Iron in PDB 6joa: Crystal Structure of Kate From Atypical Escherichia Coli

All present enzymatic activity of Crystal Structure of Kate From Atypical Escherichia Coli:
1.11.1.6;

The structure of Crystal Structure of Kate From Atypical Escherichia Coli, PDB code: 6joa was solved by J.B.Park, H.-S.Cho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	89.10 / 2.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	76.730, 178.800, 107.390, 90.00, 106.79, 90.00
R / Rfree (%)	17.1 / 21.7

The binding sites of Iron atom in the Crystal Structure of Kate From Atypical Escherichia Coli (pdb code 6joa). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Kate From Atypical Escherichia Coli, PDB code: 6joa:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of Kate From Atypical Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Kate From Atypical Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe801 b:15.8 occ:1.00 FE A:HEM801 0.0 15.8 1.0 ND A:HEM801 1.9 15.0 1.0 OH A:TYR415 2.0 18.8 1.0 NA A:HEM801 2.0 14.8 1.0 NC A:HEM801 2.1 15.4 1.0 NB A:HEM801 2.1 15.9 1.0 C1D A:HEM801 3.0 15.2 1.0 C4D A:HEM801 3.0 14.6 1.0 CZ A:TYR415 3.0 17.5 1.0 C1A A:HEM801 3.0 15.2 1.0 C4C A:HEM801 3.0 16.3 1.0 C4A A:HEM801 3.0 15.7 1.0 C4B A:HEM801 3.1 16.4 1.0 C1C A:HEM801 3.1 16.0 1.0 C1B A:HEM801 3.1 16.6 1.0 CHD A:HEM801 3.4 15.2 1.0 CHA A:HEM801 3.4 14.6 1.0 CHC A:HEM801 3.4 15.8 1.0 CHB A:HEM801 3.5 16.2 1.0 CE2 A:TYR415 3.6 17.5 1.0 CE1 A:TYR415 3.9 18.0 1.0 NH2 A:ARG411 4.1 15.1 1.0 NE A:ARG411 4.2 17.4 1.0 C2A A:HEM801 4.2 15.2 1.0 C3A A:HEM801 4.2 15.4 1.0 C2D A:HEM801 4.2 15.4 1.0 C2C A:HEM801 4.3 16.1 1.0 C3C A:HEM801 4.3 16.3 1.0 C3D A:HEM801 4.3 15.6 1.0 C2B A:HEM801 4.3 17.9 1.0 C3B A:HEM801 4.4 17.4 1.0 O A:HOH1017 4.4 22.9 1.0 CZ A:ARG411 4.5 16.5 1.0 CZ A:PHE214 4.6 16.0 1.0 CG2 A:VAL127 4.7 13.1 1.0 NE2 A:HIS128 4.7 13.2 1.0 CD2 A:HIS128 4.8 13.1 1.0 CD2 A:TYR415 4.9 17.3 1.0

Iron binding site 2 out of 4 in the Crystal Structure of Kate From Atypical Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Kate From Atypical Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe801 b:15.2 occ:1.00 FE C:HEM801 0.0 15.2 1.0 ND C:HEM801 1.9 16.1 1.0 OH C:TYR415 2.0 12.6 1.0 NA C:HEM801 2.0 16.5 1.0 NC C:HEM801 2.1 18.1 1.0 NB C:HEM801 2.1 17.7 1.0 O C:HOH1054 2.7 33.2 1.0 CZ C:TYR415 2.9 12.8 1.0 C1D C:HEM801 3.0 15.9 1.0 C4D C:HEM801 3.0 15.8 1.0 C1A C:HEM801 3.0 15.6 1.0 C4C C:HEM801 3.0 18.7 1.0 C4B C:HEM801 3.1 17.0 1.0 C4A C:HEM801 3.1 16.5 1.0 C1B C:HEM801 3.1 17.5 1.0 C1C C:HEM801 3.1 18.4 1.0 CHD C:HEM801 3.4 16.9 1.0 CHA C:HEM801 3.4 15.7 1.0 CHC C:HEM801 3.4 17.5 1.0 CHB C:HEM801 3.5 16.5 1.0 CE2 C:TYR415 3.6 13.2 1.0 CE1 C:TYR415 3.9 13.5 1.0 NE C:ARG411 4.1 16.5 1.0 NH2 C:ARG411 4.1 15.7 1.0 C2A C:HEM801 4.2 15.6 1.0 C3A C:HEM801 4.2 15.2 1.0 C2D C:HEM801 4.2 15.9 1.0 C3C C:HEM801 4.3 18.5 1.0 C3D C:HEM801 4.3 15.8 1.0 C2C C:HEM801 4.3 18.1 1.0 O C:HOH1092 4.3 30.6 1.0 C2B C:HEM801 4.3 17.9 1.0 C3B C:HEM801 4.4 18.4 1.0 CZ C:ARG411 4.4 16.2 1.0 NE2 C:HIS128 4.6 14.8 1.0 CZ C:PHE214 4.6 19.3 1.0 CG2 C:VAL127 4.7 12.5 1.0 CD2 C:HIS128 4.8 14.1 1.0 CD2 C:TYR415 4.8 13.1 1.0

