Iron in PDB 7p7j: Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State

Other elements in 7p7j:

The structure of Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Iron atom in the Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State (pdb code 7p7j). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 32 binding sites of Iron where determined in the Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State, PDB code: 7p7j:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 32 in 7p7j

Go back to Iron Binding Sites List in 7p7j
Iron binding site 1 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe501

b:18.1
occ:1.00
 FE1 F:SF4501 0.0 18.1 1.0
S4 F:SF4501 2.3 25.7 1.0
S3 F:SF4501 2.3 16.1 1.0
S2 F:SF4501 2.3 24.5 1.0
SG F:CYS354 2.3 24.6 1.0
FE2 F:SF4501 2.6 23.5 1.0
FE3 F:SF4501 2.7 30.4 1.0
FE4 F:SF4501 2.8 27.7 1.0
CB F:CYS354 3.4 20.6 1.0
N F:CYS354 3.8 10.0 1.0
S1 F:SF4501 3.9 23.1 1.0
CA F:CYS354 4.0 17.2 1.0
CB F:CYS357 4.1 12.5 1.0
CB F:PHE397 4.1 28.7 1.0
N F:PHE397 4.2 23.9 1.0
O F:CYS354 4.2 24.4 1.0
N F:CYS398 4.4 24.2 1.0
SG F:CYS357 4.4 35.8 1.0
C F:CYS354 4.5 16.1 1.0
CA F:PHE397 4.6 25.1 1.0
CB F:TRP353 4.8 16.9 1.0
CB F:THR396 4.8 35.8 1.0
C F:TRP353 4.8 23.4 1.0
SG F:CYS398 4.8 25.0 1.0
SG F:CYS351 4.9 30.3 1.0
N F:TRP353 4.9 13.6 1.0

Iron binding site 2 out of 32 in 7p7j

Go back to Iron Binding Sites List in 7p7j
Iron binding site 2 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe501

b:23.5
occ:1.00
 FE2 F:SF4501 0.0 23.5 1.0
S4 F:SF4501 2.3 25.7 1.0
S3 F:SF4501 2.3 16.1 1.0
S1 F:SF4501 2.3 23.1 1.0
SG F:CYS357 2.3 35.8 1.0
FE1 F:SF4501 2.6 18.1 1.0
FE4 F:SF4501 2.7 27.7 1.0
FE3 F:SF4501 2.7 30.4 1.0
CB F:CYS357 3.0 12.5 1.0
OG F:SER350 3.5 34.9 1.0
CD2 F:HIS400 3.8 35.8 1.0
S2 F:SF4501 3.9 24.5 1.0
N F:CYS351 4.3 22.7 1.0
CB F:SER350 4.3 28.6 1.0
CG F:HIS400 4.4 31.5 1.0
CA F:CYS357 4.5 19.1 1.0
CB F:HIS400 4.5 25.0 1.0
CA F:SER350 4.5 23.5 1.0
SG F:CYS354 4.5 24.6 1.0
NE2 F:HIS400 4.8 37.3 1.0
SG F:CYS351 4.9 30.3 1.0
SG F:CYS398 4.9 25.0 1.0
C F:CYS357 5.0 16.7 1.0
C F:SER350 5.0 24.3 1.0
N F:ARG358 5.0 16.3 1.0
CB F:ALA401 5.0 28.4 1.0
N F:GLY352 5.0 21.0 1.0

Iron binding site 3 out of 32 in 7p7j

Go back to Iron Binding Sites List in 7p7j
Iron binding site 3 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe501

