Iron in PDB 6tjv: Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus

Other elements in 6tjv:

The structure of Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus (pdb code 6tjv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus, PDB code: 6tjv:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 6tjv

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Iron binding site 1 out of 12 in the Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus


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Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:36.8
occ:1.00
 FE1 I:SF4201 0.0 36.8 1.0
S3 I:SF4201 2.3 36.8 1.0
S2 I:SF4201 2.3 36.8 1.0
S4 I:SF4201 2.3 36.8 1.0
FE3 I:SF4201 2.7 36.8 1.0
FE2 I:SF4201 2.7 36.8 1.0
FE4 I:SF4201 2.7 36.8 1.0
SG I:CYS103 2.8 40.3 1.0
S1 I:SF4201 3.9 36.8 1.0
CB I:CYS103 4.2 40.3 1.0
N I:ILE104 4.3 41.2 1.0
CA I:CYS103 4.5 40.3 1.0
N I:PHE105 4.5 43.5 1.0
CD2 I:LEU77 4.6 40.2 1.0
CG2 I:ILE104 4.8 41.2 1.0
CG2 I:ILE98 4.9 42.4 1.0
SG I:CYS109 4.9 40.7 1.0
SG I:CYS73 5.0 39.2 1.0
C I:CYS103 5.0 40.3 1.0
CD1 I:ILE98 5.0 42.4 1.0

Iron binding site 2 out of 12 in 6tjv

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Iron binding site 2 out of 12 in the Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus


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Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:36.8
occ:1.00
 FE2 I:SF4201 0.0 36.8 1.0
S1 I:SF4201 2.3 36.8 1.0
S4 I:SF4201 2.3 36.8 1.0
S3 I:SF4201 2.3 36.8 1.0
FE1 I:SF4201 2.7 36.8 1.0
FE3 I:SF4201 2.7 36.8 1.0
FE4 I:SF4201 2.7 36.8 1.0
SG I:CYS109 2.7 40.7 1.0
CB I:CYS109 3.1 40.7 1.0
N I:CYS109 3.5 40.7 1.0
S2 I:SF4201 3.9 36.8 1.0
CA I:CYS109 3.9 40.7 1.0
CA I:ALA107 4.0 43.0 1.0
N I:ALA107 4.0 43.0 1.0
N I:ASN108 4.1 42.5 1.0
C I:ALA107 4.4 43.0 1.0
C I:ASN108 4.6 42.5 1.0
N I:VAL110 4.8 45.2 1.0
CD1 I:ILE56 4.8 47.3 1.0
SG I:CYS106 4.8 42.5 1.0
CA I:ASN108 4.9 42.5 1.0
C I:CYS109 4.9 40.7 1.0

Iron binding site 3 out of 12 in 6tjv

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Iron binding site 3 out of 12 in the Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:36.8
occ:1.00
 FE3 I:SF4201 0.0 36.8 1.0
S1 I:SF4201 2.3 36.8 1.0
S4 I:SF4201 2.3 36.8 1.0
S2 I:SF4201 2.3 36.8 1.0
FE4 I:SF4201 2.7 36.8 1.0
FE1 I:SF4201 2.7 36.8 1.0
FE2 I:SF4201 2.7 36.8 1.0
SG I:CYS73 2.8 39.2 1.0
CB I:CYS73 3.2 39.2 1.0
CA I:CYS73 3.7 39.2 1.0
S3 I:SF4201 3.9 36.8 1.0
CD I:PRO74 4.2 40.6 1.0
CD I:PRO78 4.3 39.9 1.0
CB I:CYS109 4.5 40.7 1.0
CB I:LEU77 4.6 40.2 1.0
N I:PRO74 4.6 40.6 1.0
C I:CYS73 4.6 39.2 1.0
O I:CYS69 4.7 42.9 1.0
N I:CYS73 4.8 39.2 1.0
N I:CYS109 4.9 40.7 1.0
SG I:CYS109 4.9 40.7 1.0
SG I:CYS106 5.0 42.5 1.0
N I:LEU77 5.0 40.2 1.0

