Iron in PDB 7yzq: Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Protein crystallography data
The structure of Mgadp-ALF4-Bound Dccp:Dccp-R Complex, PDB code: 7yzq
was solved by
J.-H.Jeoung,
H.Dobbek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.16 /
1.96
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
78.032,
81.587,
121.485,
100.83,
96.92,
90.17
|
R / Rfree (%)
|
17.8 /
22.3
|
Other elements in 7yzq:
The structure of Mgadp-ALF4-Bound Dccp:Dccp-R Complex also contains other interesting chemical elements:
Iron Binding Sites:
Iron binding site 1 out
of 40 in 7yzq
Go back to
Iron Binding Sites List in 7yzq
Iron binding site 1 out
of 40 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:13.6
occ:1.00
|
FE1
|
C:BJ8501
|
0.0
|
13.6
|
1.0
|
S4
|
C:BJ8501
|
2.2
|
11.8
|
1.0
|
S9
|
C:BJ8501
|
2.3
|
16.5
|
1.0
|
S2
|
C:BJ8501
|
2.3
|
14.5
|
1.0
|
S3
|
C:BJ8501
|
2.3
|
13.8
|
1.0
|
FE4
|
C:BJ8501
|
2.7
|
13.9
|
1.0
|
FE3
|
C:BJ8501
|
2.7
|
14.2
|
1.0
|
FE2
|
C:BJ8501
|
2.7
|
13.6
|
1.0
|
HD13
|
C:LEU115
|
3.5
|
18.7
|
1.0
|
HZ2
|
C:LYS146
|
3.8
|
20.8
|
1.0
|
FE8
|
C:BJ8501
|
3.8
|
18.8
|
1.0
|
S1
|
C:BJ8501
|
3.9
|
14.8
|
1.0
|
HD2
|
C:PRO283
|
3.9
|
18.1
|
1.0
|
HE3
|
C:LYS146
|
4.1
|
21.4
|
1.0
|
HD2
|
C:LYS146
|
4.2
|
15.5
|
1.0
|
HD22
|
C:LEU115
|
4.5
|
17.8
|
1.0
|
CD1
|
C:LEU115
|
4.5
|
15.6
|
1.0
|
NZ
|
C:LYS146
|
4.6
|
17.3
|
1.0
|
S7
|
C:BJ8501
|
4.6
|
18.3
|
1.0
|
HG2
|
C:PRO283
|
4.6
|
20.4
|
1.0
|
HG22
|
C:THR282
|
4.6
|
18.5
|
1.0
|
CD
|
C:PRO283
|
4.7
|
15.1
|
1.0
|
HB3
|
C:LEU115
|
4.7
|
20.9
|
1.0
|
HG3
|
C:PRO283
|
4.7
|
20.4
|
1.0
|
CE
|
C:LYS146
|
4.7
|
17.8
|
1.0
|
HD11
|
C:LEU115
|
4.7
|
18.7
|
1.0
|
S6
|
C:BJ8501
|
4.7
|
17.6
|
1.0
|
HB
|
C:THR282
|
4.8
|
14.3
|
1.0
|
SG
|
C:CYS113
|
4.8
|
15.9
|
1.0
|
HD3
|
C:PRO283
|
4.8
|
18.1
|
1.0
|
HB3
|
C:CYS143
|
4.8
|
15.7
|
1.0
|
HE2
|
C:TYR376
|
4.9
|
12.9
|
1.0
|
SG
|
C:CYS143
|
4.9
|
15.7
|
1.0
|
CG
|
C:PRO283
|
4.9
|
17.0
|
1.0
|
SG
|
C:CYS373
|
5.0
|
14.3
|
1.0
|
CD
|
C:LYS146
|
5.0
|
12.9
|
1.0
|
HD12
|
C:LEU115
|
5.0
|
18.7
|
1.0
|
HZ3
|
C:LYS146
|
5.0
|
20.8