b:30.4
occ:1.00
 FE3 F:SF4501 0.0 30.4 1.0
S4 F:SF4501 2.3 25.7 1.0
S2 F:SF4501 2.3 24.5 1.0
S1 F:SF4501 2.3 23.1 1.0
SG F:CYS398 2.3 25.0 1.0
FE4 F:SF4501 2.6 27.7 1.0
FE2 F:SF4501 2.7 23.5 1.0
FE1 F:SF4501 2.7 18.1 1.0
CB F:CYS398 3.4 21.1 1.0
N F:CYS398 3.9 24.2 1.0
CB F:HIS400 3.9 25.0 1.0
S3 F:SF4501 3.9 16.1 1.0
CA F:CYS398 4.0 22.2 1.0
CG F:PRO197 4.3 35.5 1.0
C F:CYS398 4.3 23.2 1.0
N F:HIS400 4.5 17.3 1.0
O F:CYS398 4.6 30.6 1.0
CD1 F:ILE179 4.6 40.0 1.0
CG F:HIS400 4.7 31.5 1.0
SG F:CYS351 4.7 30.3 1.0
CA F:HIS400 4.8 20.7 1.0
CD2 F:HIS400 4.8 35.8 1.0
SG F:CYS354 4.9 24.6 1.0
SG F:CYS357 4.9 35.8 1.0
N F:ALA399 4.9 24.0 1.0
CD F:PRO197 4.9 31.3 1.0
C F:PHE397 5.0 30.4 1.0

Iron binding site 4 out of 32 in 7p7j

Go back to Iron Binding Sites List in 7p7j
Iron binding site 4 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe501

b:27.7
occ:1.00
 FE4 F:SF4501 0.0 27.7 1.0
S3 F:SF4501 2.3 16.1 1.0
S2 F:SF4501 2.3 24.5 1.0
S1 F:SF4501 2.3 23.1 1.0
SG F:CYS351 2.3 30.3 1.0
FE3 F:SF4501 2.6 30.4 1.0
FE2 F:SF4501 2.7 23.5 1.0
FE1 F:SF4501 2.8 18.1 1.0
CB F:CYS351 3.4 24.4 1.0
N F:CYS351 3.7 22.7 1.0
S4 F:SF4501 3.9 25.7 1.0
N F:TRP353 3.9 13.6 1.0
CA F:CYS351 3.9 19.4 1.0
CB F:TRP353 4.0 16.9 1.0
N F:GLY352 4.0 21.0 1.0
C F:CYS351 4.2 26.2 1.0
CD F:PRO197 4.4 31.3 1.0
OG F:SER350 4.5 34.9 1.0
CA F:TRP353 4.5 13.0 1.0
CG F:PRO197 4.6 35.5 1.0
N F:CYS354 4.6 10.0 1.0
SG F:CYS398 4.7 25.0 1.0
C F:SER350 4.9 24.3 1.0
SG F:CYS357 4.9 35.8 1.0
C F:GLY352 4.9 16.9 1.0
SG F:CYS354 4.9 24.6 1.0
CA F:GLY352 5.0 13.6 1.0

Iron binding site 5 out of 32 in 7p7j

Go back to Iron Binding Sites List in 7p7j
Iron binding site 5 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:62.5
occ:1.00
 FE1 E:FES201 0.0 62.5 1.0
S2 E:FES201 2.2 84.5 1.0
S1 E:FES201 2.2 60.5 1.0
SG E:CYS92 2.3 63.3 1.0
SG E:CYS97 2.3 62.8 1.0
FE2 E:FES201 2.7 78.5 1.0
CB E:CYS92 3.5 63.2 1.0
CB E:CYS97 3.5 64.0 1.0
ND2 E:ASN142 4.1 71.3 1.0
N E:CYS97 4.1 60.7 1.0
N E:LEU134 4.3 69.8 1.0
CA E:CYS133 4.3 61.9 1.0
CA E:CYS97 4.4 61.5 1.0
SG E:CYS133 4.4 72.2 1.0
CB E:SER94 4.4 47.0 1.0
CB E:CYS133 4.6 66.4 1.0
SG E:CYS137 4.7 75.5 1.0
CA E:CYS92 4.8 66.0 1.0
C E:CYS133 4.9 70.4 1.0
CA E:CYS137 4.9 74.5 1.0
N E:SER94 4.9 52.8 1.0