Iron binding site 4 out of 12 in 6tjv

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Iron binding site 4 out of 12 in the Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:36.8
occ:1.00
 FE4 I:SF4201 0.0 36.8 1.0
S2 I:SF4201 2.3 36.8 1.0
S1 I:SF4201 2.3 36.8 1.0
S3 I:SF4201 2.3 36.8 1.0
FE3 I:SF4201 2.7 36.8 1.0
FE2 I:SF4201 2.7 36.8 1.0
FE1 I:SF4201 2.7 36.8 1.0
SG I:CYS106 2.9 42.5 1.0
CG2 I:ILE104 3.2 41.2 1.0
N I:CYS106 3.6 42.5 1.0
N I:ALA107 3.8 43.0 1.0
S4 I:SF4201 3.9 36.8 1.0
CB I:CYS106 4.0 42.5 1.0
CD I:PRO74 4.1 40.6 1.0
N I:PHE105 4.1 43.5 1.0
CA I:CYS106 4.2 42.5 1.0
C I:CYS106 4.3 42.5 1.0
CB I:ILE104 4.5 41.2 1.0
N I:ASN108 4.5 42.5 1.0
N I:ILE104 4.6 41.2 1.0
C I:PHE105 4.6 43.5 1.0
SG I:CYS103 4.6 40.3 1.0
CA I:ALA107 4.7 43.0 1.0
CA I:PHE105 4.7 43.5 1.0
C I:ILE104 4.7 41.2 1.0
CG I:PRO74 4.8 40.6 1.0
CA I:ILE104 4.8 41.2 1.0
SG I:CYS73 4.8 39.2 1.0

Iron binding site 5 out of 12 in 6tjv

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Iron binding site 5 out of 12 in the Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:52.5
occ:1.00
 FE1 I:SF4202 0.0 52.5 1.0
S4 I:SF4202 2.3 52.5 1.0
S3 I:SF4202 2.3 52.5 1.0
S2 I:SF4202 2.3 52.5 1.0
FE3 I:SF4202 2.7 52.5 1.0
FE4 I:SF4202 2.7 52.5 1.0
FE2 I:SF4202 2.7 52.5 1.0
SG I:CYS66 2.9 48.5 1.0
N I:GLU67 3.3 48.5 1.0
N I:CYS66 3.4 48.5 1.0
S1 I:SF4202 3.9 52.5 1.0
N I:VAL68 3.9 43.5 1.0
C I:CYS66 3.9 48.5 1.0
CA I:CYS66 3.9 48.5 1.0
CB I:CYS66 4.0 48.5 1.0
CA I:GLU67 4.2 48.5 1.0
N I:ALA65 4.4 52.6 1.0
C I:ALA65 4.4 52.6 1.0
CA I:ALA65 4.5 52.6 1.0
C I:GLU67 4.5 48.5 1.0
SG I:CYS69 4.5 42.9 1.0
N I:CYS69 4.6 42.9 1.0
CD I:PRO114 4.7 45.7 1.0
CB I:VAL68 4.9 43.5 1.0
CA I:VAL68 4.9 43.5 1.0
O I:CYS66 4.9 48.5 1.0
CG2 I:VAL68 4.9 43.5 1.0
CG1 I:ILE64 4.9 49.9 1.0

Iron binding site 6 out of 12 in 6tjv

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Iron binding site 6 out of 12 in the Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:52.5
occ:1.00
 FE2 I:SF4202 0.0 52.5 1.0
S1 I:SF4202 2.3 52.5 1.0
S3 I:SF4202 2.3 52.5 1.0
S4 I:SF4202 2.3 52.5 1.0
FE4 I:SF4202 2.7 52.5 1.0
FE3 I:SF4202 2.7 52.5 1.0
FE1 I:SF4202 2.7 52.5 1.0
SG I:CYS69 2.8 42.9 1.0
CB I:CYS69 3.5 42.9 1.0
CE2 I:TYR96 3.8 45.9 1.0
OH I:TYR96 3.8 45.9 1.0
S2 I:SF4202 3.9 52.5 1.0
CZ I:TYR96 4.2 45.9 1.0
N I:CYS69 4.3 42.9 1.0
CA I:CYS69 4.5 42.9 1.0
CD2 I:LEU118 4.6 45.6 1.0
SG I:CYS63 4.7 52.6 1.0
CD2 I:TYR96 4.8 45.9 1.0
N I:GLU67 5.0 48.5 1.0

Iron binding site 7 out of 12 in 6tjv

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Iron binding site 7 out of 12 in the Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:52.5
occ:1.00
 FE3 I:SF4202 0.0 52.5 1.0
S2 I:SF4202 2.3 52.5 1.0
S1 I:SF4202 2.3 52.5 1.0
S4 I:SF4202 2.3 52.5 1.0
FE1 I:SF4202 2.7 52.5 1.0
FE4 I:SF4202 2.7 52.5 1.0
FE2 I:SF4202 2.7 52.5 1.0
SG I:CYS63 2.8 52.6 1.0
CB I:CYS63 3.4 52.6 1.0
CA I:CYS63 3.5 52.6 1.0
N I:ILE64 3.6 49.9 1.0
N I:ALA65 3.8 52.6 1.0
S3 I:SF4202 3.9 52.5 1.0
C I:CYS63 4.1 52.6 1.0
SG I:CYS117 4.4 49.9 1.0
CA I:ALA65 4.5 52.6 1.0
CB I:CYS117 4.7 49.9 1.0
CA I:ILE64 4.7 49.9 1.0
C I:ILE64 4.7 49.9 1.0
OG1 I:THR115 4.7 47.9 1.0
N I:CYS63 4.8 52.6 1.0
N I:CYS66 4.8 48.5 1.0
SG I:CYS113 4.9 46.5 1.0
CG1 I:ILE64 4.9 49.9 1.0

