|
1.0
|
NE2
|
D:HIS27
|
2.4
|
24.1
|
1.0
|
CD2
|
D:HIS78
|
3.1
|
23.9
|
1.0
|
CD2
|
D:HIS165
|
3.1
|
17.2
|
1.0
|
CG
|
D:ASP161
|
3.2
|
27.2
|
1.0
|
CD2
|
D:HIS27
|
3.3
|
20.4
|
1.0
|
CE1
|
D:HIS165
|
3.4
|
21.8
|
1.0
|
CE1
|
D:HIS27
|
3.4
|
21.5
|
1.0
|
CE1
|
D:HIS78
|
3.4
|
23.7
|
1.0
|
OD2
|
D:ASP161
|
3.6
|
28.1
|
1.0
|
CZ2
|
D:TRP128
|
4.3
|
23.3
|
1.0
|
CG
|
D:HIS78
|
4.3
|
23.8
|
1.0
|
CG
|
D:HIS165
|
4.3
|
20.9
|
1.0
|
CH2
|
D:TRP128
|
4.4
|
22.2
|
1.0
|
CB
|
D:TRP163
|
4.4
|
23.5
|
1.0
|
ND1
|
D:HIS165
|
4.4
|
22.2
|
1.0
|
ND1
|
D:HIS78
|
4.4
|
25.7
|
1.0
|
CB
|
D:ASP161
|
4.4
|
21.4
|
1.0
|
ND1
|
D:HIS27
|
4.5
|
23.1
|
1.0
|
CG
|
D:HIS27
|
4.5
|
22.2
|
1.0
|
CG
|
D:TRP163
|
4.7
|
21.9
|
1.0
|
CB
|
D:ALA166
|
4.8
|
25.4
|
1.0
|
NE2
|
D:GLN74
|
4.9
|
23.6
|
1.0
|
|
Iron binding site 5 out
of 12 in 6j55
Go back to
Iron Binding Sites List in 6j55
Iron binding site 5 out
of 12 in the Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe201
b:30.7
occ:1.00
|
O
|
E:HOH317
|
2.1
|
29.7
|
1.0
|
NE2
|
E:HIS78
|
2.3
|
26.9
|
1.0
|
OD2
|
E:ASP161
|
2.3
|
38.4
|
1.0
|
NE2
|
E:HIS165
|
2.4
|
33.0
|
1.0
|
NE2
|
E:HIS27
|
2.4
|
37.1
|
1.0
|
CD2
|
E:HIS78
|
2.9
|
28.5
|
1.0
|
CE1
|
E:HIS165
|
3.3
|
31.1
|
1.0
|
CG
|
E:ASP161
|
3.3
|
34.1
|
1.0
|
CE1
|
E:HIS27
|
3.3
|
35.5
|
1.0
|
CD2
|
E:HIS27
|
3.3
|
36.1
|
1.0
|
CD2
|
E:HIS165
|
3.3
|
33.6
|
1.0
|
CE1
|
E:HIS78
|
3.4
|
32.8
|
1.0
|
OD1
|
E:ASP161
|
3.8
|
37.1
|
1.0
|
CG
|
E:HIS78
|
4.2
|
32.2
|
1.0
|
CZ2
|
E:TRP128
|
4.3
|
33.0
|
1.0
|
CH2
|
E:TRP128
|
4.4
|
32.3
|
1.0
|
ND1
|
E:HIS27
|
4.4
|
37.3
|
1.0
|
ND1
|
E:HIS165
|
4.4
|
36.5
|
1.0
|
ND1
|
E:HIS78
|
4.4
|
28.5
|
1.0
|
CB
|
E:ASP161
|
4.4
|
33.4
|
1.0
|
CG
|
E:HIS27
|
4.4
|
39.0
|
1.0
|
CG
|
E:HIS165
|
4.5
|
34.9
|
1.0
|
CB
|
E:TRP163
|
4.7
|
28.7
|
1.0
|
CG
|
E:TRP163
|
4.8
|
33.1
|
1.0
|
CB
|
E:ALA166
|
5.0
|
27.8
|
1.0
|
NE2
|
E:GLN74
|
5.0
|
30.6
|
1.0
|
|
Iron binding site 6 out
of 12 in 6j55
Go back to
Iron Binding Sites List in 6j55