Iron binding site 6 out of 32 in 7p7j

Go back to Iron Binding Sites List in 7p7j
Iron binding site 6 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:78.5
occ:1.00
 FE2 E:FES201 0.0 78.5 1.0
S2 E:FES201 2.2 84.5 1.0
S1 E:FES201 2.2 60.5 1.0
SG E:CYS137 2.3 75.5 1.0
SG E:CYS133 2.3 72.2 1.0
FE1 E:FES201 2.7 62.5 1.0
CB E:CYS133 3.4 66.4 1.0
CB E:CYS137 3.4 73.6 1.0
CA E:CYS137 3.8 74.5 1.0
N E:CYS137 3.9 75.0 1.0
CA E:CYS133 3.9 61.9 1.0
N E:LEU134 3.9 69.8 1.0
N E:GLY135 4.0 73.7 1.0
N E:ASN136 4.2 73.8 1.0
C E:CYS133 4.2 70.4 1.0
N F:GLY97 4.4 74.0 1.0
SG E:CYS92 4.4 63.3 1.0
C E:ASN136 4.5 75.6 1.0
CA E:GLY135 4.6 77.3 1.0
SG E:CYS97 4.7 62.8 1.0
CG2 E:VAL96 4.8 39.2 1.0
CB E:VAL96 4.8 52.4 1.0
C E:GLY135 4.8 79.0 1.0
C E:LEU134 4.8 70.1 1.0
CA F:PRO96 4.9 71.3 1.0
CA E:LEU134 4.9 71.8 1.0

Iron binding site 7 out of 32 in 7p7j

Go back to Iron Binding Sites List in 7p7j
Iron binding site 7 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe1001

b:22.1
occ:1.00
 FE1 G:SF41001 0.0 22.1 1.0
S3 G:SF41001 2.3 14.7 1.0
S2 G:SF41001 2.3 2.4 1.0
S4 G:SF41001 2.3 26.4 1.0
SG G:CYS114 2.3 15.8 1.0
FE4 G:SF41001 2.7 17.3 1.0
FE3 G:SF41001 2.7 9.2 1.0
FE2 G:SF41001 2.7 235.6 1.0
CB G:CYS114 3.3 12.3 1.0
CG G:GLN117 3.8 1.9 1.0
S1 G:SF41001 3.9 18.6 1.0
NE2 G:HIS101 4.4 8.8 1.0
CD G:GLN117 4.4 8.7 1.0
N G:GLN117 4.5 11.4 1.0
CB G:LEU116 4.5 7.6 1.0
CD2 G:LEU116 4.5 5.9 1.0
CA G:CYS114 4.7 13.7 1.0
CB G:GLU110 4.7 16.7 1.0
CB G:GLN117 4.7 6.0 1.0
SG G:CYS108 4.8 10.6 1.0
CA G:THR205 4.8 5.1 1.0
N G:GLY206 4.9 13.4 1.0
OE1 G:GLN117 4.9 20.8 1.0
SG G:CYS105 4.9 27.0 1.0
CG G:LEU116 4.9 7.4 1.0

Iron binding site 8 out of 32 in 7p7j

Go back to Iron Binding Sites List in 7p7j
Iron binding site 8 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe1001

b:235.6
occ:1.00
 FE2 G:SF41001 0.0 235.6 1.0
S1 G:SF41001 2.3 18.6 1.0
S4 G:SF41001 2.3 26.4 1.0
S3 G:SF41001 2.3 14.7 1.0
SG G:CYS105 2.3 27.0 1.0
FE4 G:SF41001 2.7 17.3 1.0
FE3 G:SF41001 2.7 9.2 1.0
FE1 G:SF41001 2.7 22.1 1.0
CB G:CYS105 3.4 7.5 1.0
CA G:CYS105 3.6 9.6 1.0
S2 G:SF41001 3.9 2.4 1.0
N G:CYS105 3.9 6.6 1.0
NE2 G:GLN117 4.1 7.3 1.0
CG G:GLN117 4.1 1.9 1.0
NE2 G:HIS101 4.1 8.8 1.0
CD G:GLN117 4.2 8.7 1.0
CG1 C:ILE516 4.5 9.8 1.0
CD2 G:HIS101 4.6 9.1 1.0
C G:ASP104 4.7 8.7 1.0
CD1 C:ILE512 4.8 24.4 1.0
SG G:CYS108 4.8 10.6 1.0
CD1 C:ILE516 4.8 15.9 1.0
SG G:CYS114 4.8 15.8 1.0
CB G:CYS108 4.9 9.8 1.0
C G:CYS105 5.0 8.0 1.0