|
1.0
|
|
Iron binding site 2 out
of 40 in 7yzq
Go back to
Iron Binding Sites List in 7yzq
Iron binding site 2 out
of 40 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:13.6
occ:1.00
|
FE2
|
C:BJ8501
|
0.0
|
13.6
|
1.0
|
S3
|
C:BJ8501
|
2.2
|
13.8
|
1.0
|
S4
|
C:BJ8501
|
2.2
|
11.8
|
1.0
|
SG
|
C:CYS113
|
2.3
|
15.9
|
1.0
|
S1
|
C:BJ8501
|
2.3
|
14.8
|
1.0
|
FE3
|
C:BJ8501
|
2.6
|
14.2
|
1.0
|
FE4
|
C:BJ8501
|
2.7
|
13.9
|
1.0
|
FE1
|
C:BJ8501
|
2.7
|
13.6
|
1.0
|
HB2
|
C:CYS113
|
3.0
|
13.5
|
1.0
|
CB
|
C:CYS113
|
3.1
|
11.2
|
1.0
|
HB3
|
C:CYS113
|
3.2
|
13.5
|
1.0
|
HB3
|
C:LEU115
|
3.4
|
20.9
|
1.0
|
HB2
|
C:CYS373
|
3.5
|
17.4
|
1.0
|
HG13
|
C:ILE116
|
3.7
|
20.6
|
1.0
|
S2
|
C:BJ8501
|
3.9
|
14.5
|
1.0
|
HD12
|
C:LEU370
|
3.9
|
18.1
|
1.0
|
HD13
|
C:LEU115
|
3.9
|
18.7
|
1.0
|
HD11
|
C:ILE116
|
4.0
|
18.8
|
1.0
|
HD22
|
C:LEU115
|
4.2
|
17.8
|
1.0
|
CB
|
C:LEU115
|
4.2
|
17.4
|
1.0
|
HB2
|
C:LEU115
|
4.3
|
20.9
|
1.0
|
CB
|
C:CYS373
|
4.3
|
14.5
|
1.0
|
HA
|
C:CYS373
|
4.4
|
13.9
|
1.0
|
CG1
|
C:ILE116
|
4.4
|
17.1
|
1.0
|
HB2
|
C:LEU370
|
4.5
|
14.7
|
1.0
|
SG
|
C:CYS373
|
4.5
|
14.3
|
1.0
|
CD1
|
C:ILE116
|
4.6
|
15.6
|
1.0
|
CA
|
C:CYS113
|
4.6
|
11.1
|
1.0
|
H
|
C:LEU115
|
4.6
|
21.3
|
1.0
|
H
|
C:ILE116
|
4.6
|
17.7
|
1.0
|
HG12
|
C:ILE116
|
4.6
|
20.6
|
1.0
|
HD12
|
C:ILE116
|
4.7
|
18.8
|
1.0
|
S9
|
C:BJ8501
|
4.7
|
16.5
|
1.0
|
CD1
|
C:LEU115
|
4.8
|
15.6
|
1.0
|
HA
|
C:CYS113
|
4.8
|
13.4
|
1.0
|
CD1
|
C:LEU370
|
4.8
|
15.1
|
1.0
|
CA
|
C:CYS373
|
4.9
|
11.6
|
1.0
|
HG21
|
C:THR282
|
4.9
|
18.5
|
1.0
|
CG
|
C:LEU115
|
4.9
|
18.6
|
1.0
|
HD13
|
C:LEU370
|
4.9
|
18.1
|
1.0
|
SG
|
C:CYS143
|
5.0
|
15.7
|
1.0
|
|
Iron binding site 3 out
of 40 in 7yzq
Go back to
Iron Binding Sites List in 7yzq
Iron binding site 3 out
of 40 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:14.2
occ:1.00
|
FE3
|
C:BJ8501
|
0.0
|
14.2
|
1.0
|
S1
|
C:BJ8501
|
2.2
|
14.8
|
1.0
|
S2
|
C:BJ8501
|
2.3
|
14.5
|
1.0
|
S4
|
C:BJ8501
|
2.3
|
11.8
|
1.0
|
SG
|
C:CYS373
|
2.3
|
14.3
|
1.0
|
FE2
|
C:BJ8501
|
2.6
|
13.6
|
1.0
|
FE1
|
C:BJ8501
|
2.7
|
13.6