Iron binding site 6 out
of 12 in the Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe201
b:33.0
occ:1.00
|
OD2
|
F:ASP161
|
2.2
|
38.1
|
1.0
|
NE2
|
F:HIS78
|
2.2
|
26.6
|
1.0
|
NE2
|
F:HIS165
|
2.4
|
39.1
|
1.0
|
NE2
|
F:HIS27
|
2.4
|
39.1
|
1.0
|
O
|
F:HOH329
|
2.4
|
32.3
|
1.0
|
CD2
|
F:HIS78
|
3.0
|
31.7
|
1.0
|
CG
|
F:ASP161
|
3.2
|
34.9
|
1.0
|
CE1
|
F:HIS78
|
3.3
|
31.1
|
1.0
|
CE1
|
F:HIS165
|
3.3
|
35.9
|
1.0
|
CD2
|
F:HIS27
|
3.3
|
35.0
|
1.0
|
CE1
|
F:HIS27
|
3.4
|
34.7
|
1.0
|
CD2
|
F:HIS165
|
3.4
|
39.3
|
1.0
|
OD1
|
F:ASP161
|
3.8
|
35.3
|
1.0
|
CG
|
F:HIS78
|
4.2
|
33.9
|
1.0
|
CB
|
F:ASP161
|
4.3
|
37.3
|
1.0
|
CH2
|
F:TRP128
|
4.3
|
34.1
|
1.0
|
ND1
|
F:HIS78
|
4.3
|
31.7
|
1.0
|
CZ2
|
F:TRP128
|
4.4
|
29.6
|
1.0
|
CB
|
F:TRP163
|
4.4
|
30.8
|
1.0
|
ND1
|
F:HIS165
|
4.5
|
38.9
|
1.0
|
ND1
|
F:HIS27
|
4.5
|
43.1
|
1.0
|
CG
|
F:HIS27
|
4.5
|
41.9
|
1.0
|
CG
|
F:HIS165
|
4.5
|
37.5
|
1.0
|
CG
|
F:TRP163
|
4.7
|
33.1
|
1.0
|
CB
|
F:ALA166
|
4.9
|
37.6
|
1.0
|
NE2
|
F:GLN74
|
4.9
|
34.3
|
1.0
|
CD1
|
F:TRP163
|
4.9
|
32.6
|
1.0
|
|
Iron binding site 7 out
of 12 in 6j55
Go back to
Iron Binding Sites List in 6j55
Iron binding site 7 out
of 12 in the Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe201
b:37.8
occ:1.00
|
OD2
|
G:ASP161
|
2.1
|
38.2
|
1.0
|
NE2
|
G:HIS78
|
2.3
|
26.4
|
1.0
|
NE2
|
G:HIS165
|
2.3
|
41.2
|
1.0
|
O
|
G:HOH329
|
2.3
|
36.0
|
1.0
|
NE2
|
G:HIS27
|
2.5
|
40.4
|
1.0
|
CD2
|
G:HIS78
|
3.1
|
31.1
|
1.0
|
CD2
|
G:HIS165
|
3.1
|
40.3
|
1.0
|
CG
|
G:ASP161
|
3.2
|
42.9
|
1.0
|
CE1
|
G:HIS78
|
3.3
|
37.0
|
1.0
|
CE1
|
G:HIS27
|
3.3
|
39.9
|
1.0
|
CE1
|
G:HIS165
|
3.4
|
38.6
|
1.0
|
CD2
|
G:HIS27
|
3.4
|
39.3
|
1.0
|
OD1
|
G:ASP161
|
3.8
|
37.0
|
1.0
|
CG
|
G:HIS78
|
4.3
|
30.7
|
1.0
|
CG
|
G:HIS165
|
4.3
|
41.5
|
1.0
|
CZ2
|
G:TRP128
|
4.3
|
42.1
|
1.0
|
ND1
|
G:HIS78
|
4.3
|
32.3
|
1.0
|
CB
|
G:ASP161
|
4.4
|
39.4
|
1.0
|
ND1
|
G:HIS165
|
4.4
|
43.8
|
1.0
|
ND1
|
G:HIS27
|
4.4
|
43.9
|
1.0
|
CB
|
G:TRP163
|
4.5
|
