Iron in PDB 7tqf: Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn)

Enzymatic activity of Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn)

All present enzymatic activity of Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn):
1.18.6.1;

Protein crystallography data

The structure of Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn), PDB code: 7tqf was solved by T.M.Buscagan, J.T.Kaiser, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.84 / 1.45
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.595, 74.173, 74.688, 90, 90, 90
R / Rfree (%) 18.4 / 20.3

Other elements in 7tqf:

The structure of Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn) (pdb code 7tqf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn), PDB code: 7tqf:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7tqf

Go back to Iron Binding Sites List in 7tqf
Iron binding site 1 out of 4 in the Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:18.9
occ:0.37
 FE1 A:SF4301 0.0 18.9 0.4
FE1 A:SFS302 0.0 18.9 0.6
SG A:CYS97 2.3 20.8 1.0
S4 A:SF4301 2.3 18.9 0.6
S3 A:SF4301 2.3 18.9 0.4
SE4 A:SFS302 2.4 18.9 0.5
SE3 A:SFS302 2.4 18.9 0.6
FE2 A:SF4301 2.7 18.9 0.6
FE2 A:SFS302 2.7 18.9 0.5
CB A:CYS97 3.3 22.4 1.0
CA A:CYS97 3.8 20.4 1.0
N A:ALA98 4.1 18.0 1.0
C A:CYS97 4.2 19.9 1.0
CA A:GLY133 4.5 20.7 1.0
N A:GLY99 4.7 17.2 1.0
N A:GLY133 4.8 20.4 1.0
SG A:CYS132 4.9 20.5 1.0
O A:HOH500 4.9 21.7 1.0

Iron binding site 2 out of 4 in 7tqf

Go back to Iron Binding Sites List in 7tqf
Iron binding site 2 out of 4 in the Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:18.9
occ:0.55
 FE2 A:SF4301 0.0 18.9 0.6
FE2 A:SFS302 0.0 18.9 0.5
SG A:CYS132 2.3 20.5 1.0
S3 A:SF4301 2.3 18.9 0.4
S4 A:SF4301 2.3 18.9 0.6
SE3 A:SFS302 2.4 18.9 0.6
SE4 A:SFS302 2.5 18.9 0.5
FE1 A:SF4301 2.7 18.9 0.4
FE1 A:SFS302 2.7 18.9 0.6
CB A:CYS132 3.5 20.1 1.0
C A:CYS132 4.1 21.1 1.0
O A:CYS132 4.2 20.6 1.0
CA A:CYS132 4.3 19.4 1.0
CG2 A:VAL130 4.3 20.0 1.0
N A:GLY133 4.4 20.4 1.0
SG A:CYS97 4.8 20.8 1.0
CB A:VAL130 4.8 21.4 1.0
CA A:GLY133 4.9 20.7 1.0
N A:CYS132 4.9 18.1 1.0

Iron binding site 3 out of 4 in 7tqf

Go back to Iron Binding Sites List in 7tqf
Iron binding site 3 out of 4 in the Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe302

b:18.9
occ:0.63
 FE1 A:SF4301 0.0 18.9 0.4
FE1 A:SFS302 0.0 18.9 0.6
SG A:CYS97 2.3 20.8 1.0
S4 A:SF4301 2.3 18.9 0.6
S3 A:SF4301 2.3 18.9 0.4
SE4 A:SFS302 2.4 18.9 0.5
SE3 A:SFS302 2.4 18.9 0.6
FE2 A:SF4301 2.7 18.9 0.6
FE2 A:SFS302 2.7 18.9 0.5
CB A:CYS97 3.3 22.4 1.0
CA A:CYS97 3.8 20.4 1.0
N A:ALA98 4.1 18.0 1.0
C A:CYS97 4.2 19.9 1.0
CA A:GLY133 4.5 20.7 1.0
N A:GLY99 4.7 17.2 1.0
N A:GLY133 4.8 20.4 1.0
SG A:CYS132 4.9 20.5 1.0
O A:HOH500 4.9 21.7 1.0

Iron binding site 4 out of 4 in 7tqf

Go back to Iron Binding Sites List in 7tqf
Iron binding site 4 out of 4 in the Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (22 Mm Ksecn) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe302

b:18.9
occ:0.45
 FE2 A:SF4301 0.0 18.9 0.6
FE2 A:SFS302 0.0 18.9 0.5
SG A:CYS132 2.3 20.5 1.0
S3 A:SF4301 2.3 18.9 0.4
S4 A:SF4301 2.3 18.9 0.6
SE3 A:SFS302 2.4 18.9 0.6
SE4 A:SFS302 2.5 18.9 0.5
FE1 A:SF4301 2.7 18.9 0.4
FE1 A:SFS302 2.7 18.9 0.6
CB A:CYS132 3.5 20.1 1.0
C A:CYS132 4.1 21.1 1.0
O A:CYS132 4.2 20.6 1.0
CA A:CYS132 4.3 19.4 1.0
CG2 A:VAL130 4.3 20.0 1.0
N A:GLY133 4.4 20.4 1.0
SG A:CYS97 4.8 20.8 1.0
CB A:VAL130 4.8 21.4 1.0
CA A:GLY133 4.9 20.7 1.0
N A:CYS132 4.9 18.1 1.0

Reference:

T.M.Buscagan, J.T.Kaiser, D.C.Rees. Selenocyanate Derived Se-Incorporation Into the Nitrogenase Fe Protein Cluster. Elife V. 11 2022.
ISSN: ESSN 2050-084X
PubMed: 35904245
DOI: 10.7554/ELIFE.79311
Page generated: Fri Aug 9 02:19:28 2024

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