Iron in PDB 7zx3: C295D Mutant of Recombinant Codh-II
Enzymatic activity of C295D Mutant of Recombinant Codh-II
All present enzymatic activity of C295D Mutant of Recombinant Codh-II:
1.2.7.4;
Protein crystallography data
The structure of C295D Mutant of Recombinant Codh-II, PDB code: 7zx3
was solved by
Y.Basak,
J.H.Jeoung,
H.Dobbek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
37.53 /
1.68
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
111.87,
75.05,
71.73,
90,
111.66,
90
|
R / Rfree (%)
|
15 /
18.5
|
Iron Binding Sites:
The binding sites of Iron atom in the C295D Mutant of Recombinant Codh-II
(pdb code 7zx3). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
C295D Mutant of Recombinant Codh-II, PDB code: 7zx3:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 7zx3
Go back to
Iron Binding Sites List in 7zx3
Iron binding site 1 out
of 10 in the C295D Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of C295D Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe701
b:14.3
occ:1.00
|
FE1
|
X:SF4701
|
0.0
|
14.3
|
1.0
|
S2
|
X:SF4701
|
2.2
|
15.5
|
1.0
|
S3
|
X:SF4701
|
2.3
|
14.1
|
1.0
|
S4
|
X:SF4701
|
2.3
|
12.9
|
1.0
|
SG
|
X:CYS56
|
2.3
|
14.2
|
1.0
|
FE2
|
X:SF4701
|
2.7
|
13.7
|
1.0
|
FE3
|
X:SF4701
|
2.7
|
14.1
|
1.0
|
FE4
|
X:SF4701
|
2.7
|
14.0
|
1.0
|
HB2
|
X:CYS56
|
2.9
|
18.0
|
1.0
|
CB
|
X:CYS56
|
3.2
|
15.0
|
1.0
|
H
|
X:ILE69
|
3.3
|
15.9
|
1.0
|
HB
|
X:ILE69
|
3.5
|
16.7
|
1.0
|
HB3
|
X:CYS56
|
3.7
|
18.0
|
1.0
|
S1
|
X:SF4701
|
3.9
|
13.9
|
1.0
|
H
|
X:CYS70
|
3.9
|
19.1
|
1.0
|
HB3
|
X:CYS48
|
4.0
|
16.6
|
1.0
|
N
|
X:ILE69
|
4.0
|
13.3
|
1.0
|
HA2
|
X:GLY54
|
4.0
|
16.1
|
1.0
|
HA3
|
X:GLY54
|
4.1
|
16.1
|
1.0
|
H
|
X:CYS56
|
4.2
|
14.2
|
1.0
|
HA3
|
X:GLY68
|
4.3
|
19.3
|
1.0
|
HD12
|
X:ILE69
|
4.3
|
22.0
|
1.0
|
CA
|
X:CYS56
|
4.4
|
14.4
|
1.0
|
CA
|
X:GLY54
|
4.4
|
13.4
|
1.0
|
CB
|
X:ILE69
|
4.4
|
13.9
|
1.0
|
N
|
X:CYS56
|
4.4
|
11.9
|
1.0
|
HB2
|
X:GLN53
|
4.5
|
16.7
|
1.0
|
N
|
X:GLY54
|
4.5
|
15.1
|
1.0
|
H
|
X:GLY54
|
4.5
|
18.1
|
1.0
|
HA2
|
X:GLY68
|
4.5
|
19.3
|
1.0
|
O
|
X:CYS48
|
4.6
|
12.6
|
1.0
|
SG
|
X:CYS51
|
4.6
|
14.5
|
1.0
|
SG
|
X:CYS48
|
4.6
|
13.9
|
1.0