Iron binding site 3 out of 4 in the Crystal Structure of Kate From Atypical Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Kate From Atypical Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe801 b:15.1 occ:1.00 FE B:HEM801 0.0 15.1 1.0 OH B:TYR415 1.9 12.1 1.0 ND B:HEM801 1.9 13.8 1.0 NA B:HEM801 2.0 13.0 1.0 NC B:HEM801 2.0 13.1 1.0 NB B:HEM801 2.1 14.4 1.0 CZ B:TYR415 2.9 14.3 1.0 C1D B:HEM801 2.9 13.8 1.0 C4D B:HEM801 2.9 13.8 1.0 C1A B:HEM801 3.0 12.6 1.0 C4C B:HEM801 3.0 13.7 1.0 C4A B:HEM801 3.0 13.8 1.0 C4B B:HEM801 3.1 14.8 1.0 C1B B:HEM801 3.1 14.9 1.0 C1C B:HEM801 3.1 15.0 1.0 CHA B:HEM801 3.4 13.3 1.0 CHD B:HEM801 3.4 13.3 1.0 CHB B:HEM801 3.4 14.3 1.0 CHC B:HEM801 3.5 15.2 1.0 CE2 B:TYR415 3.6 14.7 1.0 CE1 B:TYR415 3.9 14.3 1.0 NE B:ARG411 4.1 16.7 1.0 C2A B:HEM801 4.2 11.8 1.0 C3A B:HEM801 4.2 13.3 1.0 NH2 B:ARG411 4.2 17.7 1.0 C2D B:HEM801 4.2 14.8 1.0 C3C B:HEM801 4.2 13.8 1.0 C3D B:HEM801 4.2 14.5 1.0 C2C B:HEM801 4.3 13.8 1.0 C2B B:HEM801 4.3 16.0 1.0 C3B B:HEM801 4.4 15.7 1.0 CZ B:ARG411 4.5 17.6 1.0 CG2 B:VAL127 4.6 13.9 1.0 O B:HOH1012 4.6 16.8 1.0 NE2 B:HIS128 4.6 11.9 1.0 CZ B:PHE214 4.7 15.5 1.0 CD2 B:HIS128 4.8 11.7 1.0 CD2 B:TYR415 4.8 16.1 1.0

Iron binding site 4 out of 4 in the Crystal Structure of Kate From Atypical Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Kate From Atypical Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe801 b:16.6 occ:1.00 FE D:HEM801 0.0 16.6 1.0 OH D:TYR415 1.9 19.8 1.0 ND D:HEM801 2.0 16.9 1.0 NA D:HEM801 2.0 15.1 1.0 NC D:HEM801 2.0 16.5 1.0 NB D:HEM801 2.1 16.8 1.0 CZ D:TYR415 2.9 17.9 1.0 C1D D:HEM801 2.9 16.6 1.0 C4C D:HEM801 3.0 17.5 1.0 C4D D:HEM801 3.0 15.7 1.0 C1A D:HEM801 3.0 15.3 1.0 C4A D:HEM801 3.0 15.7 1.0 C4B D:HEM801 3.1 16.5 1.0 C1B D:HEM801 3.1 16.2 1.0 C1C D:HEM801 3.1 16.5 1.0 CHD D:HEM801 3.3 17.0 1.0 CHB D:HEM801 3.4 15.7 1.0 CHA D:HEM801 3.5 15.7 1.0 CHC D:HEM801 3.5 15.9 1.0 CE2 D:TYR415 3.6 17.9 1.0 CE1 D:TYR415 3.8 17.9 1.0 NE D:ARG411 4.1 18.5 1.0 NH2 D:ARG411 4.2 17.5 1.0 C2D D:HEM801 4.2 18.5 1.0 C3C D:HEM801 4.2 16.9 1.0 C2A D:HEM801 4.2 14.4 1.0 C3A D:HEM801 4.3 14.4 1.0 C3D D:HEM801 4.3 18.0 1.0 C2C D:HEM801 4.3 15.7 1.0 C2B D:HEM801 4.3 16.9 1.0 C3B D:HEM801 4.3 17.4 1.0 O D:HOH1023 4.5 34.3 1.0 CZ D:ARG411 4.5 17.7 1.0 CG2 D:VAL127 4.6 14.4 1.0 NE2 D:HIS128 4.7 16.5 1.0 CZ D:PHE214 4.7 14.2 1.0 CD2 D:HIS128 4.8 15.0 1.0 CD2 D:TYR415 4.9 17.9 1.0 CD1 D:TYR415 5.0 19.2 1.0

M.Y.Yoon, K.B.Min, K.M.Lee, Y.Yoon, Y.Kim, Y.T.Oh, K.Lee, J.Chun, B.Y.Kim, S.H.Yoon, I.Lee, C.Y.Kim, S.S.Yoon. A Single Gene of A Commensal Microbe Affects Host Susceptibility to Enteric Infection. Nat Commun V. 7 11606 2016.
ISSN: ESSN 2041-1723
PubMed: 27173141
DOI: 10.1038/NCOMMS11606