37.8
|
1.0
|
CH2
|
G:TRP128
|
4.5
|
38.3
|
1.0
|
CG
|
G:HIS27
|
4.5
|
41.2
|
1.0
|
CG
|
G:TRP163
|
4.7
|
39.6
|
1.0
|
CB
|
G:ALA166
|
4.7
|
35.4
|
1.0
|
NE2
|
G:GLN74
|
4.9
|
36.5
|
1.0
|
CD1
|
G:TRP163
|
5.0
|
34.6
|
1.0
|
|
Iron binding site 8 out
of 12 in 6j55
Go back to
Iron Binding Sites List in 6j55
Iron binding site 8 out
of 12 in the Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe201
b:38.9
occ:1.00
|
OD2
|
H:ASP161
|
2.1
|
30.1
|
1.0
|
NE2
|
H:HIS78
|
2.4
|
30.4
|
1.0
|
NE2
|
H:HIS27
|
2.4
|
35.9
|
1.0
|
NE2
|
H:HIS165
|
2.4
|
34.6
|
1.0
|
O
|
H:HOH335
|
2.5
|
33.8
|
1.0
|
CD2
|
H:HIS78
|
3.0
|
36.8
|
1.0
|
CE1
|
H:HIS27
|
3.2
|
36.4
|
1.0
|
CD2
|
H:HIS165
|
3.2
|
38.3
|
1.0
|
CG
|
H:ASP161
|
3.2
|
39.5
|
1.0
|
CD2
|
H:HIS27
|
3.3
|
33.4
|
1.0
|
CE1
|
H:HIS78
|
3.5
|
35.9
|
1.0
|
CE1
|
H:HIS165
|
3.5
|
36.1
|
1.0
|
OD1
|
H:ASP161
|
3.7
|
38.7
|
1.0
|
ND1
|
H:HIS27
|
4.3
|
39.4
|
1.0
|
CG
|
H:HIS78
|
4.3
|
40.1
|
1.0
|
CH2
|
H:TRP128
|
4.3
|
43.0
|
1.0
|
CB
|
H:TRP163
|
4.3
|
30.1
|
1.0
|
CZ2
|
H:TRP128
|
4.3
|
39.5
|
1.0
|
CG
|
H:HIS27
|
4.4
|
41.5
|
1.0
|
CB
|
H:ASP161
|
4.4
|
30.8
|
1.0
|
CG
|
H:HIS165
|
4.4
|
34.0
|
1.0
|
ND1
|
H:HIS78
|
4.4
|
37.0
|
1.0
|
ND1
|
H:HIS165
|
4.5
|
37.8
|
1.0
|
CG
|
H:TRP163
|
4.5
|
37.1
|
1.0
|
CB
|
H:ALA166
|
4.7
|
33.0
|
1.0
|
CD1
|
H:TRP163
|
4.9
|
40.5
|
1.0
|
NE2
|
H:GLN74
|
4.9
|
37.3
|
1.0
|
|
Iron binding site 9 out
of 12 in 6j55
Go back to
Iron Binding Sites List in 6j55
Iron binding site 9 out
of 12 in the Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe201
b:40.2
occ:1.00
|
OD2
|
I:ASP161
|
2.2
|
36.8
|
1.0
|
NE2
|
I:HIS165
|
2.4
|
42.5
|
1.0
|
NE2
|
I:HIS78
|
2.4
|
40.0
|
1.0
|
O
|
I:HOH333
|
2.5
|
38.6
|
1.0
|
NE2
|
I:HIS27
|
2.6
|
39.4
|
1.0
|
CD2
|
I:HIS78
|
3.0
|
37.0
|
1.0
|
CD2
|
I:HIS165
|
3.2
|
44.8
|
1.0
|
CD2
|
I:HIS27
|
3.2
|
46.3
|
1.0
|
CG
|
I:ASP161
|
3.3
|
43.7
|
1.0
|
CE1
|
I:HIS165
|
3.4
|
43.1
|
1.0
|
CE1
|
I:HIS78
|
3.6
|
44.2
|
1.0
|
CE1
|
I:HIS27
|
3.7
|
46.6
|
1.0
|
OD1
|
I:ASP161
|
3.8
|
39.3
|
1.0
|
CG
|
I:HIS78
|
4.3
|
46.5
|
1.0
|
CH2
|
I:TRP128
|
4.3
|
40.0
|
1.0
|
CG
|
I:HIS165
|
4.4
|
43.5
|
1.0
|
CZ2
|
I:TRP128
|
4.5
|
37.8
|
1.0
|
ND1
|
I:HIS165
|
4.5
|
44.8
|
1.0
|
CB
|
I:ASP161
|
4.5
|
38.6
|
1.0
|
ND1
|
I:HIS78
|
4.5
|
46.5
|
1.0
|
CG
|
I:HIS27
|
4.5
|
46.6
|
1.0
|
CB
|
I:TRP163
|
4.6
|
44.1
|
1.0
|
ND1
|
I:HIS27
|
4.7
|
49.0
|
1.0
|
CB
|
I:ALA166
|
4.8
|
43.1
|
1.0
|
CG
|
I:TRP163
|
4.9
|
43.3
|
1.0
|
|
Iron binding site 10 out
of 12 in 6j55
Go back to
Iron Binding Sites List in 6j55
Iron binding site 10 out
of 12 in the Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of An Iron Superoxide Dismutate (Fesod) From A Pathogenic Acanthamoeba Castellanii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe201
b:51.3
occ:1.00
|
OD2
|
J:ASP161
|
2.2
|
48.6
|
1.0
|
NE2
|
J:HIS165
|
2.4
|
45.5
|
1.0
|
NE2
|
J:HIS78
|
2.6
|
57.2
|
1.0
|
CE1
|
J:HIS27
|
2.6
|
54.5
|
1.0
|
CD2
|
J:HIS78
|
2.9
|
52.5
|
1.0
|
CD2
|
J:HIS165
|
3.2
|
49.0
|
1.0
|
CG
|
J:ASP161
|
3.2
|
48.2
|
1.0
|
ND1
|
J:HIS27
|
3.5
|
53.0
|
1.0
|
NE2
|
J:HIS27
|
3.6
|
58.5
|
1.0
|
CE1
|
J:HIS165
|
3.6
|
48.1
|
1.0
|
OD1
|
J:ASP161
|
3.7
|
47.0
|
1.0
|
CE1
|
J:HIS78
|
3.9
|
55.2
|
1.0
|
CH2
|
J:TRP128
|
4.2
|
48.7
|
1.0
|
CG
|
J:HIS78
|
4.3
|
59.6
|
1.0
|
CZ2
|
J:TRP128
|
4.3
|
51.4
|
1.0
|
CB
|
J:TRP163
|
4.4
|
41.5
|
1.0
|
CG
|
J:HIS165
|
4.4
|
51.0
|
1.0
|
CB
|
J:ASP161
|
4.5
|
47.4
|
1.0
|
ND1
|
J:HIS165
|
4.6
|
45.1
|
1.0
|
CG
|
J:TRP163
|
4.6
|
44.5
|
1.0
|
CB
|
J:ALA166
|
4.7
|
46.8
|
1.0
|
ND1
|
J:HIS78
|
4.7
|
59.0
|
1.0
|
CG
|
J:HIS27
|
4.7
|
61.0
|
1.0
|
CD2
|
J:HIS27
|
4.7
|
58.4
|
1.0
|
CD1
|
J:TRP163
|
5.0
|
42.8
|
1.0
|
|
Reference:
O.Dao,
K.Asaithambi,
B.K.Na,
K.H.Lee.
Crystal Structure of An Iron Superoxide Dismutase From the Pathogenic Amoeba Acanthamoeba Castellanii. Acta Crystallogr.,Sect.F V. 75 480 2019.
ISSN: ESSN 2053-230X
PubMed: 31282867
DOI: 10.1107/S2053230X19008112
Page generated: Tue Aug 6 23:17:25 2024
|