|
HG13
|
X:ILE69
|
4.7
|
15.6
|
1.0
|
SG
|
X:CYS70
|
4.7
|
15.0
|
1.0
|
N
|
X:CYS70
|
4.7
|
15.9
|
1.0
|
CB
|
X:CYS48
|
4.8
|
13.9
|
1.0
|
CA
|
X:GLY68
|
4.8
|
16.1
|
1.0
|
CA
|
X:ILE69
|
4.8
|
15.2
|
1.0
|
HA
|
X:CYS56
|
4.9
|
17.3
|
1.0
|
C
|
X:GLY68
|
4.9
|
18.4
|
1.0
|
CG1
|
X:ILE69
|
4.9
|
13.0
|
1.0
|
HB3
|
X:CYS70
|
5.0
|
19.4
|
1.0
|
C
|
X:GLN53
|
5.0
|
15.6
|
1.0
|
|
Iron binding site 2 out
of 10 in 7zx3
Go back to
Iron Binding Sites List in 7zx3
Iron binding site 2 out
of 10 in the C295D Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of C295D Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe701
b:13.7
occ:1.00
|
FE2
|
X:SF4701
|
0.0
|
13.7
|
1.0
|
S1
|
X:SF4701
|
2.2
|
13.9
|
1.0
|
S4
|
X:SF4701
|
2.3
|
12.9
|
1.0
|
S3
|
X:SF4701
|
2.3
|
14.1
|
1.0
|
SG
|
X:CYS48
|
2.3
|
13.9
|
1.0
|
FE1
|
X:SF4701
|
2.7
|
14.3
|
1.0
|
FE3
|
X:SF4701
|
2.7
|
14.1
|
1.0
|
FE4
|
X:SF4701
|
2.7
|
14.0
|
1.0
|
HB3
|
X:CYS48
|
2.9
|
16.6
|
1.0
|
H
|
X:HIS50
|
3.2
|
17.4
|
1.0
|
CB
|
X:CYS48
|
3.2
|
13.9
|
1.0
|
HH22
|
X:ARG80
|
3.3
|
17.9
|
1.0
|
HB2
|
X:HIS50
|
3.5
|
16.2
|
1.0
|
HH21
|
X:ARG80
|
3.6
|
17.9
|
1.0
|
NH2
|
X:ARG80
|
3.7
|
14.9
|
1.0
|
S2
|
X:SF4701
|
3.8
|
15.5
|
1.0
|
HB2
|
X:CYS48
|
3.8
|
16.6
|
1.0
|
HB2
|
X:CYS56
|
3.9
|
18.0
|
1.0
|
N
|
X:HIS50
|
4.0
|
14.5
|
1.0
|
H
|
X:CYS51
|
4.0
|
17.6
|
1.0
|
O
|
X:CYS48
|
4.1
|
12.6
|
1.0
|
C
|
X:CYS48
|
4.1
|
14.5
|
1.0
|
CA
|
X:CYS48
|
4.3
|
11.9
|
1.0
|
CB
|
X:HIS50
|
4.3
|
13.5
|
1.0
|
N
|
X:CYS51
|
4.5
|
14.6
|
1.0
|
CA
|
X:HIS50
|
4.5
|
14.7
|
1.0
|
N
|
X:ARG49
|
4.6
|
16.2
|
1.0
|
SG
|
X:CYS56
|
4.7
|
14.2
|
1.0
|
CB
|
X:CYS56
|
4.7
|
15.0
|
1.0
|
HG12
|
X:ILE77
|
4.7
|
17.1
|
1.0
|
C
|
X:HIS50
|
4.7
|
12.9
|
1.0
|
HA
|
X:ARG49
|
4.8
|
18.9
|
1.0
|
HA
|
X:CYS48
|
4.8
|
14.2
|
1.0
|
SG
|
X:CYS70
|
4.9
|
15.0
|
1.0
|
CZ
|
X:ARG80
|
4.9
|
16.2
|
1.0
|
SG
|
X:CYS51
|
4.9
|
14.5
|
1.0
|
HB3
|
X:ALA72
|
4.9
|
21.6
|
1.0
|
C
|
X:ARG49
|
4.9
|
16.6
|
1.0
|
H
|
X:CYS56
|
4.9
|
14.2
|
1.0
|
H
|
X:ARG49
|
5.0
|
19.4
|
1.0
|
|
Iron binding site 3 out
of 10 in 7zx3
Go back to
Iron Binding Sites List in 7zx3
Iron binding site 3 out
of 10 in the C295D Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of C295D Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe701
b:14.1
occ:1.00
|
FE3
|
X:SF4701
|
0.0
|
14.1
|
1.0
|
S4
|
X:SF4701
|
2.2
|
12.9
|
1.0
|
SG
|
X:CYS51
|
2.3
|
14.5
|
1.0
|
S2
|
X:SF4701
|
2.3
|
15.5
|
1.0
|
S1
|
X:SF4701
|
2.3
|
13.9
|
1.0
|
FE2
|
X:SF4701
|
2.7
|
13.7
|
1.0
|
FE1
|
X:SF4701
|
2.7
|
14.3
|
1.0
|
FE4
|
X:SF4701
|
2.8
|
14.0
|
1.0
|
H
|
X:CYS51
|
3.2
|
17.6
|
1.0
|
HB3
|
X:CYS51
|
3.3
|
15.3
|
1.0
|
CB
|
X:CYS51
|
3.3
|
12.8
|
1.0
|
N
|
X:CYS51
|
3.6
|
14.6
|
1.0
|
HB2
|
X:GLN53
|
3.7
|
16.7
|
1.0
|
HG3
|
X:MET199
|
3.7
|
15.2
|
1.0
|
S3
|
X:SF4701
|
3.9
|
14.1
|
1.0
|
CA
|
X:CYS51
|
3.9
|
14.7
|
1.0
|
H
|
X:GLY54
|
4.0
|
18.1
|
1.0
|
HE21
|
X:GLN53
|
4.0
|
22.7
|
1.0
|
HB2
|
X:MET199
|
4.1
|
16.1
|
1.0
|
HB2
|
X:CYS51
|
4.2
|
15.3
|
1.0
|
H
|
X:GLN53
|
4.2
|
18.8
|
1.0
|
C
|
X:CYS51
|
4.2
|
13.8
|
1.0
|
O
|
X:CYS51
|
4.3
|
13.4
|
1.0
|
C
|
X:HIS50
|
4.3
|
12.9
|
1.0
|
HG2
|
X:MET199
|
4.4
|
15.2
|
1.0
|
CG
|
X:MET199
|
4.4
|
12.7
|
1.0
|
H
|
X:HIS50
|
4.4
|
17.4
|
1.0
|
N
|
X:GLY54
|
4.4
|
15.1
|
1.0
|
HB2
|
X:HIS50
|
4.5
|
16.2
|
1.0
|
HB3
|
X:CYS70
|
4.5
|
19.4
|
1.0
|
CB
|
X:GLN53
|
4.6
|
13.9
|
1.0
|
HA3
|
X:GLY54
|
4.6
|
16.1
|
1.0
|
N
|
X:HIS50
|
4.8
|
14.5
|
1.0
|
HA
|
X:CYS51
|
4.8
|
17.7
|
1.0
|
SG
|
X:CYS70
|
4.8
|
15.0
|
1.0
|
SG
|
X:CYS48
|
4.8
|
13.9
|
1.0
|
CB
|
X:MET199
|
4.8
|
13.4
|
1.0
|
SG
|
X:CYS56
|
4.9
|
14.2
|
1.0
|
N
|
X:GLN53
|
4.9
|
15.6
|
1.0
|
NE2
|
X:GLN53
|
4.9
|
18.9
|
1.0
|
H
|
X:CYS70
|
4.9
|
19.1
|
1.0
|
O
|
X:HIS50
|
5.0
|
15.3
|
1.0
|
CA
|
X:GLY54
|
5.0
|
13.4
|
1.0
|
CA
|
X:HIS50
|
5.0
|
14.7
|
1.0
|
HB
|
X:ILE69
|
5.0
|
16.7
|
1.0
|
|
Iron binding site 4 out
of 10 in 7zx3
Go back to
Iron Binding Sites List in 7zx3
Iron binding site 4 out
of 10 in the C295D Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of C295D Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe701
b:14.0
occ:1.00
|
FE4
|
X:SF4701
|
0.0
|
14.0
|
1.0
|
S3
|
X:SF4701
|
2.2
|
14.1
|
1.0
|
SG
|
X:CYS70
|
2.3
|
15.0
|
1.0
|
S2
|
X:SF4701
|
2.3
|
15.5
|
1.0
|
S1
|
X:SF4701
|
2.3
|
13.9
|
1.0
|
FE1
|
X:SF4701
|
2.7
|
14.3
|
1.0
|
FE2
|
X:SF4701
|
2.7
|
13.7
|
1.0
|
FE3
|
X:SF4701
|
2.8
|
14.1
|
1.0
|
H
|
X:CYS70
|
3.1
|
19.1
|
1.0
|
HB3
|
X:CYS70
|
3.2
|
19.4
|
1.0
|
CB
|
X:CYS70
|
3.4
|
16.1
|
1.0
|
HH22
|
X:ARG80
|
3.4
|
17.9
|
1.0
|
N
|
X:CYS70
|
3.9
|
15.9
|
1.0
|
HB2
|
X:ALA72
|
3.9
|
21.6
|
1.0
|
S4
|
X:SF4701
|
3.9
|
12.9
|
1.0
|
HB3
|
X:ALA72
|
3.9
|
21.6
|
1.0
|
HG2
|
X:MET199
|
4.0
|
15.2
|
1.0
|
HB2
|
X:CYS70
|
4.1
|
19.4
|
1.0
|
O
|
X:HOH1044
|
4.1
|
13.4
|
1.0
|
NH2
|
X:ARG80
|
4.2
|
14.9
|
1.0
|
CA
|
X:CYS70
|
4.2
|
13.1
|
1.0
|
H
|
X:ILE69
|
4.3
|
15.9
|
1.0
|
HG3
|
X:MET199
|
4.3
|
15.2
|
1.0
|
H
|
X:ALA72
|
4.3
|
20.0
|
1.0
|
HA3
|
X:GLY68
|
4.4
|
19.3
|
1.0
|
CB
|
X:ALA72
|
4.4
|
18.0
|
1.0
|
HH12
|
X:ARG80
|
4.6
|
17.8
|
1.0
|
HH21
|
X:ARG80
|
4.6
|
17.9
|
1.0
|
CG
|
X:MET199
|
4.6
|
12.7
|
1.0
|
HB
|
X:ILE69
|
4.6
|
16.7
|
1.0
|
N
|
X:ILE69
|
4.6
|
13.3
|
1.0
|
SG
|
X:CYS51
|
4.7
|
14.5
|
1.0
|
SG
|
X:CYS48
|
4.8
|
13.9
|
1.0
|
SG
|
X:CYS56
|
4.8
|
14.2
|
1.0
|
HE21
|
X:GLN53
|
4.9
|
22.7
|
1.0
|
HA
|
X:CYS70
|
5.0
|
15.7
|
1.0
|
HB2
|
X:MET199
|
5.0
|
16.1
|
1.0
|
|
Iron binding site 5 out
of 10 in 7zx3
Go back to
Iron Binding Sites List in 7zx3
Iron binding site 5 out
of 10 in the C295D Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of C295D Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe702
b:16.1
occ:1.00
|
FE1
|
X:FES702
|
0.0
|
16.1
|
1.0
|
SG
|
X:CYS47
|
2.2
|
16.3
|
1.0
|
S1
|
X:FES702
|
2.2
|
16.6
|
1.0
|
S2
|
X:FES702
|
2.3
|
16.9
|
1.0
|
FE2
|
X:FES702
|
2.7
|
15.8
|
1.0
|
HB2
|
X:CYS47
|
3.0
|
23.5
|
1.0
|
CB
|
X:CYS47
|
3.2
|
19.6
|
1.0
|
HB3
|
X:CYS47
|
3.4
|
23.5
|
1.0
|
O
|
X:HOH1112
|
3.6
|
21.0
|
1.0
|
HB2
|
X:PHE41
|
4.2
|
19.1
|
1.0
|
HD2
|
X:ARG49
|
4.3
|
22.8
|
1.0
|
HB2
|
X:PRO55
|
4.5
|
17.3
|
1.0
|
CA
|
X:CYS47
|
4.6
|
12.2
|
1.0
|
HA
|
X:CYS47
|
4.7
|
14.7
|
1.0
|
SG
|
X:CYS39
|
4.7
|
17.3
|
1.0
|
HB3
|
X:PHE41
|
4.8
|
19.1
|
1.0
|
HG3
|
X:ARG49
|
4.8
|
18.1
|
1.0
|
H
|
X:GLY42
|
4.8
|
17.9
|
1.0
|
HB3
|
X:PRO55
|
4.8
|
17.3
|
1.0
|
HB3
|
X:ARG57
|
4.8
|
20.0
|
1.0
|
CB
|
X:PHE41
|
4.9
|
15.9
|
1.0
|
HA2
|
X:GLY42
|
4.9
|
22.6
|
1.0
|
HA3
|
X:GLY42
|
5.0
|
22.6
|
1.0
|
|
Iron binding site 6 out
of 10 in 7zx3
Go back to
Iron Binding Sites List in 7zx3
Iron binding site 6 out
of 10 in the C295D Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of C295D Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe702
b:15.8
occ:1.00
|
FE2
|
X:FES702
|
0.0
|
15.8
|
1.0
|
S2
|
X:FES702
|
2.2
|
16.9
|
1.0
|
SG
|
X:CYS39
|
2.3
|
17.3
|
1.0
|
S1
|
X:FES702
|
2.3
|
16.6
|
1.0
|
FE1
|
X:FES702
|
2.7
|
16.1
|
1.0
|
CB
|
X:CYS39
|
3.2
|
14.2
|
1.0
|
HB3
|
X:CYS39
|
3.2
|
17.1
|
1.0
|
HB2
|
X:CYS39
|
3.3
|
17.1
|
1.0
|
HB2
|
X:PHE41
|
3.5
|
19.1
|
1.0
|
H
|
X:GLY42
|
3.6
|
17.9
|
1.0
|
H11
|
X:PEG706
|
3.9
|
35.6
|
1.0
|
HD2
|
X:PHE41
|
4.0
|
17.7
|
1.0
|
H12
|
X:PEG706
|
4.0
|
35.6
|
1.0
|
N
|
X:GLY42
|
4.2
|
14.9
|
1.0
|
HA3
|
X:GLY42
|
4.3
|
22.6
|
1.0
|
CB
|
X:PHE41
|
4.4
|
15.9
|
1.0
|
C1
|
X:PEG706
|
4.4
|
29.7
|
1.0
|
HB2
|
X:CYS47
|
4.5
|
23.5
|
1.0
|
CA
|
X:CYS39
|
4.6
|
16.4
|
1.0
|
H
|
X:PHE41
|
4.7
|
19.8
|
1.0
|
CA
|
X:GLY42
|
4.8
|
18.8
|
1.0
|
HB3
|
X:PHE41
|
4.8
|
19.1
|
1.0
|
SG
|
X:CYS47
|
4.8
|
16.3
|
1.0
|
CD2
|
X:PHE41
|
4.8
|
14.7
|
1.0
|
HA
|
X:CYS39
|
4.9
|
19.6
|
1.0
|
|
Iron binding site 7 out
of 10 in 7zx3
Go back to
Iron Binding Sites List in 7zx3
Iron binding site 7 out
of 10 in the C295D Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of C295D Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe703
b:21.4
occ:0.60
|
FE1
|
X:SF4703
|
0.0
|
21.4
|
0.6
|
SG
|
X:CYS333
|
2.2
|
20.6
|
1.0
|
S2
|
X:SF4703
|
2.2
|
28.8
|
1.0
|
S3
|
X:SF4703
|
2.3
|
20.4
|
0.8
|
S4
|
X:SF4703
|
2.4
|
19.5
|
0.6
|
FE3
|
X:SF4703
|
2.5
|
23.7
|
0.7
|
FE4
|
X:SF4703
|
2.6
|
19.6
|
0.6
|
FE2
|
X:SF4703
|
2.7
|
26.1
|
0.7
|
HE2
|
X:HIS261
|
2.9
|
31.5
|
1.0
|
HB3
|
X:CYS333
|
3.0
|
25.8
|
1.0
|
CB
|
X:CYS333
|
3.1
|
21.5
|
1.0
|
HB2
|
X:CYS333
|
3.3
|
25.8
|
1.0
|
O
|
X:HOH1165
|
3.3
|
26.9
|
0.8
|
HZ1
|
X:LYS563
|
3.4
|
28.4
|
1.0
|
HE1
|
X:HIS261
|
3.6
|
29.7
|
1.0
|
NE2
|
X:HIS261
|
3.6
|
26.3
|
1.0
|
S1
|
X:SF4703
|
3.7
|
22.3
|
0.7
|
O
|
X:HOH825
|
3.8
|
28.9
|
1.0
|
CE1
|
X:HIS261
|
3.9
|
24.7
|
1.0
|
HZ2
|
X:LYS563
|
4.0
|
28.4
|
1.0
|
NZ
|
X:LYS563
|
4.1
|
23.6
|
1.0
|
HB2
|
X:HIS561
|
4.2
|
17.8
|
1.0
|
HE1
|
X:MET560
|
4.3
|
22.7
|
1.0
|
HE3
|
X:MET560
|
4.4
|
22.7
|
1.0
|
HE3
|
X:LYS563
|
4.4
|
22.5
|
1.0
|
CA
|
X:CYS333
|
4.5
|
16.8
|
1.0
|
HA
|
X:CYS333
|
4.6
|
20.2
|
1.0
|
O
|
X:HOH1135
|
4.6
|
36.6
|
0.7
|
HB3
|
X:CYS446
|
4.6
|
18.0
|
1.0
|
SG
|
X:CYS446
|
4.6
|
20.4
|
1.0
|
O
|
X:HOH983
|
4.7
|
25.1
|
1.0
|
HZ3
|
X:LYS563
|
4.7
|
28.4
|
1.0
|
HD2
|
X:HIS561
|
4.8
|
16.0
|
1.0
|
CE
|
X:MET560
|
4.8
|
18.9
|
1.0
|
CE
|
X:LYS563
|
4.8
|
18.7
|
1.0
|
SG
|
X:CYS476
|
4.8
|
28.9
|
1.0
|
HB3
|
X:HIS561
|
4.8
|
17.8
|
1.0
|
CB
|
X:HIS561
|
4.9
|
14.8
|
1.0
|
CD2
|
X:HIS261
|
4.9
|
26.3
|
1.0
|
HB3
|
X:CYS294
|
4.9
|
29.6
|
1.0
|
|
Iron binding site 8 out
of 10 in 7zx3
Go back to
Iron Binding Sites List in 7zx3
Iron binding site 8 out
of 10 in the C295D Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of C295D Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe703
b:26.1
occ:0.66
|
FE2
|
X:SF4703
|
0.0
|
26.1
|
0.7
|
O
|
X:HOH825
|
2.2
|
28.9
|
1.0
|
S1
|
X:SF4703
|
2.3
|
22.3
|
0.7
|
S4
|
X:SF4703
|
2.4
|
19.5
|
0.6
|
SG
|
X:CYS526
|
2.4
|
17.8
|
0.5
|
S3
|
X:SF4703
|
2.4
|
20.4
|
0.8
|
FE1
|
X:SF4703
|
2.7
|
21.4
|
0.6
|
FE3
|
X:SF4703
|
2.8
|
23.7
|
0.7
|
FE4
|
X:SF4703
|
2.8
|
19.6
|
0.6
|
HB2
|
X:CYS526
|
2.8
|
25.6
|
0.5
|
O
|
X:HOH1135
|
2.9
|
36.6
|
0.7
|
HE2
|
X:HIS261
|
3.0
|
31.5
|
1.0
|
HB2
|
X:CYS526
|
3.5
|
25.5
|
0.5
|
OD2
|
X:ASP295
|
3.5
|
19.3
|
1.0
|
HZ2
|
X:LYS563
|
3.6
|
28.4
|
1.0
|
CB
|
X:CYS526
|
3.6
|
21.3
|
0.5
|
CB
|
X:CYS526
|
3.6
|
21.3
|
0.5
|
NE2
|
X:HIS261
|
3.8
|
26.3
|
1.0
|
HB3
|
X:CYS526
|
3.9
|
25.6
|
0.5
|
SG
|
X:CYS526
|
4.0
|
21.9
|
0.5
|
HB3
|
X:CYS526
|
4.0
|
25.5
|
0.5
|
S2
|
X:SF4703
|
4.1
|
28.8
|
1.0
|
HZ1
|
X:LYS563
|
4.1
|
28.4
|
1.0
|
CG
|
X:ASP295
|
4.1
|
19.8
|
1.0
|
H
|
X:CYS476
|
4.2
|
22.1
|
1.0
|
HG
|
X:CYS526
|
4.2
|
26.3
|
0.5
|
HA3
|
X:GLY475
|
4.2
|
19.1
|
1.0
|
NZ
|
X:LYS563
|
4.3
|
23.6
|
1.0
|
HD2
|
X:HIS261
|
4.4
|
31.6
|
1.0
|
O
|
X:HOH1165
|
4.5
|
26.9
|
0.8
|
HB2
|
X:ASP295
|
4.5
|
21.9
|
1.0
|
SG
|
X:CYS333
|
4.5
|
20.6
|
1.0
|
CD2
|
X:HIS261
|
4.6
|
26.3
|
1.0
|
H
|
X:CYS526
|
4.6
|
18.9
|
0.5
|
H
|
X:CYS526
|
4.6
|
18.9
|
0.5
|
HA2
|
X:GLY475
|
4.6
|
19.1
|
1.0
|
OD1
|
X:ASP295
|
4.6
|
17.5
|
1.0
|
HA2
|
X:GLY445
|
4.7
|
19.4
|
1.0
|
HE3
|
X:LYS563
|
4.8
|
22.5
|
1.0
|
CA
|
X:GLY475
|
4.9
|
15.9
|
1.0
|
CE1
|
X:HIS261
|
4.9
|
24.7
|
1.0
|
CA
|
X:CYS526
|
4.9
|
15.5
|
0.5
|
HZ3
|
X:LYS563
|
4.9
|
28.4
|
1.0
|
CA
|
X:CYS526
|
4.9
|
15.5
|
0.5
|
SG
|
X:CYS476
|
4.9
|
28.9
|
1.0
|
N
|
X:CYS476
|
4.9
|
18.4
|
1.0
|
CB
|
X:ASP295
|
4.9
|
18.3
|
1.0
|
O
|
X:HOH1049
|
4.9
|
27.4
|
1.0
|
SG
|
X:CYS446
|
5.0
|
20.4
|
1.0
|
|
Iron binding site 9 out
of 10 in 7zx3
Go back to
Iron Binding Sites List in 7zx3
Iron binding site 9 out
of 10 in the C295D Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of C295D Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe703
b:23.7
occ:0.72
|
FE3
|
X:SF4703
|
0.0
|
23.7
|
0.7
|
S1
|
X:SF4703
|
2.3
|
22.3
|
0.7
|
S4
|
X:SF4703
|
2.3
|
19.5
|
0.6
|
S2
|
X:SF4703
|
2.4
|
28.8
|
1.0
|
SG
|
X:CYS446
|
2.4
|
20.4
|
1.0
|
FE1
|
X:SF4703
|
2.5
|
21.4
|
0.6
|
FE4
|
X:SF4703
|
2.6
|
19.6
|
0.6
|
FE2
|
X:SF4703
|
2.8
|
26.1
|
0.7
|
HB3
|
X:CYS446
|
2.9
|
18.0
|
1.0
|
CB
|
X:CYS446
|
3.1
|
15.0
|
1.0
|
HA
|
X:CYS446
|
3.2
|
20.9
|
1.0
|
CA
|
X:CYS446
|
3.5
|
17.4
|
1.0
|
HB2
|
X:HIS561
|
3.6
|
17.8
|
1.0
|
N
|
X:CYS446
|
3.8
|
18.6
|
1.0
|
HE3
|
X:MET560
|
3.8
|
22.7
|
1.0
|
S3
|
X:SF4703
|
3.8
|
20.4
|
0.8
|
HB2
|
X:CYS446
|
4.0
|
18.0
|
1.0
|
HA2
|
X:GLY445
|
4.0
|
19.4
|
1.0
|
C
|
X:GLY445
|
4.0
|
19.2
|
1.0
|
HB3
|
X:HIS561
|
4.1
|
17.8
|
1.0
|
H
|
X:CYS446
|
4.1
|
22.3
|
1.0
|
H
|
X:HIS561
|
4.2
|
18.9
|
1.0
|
SG
|
X:CYS333
|
4.2
|
20.6
|
1.0
|
CB
|
X:HIS561
|
4.3
|
14.8
|
1.0
|
HB2
|
X:CYS476
|
4.4
|
24.3
|
1.0
|
HB2
|
X:ALA564
|
4.4
|
19.1
|
1.0
|
O
|
X:GLY445
|
4.4
|
21.9
|
1.0
|
O
|
X:HOH1135
|
4.5
|
36.6
|
0.7
|
SG
|
X:CYS526
|
4.5
|
17.8
|
0.5
|
O
|
X:HOH1165
|
4.5
|
26.9
|
0.8
|
CA
|
X:GLY445
|
4.6
|
16.2
|
1.0
|
HE1
|
X:MET560
|
4.6
|
22.7
|
1.0
|
HB3
|
X:MET560
|
4.6
|
19.8
|
1.0
|
CE
|
X:MET560
|
4.6
|
18.9
|
1.0
|
SG
|
X:CYS476
|
4.7
|
28.9
|
1.0
|
H
|
X:CYS476
|
4.7
|
22.1
|
1.0
|
O
|
X:HOH825
|
4.8
|
28.9
|
1.0
|
HG
|
X:SER312
|
4.8
|
24.6
|
1.0
|
HE2
|
X:HIS261
|
4.8
|
31.5
|
1.0
|
N
|
X:HIS561
|
4.9
|
15.8
|
1.0
|
C
|
X:CYS446
|
4.9
|
17.5
|
1.0
|
|
Iron binding site 10 out
of 10 in 7zx3
Go back to
Iron Binding Sites List in 7zx3
Iron binding site 10 out
of 10 in the C295D Mutant of Recombinant Codh-II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of C295D Mutant of Recombinant Codh-II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Fe703
b:19.6
occ:0.55
|
FE4
|
X:SF4703
|
0.0
|
19.6
|
0.6
|
S3
|
X:SF4703
|
2.2
|
20.4
|
0.8
|
S1
|
X:SF4703
|
2.2
|
22.3
|
0.7
|
S2
|
X:SF4703
|
2.2
|
28.8
|
1.0
|
O
|
X:HOH1165
|
2.2
|
26.9
|
0.8
|
SG
|
X:CYS476
|
2.4
|
28.9
|
1.0
|
FE1
|
X:SF4703
|
2.6
|
21.4
|
0.6
|
FE3
|
X:SF4703
|
2.6
|
23.7
|
0.7
|
FE2
|
X:SF4703
|
2.8
|
26.1
|
0.7
|
HB2
|
X:CYS476
|
3.2
|
24.3
|
1.0
|
HA
|
X:CYS446
|
3.3
|
20.9
|
1.0
|
H
|
X:CYS476
|
3.4
|
22.1
|
1.0
|
CB
|
X:CYS476
|
3.4
|
20.2
|
1.0
|
O
|
X:HOH1134
|
3.8
|
33.6
|
1.0
|
HB2
|
X:SER312
|
3.9
|
36.8
|
1.0
|
S4
|
X:SF4703
|
3.9
|
19.5
|
0.6
|
N
|
X:CYS476
|
4.0
|
18.4
|
1.0
|
HB3
|
X:CYS446
|
4.0
|
18.0
|
1.0
|
HG
|
X:SER312
|
4.0
|
24.6
|
1.0
|
HB3
|
X:CYS476
|
4.1
|
24.3
|
1.0
|
CA
|
X:CYS446
|
4.2
|
17.4
|
1.0
|
CA
|
X:CYS476
|
4.3
|
18.8
|
1.0
|
O
|
X:GLY445
|
4.4
|
21.9
|
1.0
|
HE2
|
X:HIS261
|
4.4
|
31.5
|
1.0
|
CB
|
X:CYS446
|
4.4
|
15.0
|
1.0
|
HB3
|
X:CYS333
|
4.5
|
25.8
|
1.0
|
OG
|
X:SER312
|
4.6
|
20.5
|
1.0
|
CB
|
X:SER312
|
4.6
|
30.7
|
1.0
|
HA
|
X:SER312
|
4.7
|
28.3
|
1.0
|
O
|
X:HOH825
|
4.7
|
28.9
|
1.0
|
SG
|
X:CYS333
|
4.7
|
20.6
|
1.0
|
HA
|
X:CYS476
|
4.7
|
22.6
|
1.0
|
SG
|
X:CYS446
|
4.7
|
20.4
|
1.0
|
SG
|
X:CYS526
|
4.7
|
17.8
|
0.5
|
C
|
X:GLY445
|
4.7
|
19.2
|
1.0
|
N
|
X:CYS446
|
4.8
|
18.6
|
1.0
|
SG
|
X:CYS294
|
4.8
|
26.5
|
1.0
|
H
|
X:ASN447
|
4.8
|
20.4
|
1.0
|
HB3
|
X:CYS294
|
4.8
|
29.6
|
1.0
|
HA
|
X:CYS294
|
4.8
|
24.5
|
1.0
|
HA3
|
X:GLY475
|
4.8
|
19.1
|
1.0
|
C
|
X:GLY475
|
5.0
|
16.9
|
1.0
|
CB
|
X:CYS333
|
5.0
|
21.5
|
1.0
|
|
Reference:
Y.Basak,
J.H.Jeoung,
L.Domnik,
J.Ruickoldt,
H.Dobbek.
Substrate Activation at the Ni,Fe Cluster of Co Dehydrogenases: the Influence of the Protein Matrix Acs Catalysis 2022.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.2C02922
Page generated: Fri Aug 9 15:43:55 2024
|