|
1.0
|
FE4
|
C:BJ8501
|
2.7
|
13.9
|
1.0
|
HB2
|
C:CYS373
|
2.8
|
17.4
|
1.0
|
CB
|
C:CYS373
|
3.2
|
14.5
|
1.0
|
HD2
|
C:TYR376
|
3.5
|
17.4
|
1.0
|
HG22
|
C:THR282
|
3.6
|
18.5
|
1.0
|
HA
|
C:CYS373
|
3.7
|
13.9
|
1.0
|
HG21
|
C:THR282
|
3.7
|
18.5
|
1.0
|
S3
|
C:BJ8501
|
3.8
|
13.8
|
1.0
|
HB3
|
C:CYS373
|
3.9
|
17.4
|
1.0
|
HD2
|
C:PRO375
|
3.9
|
15.0
|
1.0
|
CA
|
C:CYS373
|
4.0
|
11.6
|
1.0
|
CG2
|
C:THR282
|
4.1
|
15.4
|
1.0
|
CD2
|
C:TYR376
|
4.3
|
14.5
|
1.0
|
HB3
|
C:CYS143
|
4.3
|
15.7
|
1.0
|
HE2
|
C:TYR376
|
4.5
|
12.9
|
1.0
|
HG2
|
C:PRO375
|
4.5
|
15.1
|
1.0
|
HB2
|
C:CYS113
|
4.5
|
13.5
|
1.0
|
SG
|
C:CYS113
|
4.5
|
15.9
|
1.0
|
H
|
C:TYR376
|
4.6
|
16.5
|
1.0
|
HB2
|
C:PRO375
|
4.7
|
19.1
|
1.0
|
HB
|
C:THR282
|
4.7
|
14.3
|
1.0
|
HB2
|
C:TYR376
|
4.7
|
16.6
|
1.0
|
C
|
C:CYS373
|
4.8
|
15.8
|
1.0
|
CE2
|
C:TYR376
|
4.8
|
10.8
|
1.0
|
CD
|
C:PRO375
|
4.8
|
12.5
|
1.0
|
HG23
|
C:THR282
|
4.8
|
18.5
|
1.0
|
HB2
|
C:CYS143
|
4.8
|
15.7
|
1.0
|
S9
|
C:BJ8501
|
4.9
|
16.5
|
1.0
|
CB
|
C:CYS143
|
4.9
|
13.1
|
1.0
|
|
Iron binding site 4 out
of 40 in 7yzq
Go back to
Iron Binding Sites List in 7yzq
Iron binding site 4 out
of 40 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:13.9
occ:1.00
|
FE4
|
C:BJ8501
|
0.0
|
13.9
|
1.0
|
S3
|
C:BJ8501
|
2.2
|
13.8
|
1.0
|
S1
|
C:BJ8501
|
2.2
|
14.8
|
1.0
|
S2
|
C:BJ8501
|
2.4
|
14.5
|
1.0
|
SG
|
C:CYS143
|
2.6
|
15.7
|
1.0
|
FE1
|
C:BJ8501
|
2.7
|
13.6
|
1.0
|
FE2
|
C:BJ8501
|
2.7
|
13.6
|
1.0
|
FE3
|
C:BJ8501
|
2.7
|
14.2
|
1.0
|
HB3
|
C:CYS143
|
2.8
|
15.7
|
1.0
|
CB
|
C:CYS143
|
3.1
|
13.1
|
1.0
|
HB2
|
C:CYS143
|
3.3
|
15.7
|
1.0
|
HD11
|
C:ILE116
|
3.4
|
18.8
|
1.0
|
HD2
|
C:LYS146
|
3.4
|
15.5
|
1.0
|
S4
|
C:BJ8501
|
3.8
|
11.8
|
1.0
|
O
|
C:HOH856
|
4.1
|
14.4
|
1.0
|
HG3
|
C:LYS146
|
4.1
|
16.8
|
1.0
|
CD
|
C:LYS146
|
4.3
|
12.9
|
1.0
|
H
|
C:CYS143
|
4.3
|
18.5
|
1.0
|
CD1
|
C:ILE116
|
4.3
|
15.6
|
1.0
|
HE3
|
C:LYS146
|
4.4
|
21.4
|
1.0
|
HB2
|
C:CYS113
|
4.5
|
13.5
|
1.0
|
HG13
|
C:ILE116
|
4.5
|
20.6
|
1.0
|
CA
|
C:CYS143
|
4.5
|
14.3
|
1.0
|
S9
|
C:BJ8501
|
4.6
|
16.5
|
1.0
|
HB2
|
C:LYS146
|
4.6
|
17.7
|
1.0
|
HG2
|
C:PRO375
|
4.6
|
15.1
|
1.0
|
HB3
|
C:CYS113
|
4.7
|
13.5
|
1.0
|
CG
|
C:LYS146
|
4.7
|
14.0
|
1.0
|
HG12
|
C:ILE116
|
4.7
|
20.6
|
1.0
|
H
|
C:LYS146
|
4.7
|
20.1
|
1.0
|
HZ2
|
C:LYS146
|
4.7
|
20.8
|
1.0
|
SG
|
C:CYS113
|
4.8
|
15.9
|
1.0
|
HD12
|
C:ILE116
|
4.8
|
18.8
|
1.0
|
CG1
|
C:ILE116
|
4.8
|
17.1
|
1.0
|
SG
|
C:CYS373
|
4.8
|
14.3
|
1.0
|
HD2
|
C:PRO375
|
4.8
|
15.0
|
1.0
|
CE
|
C:LYS146
|
4.8
|
17.8
|
1.0
|
N
|
C:CYS143
|
4.8
|
15.4
|
1.0
|
CB
|
C:CYS113
|
4.9
|
11.2
|
1.0
|
HA
|
C:CYS373
|
4.9
|
13.9
|
1.0
|
HD13
|
C:ILE116
|
4.9
|
18.8
|
1.0
|
HB2
|
C:CYS373
|
4.9
|
17.4
|
1.0
|
|
Iron binding site 5 out
of 40 in 7yzq
Go back to
Iron Binding Sites List in 7yzq
Iron binding site 5 out
of 40 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:18.3
occ:1.00
|
FE5
|
C:BJ8501
|
0.0
|
18.3
|
1.0
|
S7
|
C:BJ8501
|
2.3
|
18.3
|
1.0
|
S6
|
C:BJ8501
|
2.3
|
17.6
|
1.0
|
S8
|
C:BJ8501
|
2.4
|
18.9
|
1.0
|
SG
|
C:CYS340
|
2.4
|
18.0
|
1.0
|
FE7
|
C:BJ8501
|
2.6
|
18.2
|
1.0
|
FE8
|
C:BJ8501
|
2.7
|
18.8
|
1.0
|
FE6
|
C:BJ8501
|
2.8
|
18.4
|
1.0
|
HB2
|
C:CYS340
|
3.0
|
18.0
|
1.0
|
HH
|
C:TYR376
|
3.2
|
15.5
|
1.0
|
CB
|
C:CYS340
|
3.3
|
15.0
|
1.0
|
HG
|
C:CYS342
|
3.7
|
23.1
|
1.0
|
HE2
|
C:TYR376
|
3.8
|
12.9
|
1.0
|
HB3
|
C:CYS340
|
3.8
|
18.0
|
1.0
|
S5
|
C:BJ8501
|
3.9
|
17.8
|
1.0
|
OH
|
C:TYR376
|
3.9
|
12.9
|
1.0
|
HG21
|
C:THR142
|
4.0
|
21.6
|
1.0
|
HA
|
C:CYS340
|
4.4
|
17.0
|
1.0
|
CA
|
C:CYS340
|
4.5
|
14.2
|
1.0
|
CE2
|
C:TYR376
|
4.6
|
10.8
|
1.0
|
HB
|
C:THR142
|
4.6
|
23.2
|
1.0
|
HH21
|
C:ARG312
|
4.6
|
19.9
|
1.0
|
SG
|
C:CYS308
|
4.6
|
15.3
|
1.0
|
HG22
|
C:THR142
|
4.7
|
21.6
|
1.0
|
H
|
C:CYS342
|
4.7
|
14.9
|
1.0
|
SG
|
C:CYS342
|
4.7
|
19.2
|
1.0
|
S9
|
C:BJ8501
|
4.7
|
16.5
|
1.0
|
CG2
|
C:THR142
|
4.7
|
18.0
|
1.0
|
S2
|
C:BJ8501
|
4.7
|
14.5
|
1.0
|
CZ
|
C:TYR376
|
4.8
|
12.8
|
1.0
|
H
|
C:ALA341
|
4.8
|
15.2
|
1.0
|
HB2
|
C:CYS342
|
4.8
|
16.3
|
1.0
|
SG
|
C:CYS75
|
4.8
|
16.5
|
1.0
|
HD2
|
C:TYR77
|
4.9
|
23.4
|
1.0
|
HE2
|
C:TYR77
|
5.0
|
19.3
|
1.0
|
|
Iron binding site 6 out
of 40 in 7yzq
Go back to
Iron Binding Sites List in 7yzq
Iron binding site 6 out
of 40 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:18.4
occ:1.00
|
FE6
|
C:BJ8501
|
0.0
|
18.4
|
1.0
|
S5
|
C:BJ8501
|
2.3
|
17.8
|
1.0
|
S8
|
C:BJ8501
|
2.3
|
18.9
|
1.0
|
SG
|
C:CYS75
|
2.3
|
16.5
|
1.0
|
S7
|
C:BJ8501
|
2.4
|
18.3
|
1.0
|
FE7
|
C:BJ8501
|
2.7
|
18.2
|
1.0
|
FE8
|
C:BJ8501
|
2.7
|
18.8
|
1.0
|
FE5
|
C:BJ8501
|
2.8
|
18.3
|
1.0
|
HA
|
C:CYS75
|
3.1
|
20.6
|
1.0
|
HB2
|
C:CYS75
|
3.2
|
22.5
|
1.0
|
CB
|
C:CYS75
|
3.2
|
18.7
|
1.0
|
H
|
C:VAL76
|
3.2
|
14.4
|
1.0
|
HG21
|
C:THR142
|
3.5
|
21.6
|
1.0
|
HD2
|
C:TYR77
|
3.6
|
23.4
|
1.0
|
HG22
|
C:VAL76
|
3.6
|
16.0
|
1.0
|
CA
|
C:CYS75
|
3.6
|
17.1
|
1.0
|
N
|
C:VAL76
|
3.9
|
12.0
|
1.0
|
HZ3
|
C:LYS146
|
4.0
|
20.8
|
1.0
|
S6
|
C:BJ8501
|
4.0
|
17.6
|
1.0
|
HZ2
|
C:LYS146
|
4.1
|
20.8
|
1.0
|
HB3
|
C:CYS75
|
4.1
|
22.5
|
1.0
|
H
|
C:TYR77
|
4.2
|
13.4
|
1.0
|
C
|
C:CYS75
|
4.2
|
17.3
|
1.0
|
HZ1
|
C:LYS146
|
4.3
|
20.8
|
1.0
|
NZ
|
C:LYS146
|
4.4
|
17.3
|
1.0
|
CG2
|
C:THR142
|
4.4
|
18.0
|
1.0
|
CD2
|
C:TYR77
|
4.5
|
19.5
|
1.0
|
OE2
|
C:GLU140
|
4.5
|
19.0
|
1.0
|
HB2
|
C:TYR77
|
4.6
|
20.3
|
1.0
|
CG2
|
C:VAL76
|
4.6
|
13.3
|
1.0
|
HG13
|
C:VAL76
|
4.6
|
16.3
|
1.0
|
HG3
|
C:GLU140
|
4.6
|
22.5
|
1.0
|
S9
|
C:BJ8501
|
4.7
|
16.5
|
1.0
|
HG1
|
C:THR142
|
4.7
|
19.3
|
1.0
|
HB2
|
C:CYS340
|
4.7
|
18.0
|
1.0
|
SG
|
C:CYS308
|
4.7
|
15.3
|
1.0
|
HG22
|
C:THR142
|
4.8
|
21.6
|
1.0
|
O
|
C:PHE74
|
4.8
|
19.3
|
1.0
|
SG
|
C:CYS340
|
4.9
|
18.0
|
1.0
|
HG23
|
C:THR142
|
4.9
|
21.6
|
1.0
|
N
|
C:TYR77
|
4.9
|
11.1
|
1.0
|
N
|
C:CYS75
|
4.9
|
19.3
|
1.0
|
HE2
|
C:TYR77
|
5.0
|
19.3
|
1.0
|
HG23
|
C:VAL76
|
5.0
|
16.0
|
1.0
|
|
Iron binding site 7 out
of 40 in 7yzq
Go back to
Iron Binding Sites List in 7yzq
Iron binding site 7 out
of 40 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:18.2
occ:1.00
|
FE7
|
C:BJ8501
|
0.0
|
18.2
|
1.0
|
SG
|
C:CYS308
|
2.3
|
15.3
|
1.0
|
S5
|
C:BJ8501
|
2.3
|
17.8
|
1.0
|
S8
|
C:BJ8501
|
2.3
|
18.9
|
1.0
|
S6
|
C:BJ8501
|
2.4
|
17.6
|
1.0
|
FE5
|
C:BJ8501
|
2.6
|
18.3
|
1.0
|
FE8
|
C:BJ8501
|
2.7
|
18.8
|
1.0
|
FE6
|
C:BJ8501
|
2.7
|
18.4
|
1.0
|
HB2
|
C:CYS308
|
3.1
|
14.1
|
1.0
|
CB
|
C:CYS308
|
3.2
|
11.8
|
1.0
|
HB3
|
C:CYS308
|
3.4
|
14.1
|
1.0
|
HG22
|
C:VAL76
|
3.5
|
16.0
|
1.0
|
HH21
|
C:ARG312
|
3.5
|
19.9
|
1.0
|
HE
|
C:ARG312
|
3.6
|
13.5
|
1.0
|
S7
|
C:BJ8501
|
3.8
|
18.3
|
1.0
|
HB2
|
C:CYS340
|
3.9
|
18.0
|
1.0
|
HG13
|
C:VAL76
|
3.9
|
16.3
|
1.0
|
H
|
C:VAL76
|
3.9
|
14.4
|
1.0
|
HH
|
C:TYR376
|
4.0
|
15.5
|
1.0
|
HG21
|
C:VAL76
|
4.2
|
16.0
|
1.0
|
CG2
|
C:VAL76
|
4.2
|
13.3
|
1.0
|
NH2
|
C:ARG312
|
4.2
|
16.6
|
1.0
|
HG11
|
C:VAL338
|
4.3
|
18.3
|
1.0
|
HD3
|
C:PRO283
|
4.4
|
18.1
|
1.0
|
NE
|
C:ARG312
|
4.4
|
11.2
|
1.0
|
CA
|
C:CYS308
|
4.6
|
11.7
|
1.0
|
HG3
|
C:PRO283
|
4.6
|
20.4
|
1.0
|
HA
|
C:CYS75
|
4.6
|
20.6
|
1.0
|
SG
|
C:CYS340
|
4.6
|
18.0
|
1.0
|
CB
|
C:CYS340
|
4.7
|
15.0
|
1.0
|
H
|
C:CYS308
|
4.7
|
13.2
|
1.0
|
CG1
|
C:VAL76
|
4.7
|
13.6
|
1.0
|
OH
|
C:TYR376
|
4.7
|
12.9
|
1.0
|
S9
|
C:BJ8501
|
4.7
|
16.5
|
1.0
|
HG11
|
C:VAL76
|
4.7
|
16.3
|
1.0
|
SG
|
C:CYS75
|
4.8
|
16.5
|
1.0
|
N
|
C:VAL76
|
4.8
|
12.0
|
1.0
|
CZ
|
C:ARG312
|
4.8
|
12.3
|
1.0
|
HA
|
C:CYS308
|
4.8
|
14.1
|
1.0
|
HH22
|
C:ARG312
|
4.8
|
19.9
|
1.0
|
HG12
|
C:VAL338
|
4.8
|
18.3
|
1.0
|
HD2
|
C:TYR77
|
4.9
|
23.4
|
1.0
|
CG1
|
C:VAL338
|
4.9
|
15.2
|
1.0
|
HG23
|
C:VAL76
|
4.9
|
16.0
|
1.0
|
|
Iron binding site 8 out
of 40 in 7yzq
Go back to
Iron Binding Sites List in 7yzq
Iron binding site 8 out
of 40 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:18.8
occ:1.00
|
FE8
|
C:BJ8501
|
0.0
|
18.8
|
1.0
|
S9
|
C:BJ8501
|
2.2
|
16.5
|
1.0
|
S7
|
C:BJ8501
|
2.3
|
18.3
|
1.0
|
S6
|
C:BJ8501
|
2.3
|
17.6
|
1.0
|
S5
|
C:BJ8501
|
2.4
|
17.8
|
1.0
|
FE5
|
C:BJ8501
|
2.7
|
18.3
|
1.0
|
FE7
|
C:BJ8501
|
2.7
|
18.2
|
1.0
|
FE6
|
C:BJ8501
|
2.7
|
18.4
|
1.0
|
HZ2
|
C:LYS146
|
3.2
|
20.8
|
1.0
|
HG3
|
C:PRO283
|
3.7
|
20.4
|
1.0
|
FE1
|
C:BJ8501
|
3.8
|
13.6
|
1.0
|
NZ
|
C:LYS146
|
3.9
|
17.3
|
1.0
|
S8
|
C:BJ8501
|
3.9
|
18.9
|
1.0
|
HZ3
|
C:LYS146
|
4.0
|
20.8
|
1.0
|
HD3
|
C:PRO283
|
4.0
|
18.1
|
1.0
|
HZ1
|
C:LYS146
|
4.1
|
20.8
|
1.0
|
S2
|
C:BJ8501
|
4.2
|
14.5
|
1.0
|
HA
|
C:CYS75
|
4.3
|
20.6
|
1.0
|
HB2
|
C:CYS308
|
4.4
|
14.1
|
1.0
|
HD2
|
C:PRO283
|
4.5
|
18.1
|
1.0
|
CG
|
C:PRO283
|
4.5
|
17.0
|
1.0
|
CD
|
C:PRO283
|
4.5
|
15.1
|
1.0
|
HH
|
C:TYR376
|
4.6
|
15.5
|
1.0
|
HE2
|
C:TYR376
|
4.6
|
12.9
|
1.0
|
HB2
|
C:CYS75
|
4.7
|
22.5
|
1.0
|
HH21
|
C:ARG312
|
4.7
|
19.9
|
1.0
|
SG
|
C:CYS308
|
4.8
|
15.3
|
1.0
|
O
|
C:PHE74
|
4.9
|
19.3
|
1.0
|
HG2
|
C:PRO283
|
4.9
|
20.4
|
1.0
|
HG21
|
C:THR142
|
4.9
|
21.6
|
1.0
|
SG
|
C:CYS75
|
4.9
|
16.5
|
1.0
|
SG
|
C:CYS340
|
5.0
|
18.0
|
1.0
|
CB
|
C:CYS308
|
5.0
|
11.8
|
1.0
|
|
Iron binding site 9 out
of 40 in 7yzq
Go back to
Iron Binding Sites List in 7yzq
Iron binding site 9 out
of 40 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe501
b:19.8
occ:1.00
|
FE1
|
D:BJ8501
|
0.0
|
19.8
|
1.0
|
S9
|
D:BJ8501
|
2.2
|
21.0
|
1.0
|
S3
|
D:BJ8501
|
2.3
|
18.0
|
1.0
|
S4
|
D:BJ8501
|
2.3
|
19.9
|
1.0
|
S2
|
D:BJ8501
|
2.3
|
18.8
|
1.0
|
FE4
|
D:BJ8501
|
2.7
|
17.0
|
1.0
|
FE2
|
D:BJ8501
|
2.7
|
19.9
|
1.0
|
FE3
|
D:BJ8501
|
2.7
|
18.2
|
1.0
|
HD13
|
D:LEU115
|
3.5
|
24.3
|
1.0
|
HZ2
|
D:LYS146
|
3.5
|
31.8
|
1.0
|
FE8
|
D:BJ8501
|
3.8
|
26.6
|
1.0
|
HD2
|
D:LYS146
|
3.8
|
26.1
|
1.0
|
S1
|
D:BJ8501
|
3.9
|
18.2
|
1.0
|
HD2
|
D:PRO283
|
4.1
|
31.1
|
1.0
|
HD22
|
D:LEU115
|
4.3
|
21.1
|
1.0
|
NZ
|
D:LYS146
|
4.3
|
26.5
|
1.0
|
CD1
|
D:LEU115
|
4.4
|
20.2
|
1.0
|
HG22
|
D:THR282
|
4.5
|
18.9
|
1.0
|
HE3
|
D:LYS146
|
4.5
|
29.2
|
1.0
|
HG2
|
D:PRO283
|
4.6
|
30.8
|
1.0
|
HZ3
|
D:LYS146
|
4.6
|
31.8
|
1.0
|
S7
|
D:BJ8501
|
4.6
|
24.4
|
1.0
|
CD
|
D:LYS146
|
4.7
|
21.8
|
1.0
|
HB3
|
D:LEU115
|
4.7
|
20.7
|
1.0
|
SG
|
D:CYS143
|
4.7
|
17.7
|
1.0
|
CE
|
D:LYS146
|
4.8
|
24.3
|
1.0
|
HB
|
D:THR282
|
4.8
|
24.1
|
1.0
|
HD11
|
D:LEU115
|
4.8
|
24.3
|
1.0
|
HE2
|
D:TYR376
|
4.8
|
22.9
|
1.0
|
SG
|
D:CYS113
|
4.9
|
20.4
|
1.0
|
HG21
|
D:THR282
|
4.9
|
18.9
|
1.0
|
CD
|
D:PRO283
|
4.9
|
25.9
|
1.0
|
S6
|
D:BJ8501
|
4.9
|
19.3
|
1.0
|
HG3
|
D:PRO283
|
4.9
|
30.8
|
1.0
|
HD12
|
D:LEU115
|
4.9
|
24.3
|
1.0
|
HZ1
|
D:LYS146
|
4.9
|
31.8
|
1.0
|
HB3
|
D:CYS143
|
5.0
|
18.0
|
1.0
|
SG
|
D:CYS373
|
5.0
|
20.8
|
1.0
|
|
Iron binding site 10 out
of 40 in 7yzq
Go back to
Iron Binding Sites List in 7yzq
Iron binding site 10 out
of 40 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe501
b:19.9
occ:1.00
|
FE2
|
D:BJ8501
|
0.0
|
19.9
|
1.0
|
S3
|
D:BJ8501
|
2.2
|
18.0
|
1.0
|
S4
|
D:BJ8501
|
2.3
|
19.9
|
1.0
|
S1
|
D:BJ8501
|
2.3
|
18.2
|
1.0
|
SG
|
D:CYS113
|
2.4
|
20.4
|
1.0
|
FE3
|
D:BJ8501
|
2.6
|
18.2
|
1.0
|
FE4
|
D:BJ8501
|
2.7
|
17.0
|
1.0
|
FE1
|
D:BJ8501
|
2.7
|
19.8
|
1.0
|
HB2
|
D:CYS113
|
3.2
|
20.5
|
1.0
|
CB
|
D:CYS113
|
3.2
|
17.1
|
1.0
|
HB3
|
D:CYS113
|
3.3
|
20.5
|
1.0
|
HB3
|
D:LEU115
|
3.5
|
20.7
|
1.0
|
HD11
|
D:ILE116
|
3.7
|
24.2
|
1.0
|
HB2
|
D:CYS373
|
3.8
|
24.7
|
1.0
|
S2
|
D:BJ8501
|
3.8
|
18.8
|
1.0
|
HG13
|
D:ILE116
|
3.8
|
19.4
|
1.0
|
HD13
|
D:LEU115
|
4.0
|
24.3
|
1.0
|
HD12
|
D:LEU370
|
4.2
|
20.2
|
1.0
|
HA
|
D:CYS373
|
4.2
|
19.4
|
1.0
|
HB2
|
D:LEU115
|
4.3
|
20.7
|
1.0
|
CB
|
D:LEU115
|
4.3
|
17.3
|
1.0
|
HD22
|
D:LEU115
|
4.3
|
21.1
|
1.0
|
HD12
|
D:ILE116
|
4.3
|
24.2
|
1.0
|
CD1
|
D:ILE116
|
4.3
|
20.2
|
1.0
|
CB
|
D:CYS373
|
4.5
|
20.6
|
1.0
|
SG
|
D:CYS373
|
4.5
|
20.8
|
1.0
|
CG1
|
D:ILE116
|
4.5
|
16.1
|
1.0
|
HB2
|
D:LEU370
|
4.6
|
25.8
|
1.0
|
S9
|
D:BJ8501
|
4.7
|
21.0
|
1.0
|
H
|
D:LEU115
|
4.7
|
21.7
|
1.0
|
H
|
D:ILE116
|
4.7
|
21.7
|
1.0
|
CA
|
D:CYS113
|
4.7
|
18.1
|
1.0
|
SG
|
D:CYS143
|
4.8
|
17.7
|
1.0
|
CD1
|
D:LEU115
|
4.9
|
20.2
|
1.0
|
HD2
|
D:LYS146
|
4.9
|
26.1
|
1.0
|
CA
|
D:CYS373
|
4.9
|
16.1
|
1.0
|
HG21
|
D:THR282
|
4.9
|
18.9
|
1.0
|
HG12
|
D:ILE116
|
4.9
|
19.4
|
1.0
|
HA
|
D:CYS113
|
4.9
|
21.7
|
1.0
|
CG
|
D:LEU115
|
5.0
|
20.7
|
1.0
|
|
Reference:
J.H.Jeoung,
S.Nicklisch,
H.Dobbek.
Structural Basis For Coupled Atp-Driven Electron Transfer in the Double-Cubane Cluster Protein. Proc.Natl.Acad.Sci.Usa V. 119 76119 2022.
ISSN: ESSN 1091-6490
PubMed: 35905315
DOI: 10.1073/PNAS.2203576119
Page generated: Fri Aug 9 13:00:58 2024
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