Iron binding site 8 out of 12 in 6tjv

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Iron binding site 8 out of 12 in the Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:52.5
occ:1.00
 FE4 I:SF4202 0.0 52.5 1.0
S1 I:SF4202 2.3 52.5 1.0
S3 I:SF4202 2.3 52.5 1.0
S2 I:SF4202 2.3 52.5 1.0
FE2 I:SF4202 2.7 52.5 1.0
FE3 I:SF4202 2.7 52.5 1.0
FE1 I:SF4202 2.7 52.5 1.0
SG I:CYS113 2.8 46.5 1.0
CB I:CYS113 3.5 46.5 1.0
CD I:PRO114 3.7 45.7 1.0
CA I:CYS113 3.7 46.5 1.0
S4 I:SF4202 3.9 52.5 1.0
OG1 I:THR115 4.3 47.9 1.0
N I:PRO114 4.3 45.7 1.0
C I:CYS113 4.4 46.5 1.0
SG I:CYS66 4.6 48.5 1.0
CB I:CYS117 4.7 49.9 1.0
N I:CYS113 4.8 46.5 1.0
CG I:PRO114 5.0 45.7 1.0

Iron binding site 9 out of 12 in 6tjv

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Iron binding site 9 out of 12 in the Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe501

b:47.6
occ:1.00
 FE1 K:SF4501 0.0 47.6 1.0
S4 K:SF4501 2.3 47.6 1.0
S2 K:SF4501 2.3 47.6 1.0
S3 K:SF4501 2.3 47.6 1.0
FE3 K:SF4501 2.7 47.6 1.0
FE2 K:SF4501 2.7 47.6 1.0
FE4 K:SF4501 2.7 47.6 1.0
SG K:CYS148 2.9 45.4 1.0
CA K:CYS148 3.4 45.4 1.0
CB K:CYS148 3.6 45.4 1.0
S1 K:SF4501 3.9 47.6 1.0
N K:PRO149 4.2 47.1 1.0
C K:CYS148 4.4 45.4 1.0
N K:CYS148 4.4 45.4 1.0
SG K:CYS117 4.4 40.9 1.0
SG K:CYS53 4.5 48.6 1.0
NH2 H:ARG69 4.6 45.7 1.0
CD K:PRO149 4.6 47.1 1.0
N K:ALA116 4.6 40.9 1.0
O K:GLY147 4.8 44.7 1.0
N K:CYS117 5.0 40.9 1.0
CE K:MET123 5.0 42.3 1.0
CB K:CYS117 5.0 40.9 1.0
CA K:PRO149 5.0 47.1 1.0

Iron binding site 10 out of 12 in 6tjv

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Iron binding site 10 out of 12 in the Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of the Ndh-1MS Complex From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe501

b:47.6
occ:1.00
 FE2 K:SF4501 0.0 47.6 1.0
S3 K:SF4501 2.3 47.6 1.0
S1 K:SF4501 2.3 47.6 1.0
S4 K:SF4501 2.3 47.6 1.0
FE4 K:SF4501 2.7 47.6 1.0
SG K:CYS53 2.7 48.6 1.0
FE3 K:SF4501 2.7 47.6 1.0
FE1 K:SF4501 2.7 47.6 1.0
N K:CYS53 3.2 48.6 1.0
CB K:CYS53 3.3 48.6 1.0
CA K:CYS53 3.7 48.6 1.0
S2 K:SF4501 3.9 47.6 1.0
CB K:CYS52 4.0 49.7 1.0
C K:CYS52 4.3 49.7 1.0
CA K:CYS52 4.5 49.7 1.0
N K:CYS52 4.6 49.7 1.0
SG K:CYS52 4.7 49.7 1.0
CA K:GLY88 4.7 47.2 1.0
N K:GLY88 4.9 47.2 1.0
CA K:GLY115 4.9 43.9 1.0

Reference:

J.M.Schuller, P.Saura, J.Thiemann, S.K.Schuller, A.P.Gamiz-Hernandez, G.Kurisu, M.M.Nowaczyk, V.R.I.Kaila. Redox-Coupled Proton Pumping Drives Carbon Concentration in the Photosynthetic Complex I. Nat Commun V. 11 494 2020.
ISSN: ESSN 2041-1723
PubMed: 31980611
DOI: 10.1038/S41467-020-14347-4
Page generated: Wed Aug 7 11:30:05 2024

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