Iron binding site 9 out of 32 in 7p7j

Go back to Iron Binding Sites List in 7p7j
Iron binding site 9 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe1001

b:9.2
occ:1.00
 FE3 G:SF41001 0.0 9.2 1.0
NE2 G:HIS101 1.9 8.8 1.0
S1 G:SF41001 2.3 18.6 1.0
S2 G:SF41001 2.3 2.4 1.0
S4 G:SF41001 2.3 26.4 1.0
FE2 G:SF41001 2.7 235.6 1.0
FE1 G:SF41001 2.7 22.1 1.0
CE1 G:HIS101 2.7 9.4 1.0
FE4 G:SF41001 2.7 17.3 1.0
CD2 G:HIS101 3.0 9.1 1.0
ND1 G:HIS101 3.9 5.2 1.0
S3 G:SF41001 3.9 14.7 1.0
CG G:HIS101 4.1 12.7 1.0
CD2 G:LEU116 4.1 5.9 1.0
CG G:ARG152 4.2 16.5 1.0
CB G:ARG152 4.4 14.7 1.0
CD G:ARG152 4.7 10.9 1.0
SG G:CYS105 4.8 27.0 1.0
SG G:CYS114 4.8 15.8 1.0
SG G:CYS108 4.8 10.6 1.0
O G:ARG152 5.0 18.3 1.0

Iron binding site 10 out of 32 in 7p7j

Go back to Iron Binding Sites List in 7p7j
Iron binding site 10 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Complex I From E. Coli, Ddm/Lmng-Purified, with Dq, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe1001

b:17.3
occ:1.00
 FE4 G:SF41001 0.0 17.3 1.0
S2 G:SF41001 2.3 2.4 1.0
S1 G:SF41001 2.3 18.6 1.0
S3 G:SF41001 2.3 14.7 1.0
SG G:CYS108 2.3 10.6 1.0
FE1 G:SF41001 2.7 22.1 1.0
FE2 G:SF41001 2.7 235.6 1.0
FE3 G:SF41001 2.7 9.2 1.0
CB G:CYS108 3.2 9.8 1.0
S4 G:SF41001 3.9 26.4 1.0
CD G:ARG152 4.2 10.9 1.0
CB G:GLU110 4.4 16.7 1.0
NE G:ARG152 4.5 7.5 1.0
N G:GLY206 4.5 13.4 1.0
NE2 G:HIS101 4.5 8.8 1.0
CG G:ARG152 4.6 16.5 1.0
CA G:CYS105 4.6 9.6 1.0
CA G:GLY206 4.7 16.8 1.0
CA G:CYS108 4.7 10.9 1.0
N G:GLY111 4.7 14.5 1.0
SG G:CYS114 4.7 15.8 1.0
SG G:CYS105 4.8 27.0 1.0
N G:CYS105 4.9 6.6 1.0
N G:GLU110 4.9 16.7 1.0
C G:GLU110 4.9 16.9 1.0
CA G:GLU110 5.0 17.1 1.0

Reference:

V.Kravchuk, O.Petrova, D.Kampjut, A.Wojciechowska-Bason, Z.Breese, L.Sazanov. A Universal Coupling Mechanism of Respiratory Complex I. Nature V. 609 808 2022.
ISSN: ESSN 1476-4687
PubMed: 36104567
DOI: 10.1038/S41586-022-05199-7
Page generated: Thu Aug 8 16:30:25 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy