Iron in PDB 8eqm: Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light
Other elements in 8eqm:
The structure of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light
(pdb code 8eqm). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the
Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light, PDB code: 8eqm:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
Iron binding site 1 out
of 6 in 8eqm
Go back to
Iron Binding Sites List in 8eqm
Iron binding site 1 out
of 6 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe402
b:27.5
occ:1.00
|
O1
|
A:BCT411
|
1.6
|
22.1
|
1.0
|
O3
|
A:BCT411
|
2.1
|
22.1
|
1.0
|
NE2
|
D:HIS214
|
2.1
|
13.7
|
1.0
|
NE2
|
A:HIS273
|
2.1
|
17.8
|
1.0
|
C
|
A:BCT411
|
2.2
|
22.1
|
1.0
|
NE2
|
D:HIS268
|
2.3
|
14.7
|
1.0
|
NE2
|
A:HIS216
|
2.3
|
18.1
|
1.0
|
CE1
|
D:HIS214
|
2.8
|
13.7
|
1.0
|
CE1
|
A:HIS273
|
2.9
|
17.8
|
1.0
|
CE1
|
D:HIS268
|
3.1
|
14.7
|
1.0
|
CE1
|
A:HIS216
|
3.1
|
18.1
|
1.0
|
CD2
|
A:HIS273
|
3.3
|
17.8
|
1.0
|
CD2
|
D:HIS214
|
3.3
|
13.7
|
1.0
|
O2
|
A:BCT411
|
3.4
|
22.1
|
1.0
|
CD2
|
D:HIS268
|
3.4
|
14.7
|
1.0
|
CD2
|
A:HIS216
|
3.4
|
18.1
|
1.0
|
ND1
|
D:HIS214
|
4.0
|
13.7
|
1.0
|
ND1
|
A:HIS273
|
4.1
|
17.8
|
1.0
|
ND1
|
D:HIS268
|
4.3
|
14.7
|
1.0
|
CG
|
D:HIS214
|
4.3
|
13.7
|
1.0
|
ND1
|
A:HIS216
|
4.3
|
18.1
|
1.0
|
CG
|
A:HIS273
|
4.3
|
17.8
|
1.0
|
CG
|
D:HIS268
|
4.4
|
14.7
|
1.0
|
CG
|
A:HIS216
|
4.5
|
18.1
|
1.0
|
OH
|
D:TYR244
|
4.6
|
16.1
|
1.0
|
CG2
|
D:VAL218
|
4.7
|
13.2
|
1.0
|
CG2
|
A:VAL220
|
4.8
|
18.6
|
1.0
|
|
Iron binding site 2 out
of 6 in 8eqm
Go back to
Iron Binding Sites List in 8eqm
Iron binding site 2 out
of 6 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe101
b:73.7
occ:1.00
|
FE
|
E:HEM101
|
0.0
|
73.7
|
1.0
|
NC
|
E:HEM101
|
2.0
|
73.7
|
1.0
|
NB
|
E:HEM101
|
2.0
|
73.7
|
1.0
|
NA
|
E:HEM101
|
2.0
|
73.7
|
1.0
|
ND
|
E:HEM101
|
2.1
|
73.7
|
1.0
|
NE2
|
E:HIS23
|
2.1
|
75.2
|
1.0
|
CE1
|
E:HIS23
|
2.2
|
75.2
|
1.0
|
NE2
|
F:HIS23
|
2.9
|
68.8
|
1.0
|
C1C
|
E:HEM101
|
3.0
|
73.7
|
1.0
|
CE1
|
F:HIS23
|
3.0
|
68.8
|
1.0
|
C4C
|
E:HEM101
|
3.0
|
73.7
|
1.0
|
C4B
|
E:HEM101
|
3.0
|
73.7
|
1.0
|
C1A
|
E:HEM101
|
3.0
|
73.7
|
1.0
|
C1B
|
E:HEM101
|
3.1
|
73.7
|
1.0
|
C4A
|
E:HEM101
|
3.1
|
73.7
|
1.0
|
C1D
|
E:HEM101
|
3.1
|
73.7
|
1.0
|
C4D
|
E:HEM101
|
3.1
|
73.7
|
1.0
|
CD2
|
E:HIS23
|
3.2
|
75.2
|
1.0
|
ND1
|
E:HIS23
|
3.4
|
75.2
|
1.0
|
CHC
|
E:HEM101
|
3.4
|
73.7
|
1.0
|
CHD
|
E:HEM101
|
3.4
|
73.7
|
1.0
|
CHA
|
E:HEM101
|
3.4
|
73.7
|
1.0
|
CHB
|
E:HEM101
|
3.4
|
73.7
|
1.0
|
CG
|
E:HIS23
|
3.8
|
75.2
|
1.0
|
CD2
|
F:HIS23
|
4.0
|
68.8
|
1.0
|
ND1
|
F:HIS23
|
4.1
|
68.8
|
1.0
|
C2C
|
E:HEM101
|
4.2
|
73.7
|
1.0
|
C3C
|
E:HEM101
|
4.2
|
73.7
|
1.0
|
C2A
|
E:HEM101
|
4.3
|
73.7
|
1.0
|
C3A
|
E:HEM101
|
4.3
|
73.7
|
1.0
|
C3B
|
E:HEM101
|
4.3
|
73.7
|
1.0
|
C2B
|
E:HEM101
|
4.3
|
73.7
|
1.0
|
C2D
|
E:HEM101
|
4.3
|
73.7
|
1.0
|
C3D
|
E:HEM101
|
4.3
|
73.7
|
1.0
|
CG
|
F:HIS23
|
4.6
|
68.8
|
1.0
|
NE1
|
F:TRP19
|
4.9
|
77.6
|
1.0
|
|
Iron binding site 3 out
of 6 in 8eqm
Go back to
Iron Binding Sites List in 8eqm
Iron binding site 3 out
of 6 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
V:Fe201
b:90.5
occ:1.00
|
FE
|
V:HEM201
|
0.0
|
90.5
|
1.0
|
ND
|
V:HEM201
|
2.0
|
90.5
|
1.0
|
NA
|
V:HEM201
|
2.0
|
90.5
|
1.0
|
NC
|
V:HEM201
|
2.0
|
90.5
|
1.0
|
NE2
|
V:HIS75
|
2.1
|
88.2
|
1.0
|
NB
|
V:HEM201
|
2.1
|
90.5
|
1.0
|
CD2
|
V:HIS75
|
2.4
|
88.2
|
1.0
|
NE2
|
V:HIS126
|
2.7
|
88.1
|
1.0
|
C1D
|
V:HEM201
|
3.0
|
90.5
|
1.0
|
C4C
|
V:HEM201
|
3.0
|
90.5
|
1.0
|
C1C
|
V:HEM201
|
3.0
|
90.5
|
1.0
|
C4A
|
V:HEM201
|
3.1
|
90.5
|
1.0
|
C1A
|
V:HEM201
|
3.1
|
90.5
|
1.0
|
C1B
|
V:HEM201
|
3.1
|
90.5
|
1.0
|
C4D
|
V:HEM201
|
3.1
|
90.5
|
1.0
|
C4B
|
V:HEM201
|
3.1
|
90.5
|
1.0
|
CE1
|
V:HIS75
|
3.3
|
88.2
|
1.0
|
CHD
|
V:HEM201
|
3.4
|
90.5
|
1.0
|
CHB
|
V:HEM201
|
3.4
|
90.5
|
1.0
|
CHC
|
V:HEM201
|
3.4
|
90.5
|
1.0
|
CHA
|
V:HEM201
|
3.5
|
90.5
|
1.0
|
CE1
|
V:HIS126
|
3.6
|
88.1
|
1.0
|
CD2
|
V:HIS126
|
3.6
|
88.1
|
1.0
|
CG
|
V:HIS75
|
3.7
|
88.2
|
1.0
|
ND1
|
V:HIS75
|
4.0
|
88.2
|
1.0
|
C2C
|
V:HEM201
|
4.2
|
90.5
|
1.0
|
C3C
|
V:HEM201
|
4.2
|
90.5
|
1.0
|
C2D
|
V:HEM201
|
4.3
|
90.5
|
1.0
|
C2A
|
V:HEM201
|
4.3
|
90.5
|
1.0
|
C3A
|
V:HEM201
|
4.3
|
90.5
|
1.0
|
C3D
|
V:HEM201
|
4.3
|
90.5
|
1.0
|
C2B
|
V:HEM201
|
4.3
|
90.5
|
1.0
|
C3B
|
V:HEM201
|
4.3
|
90.5
|
1.0
|
ND1
|
V:HIS126
|
4.7
|
88.1
|
1.0
|
CG
|
V:HIS126
|
4.7
|
88.1
|
1.0
|
CB
|
V:HIS75
|
4.9
|
88.2
|
1.0
|
|
Iron binding site 4 out
of 6 in 8eqm
Go back to
Iron Binding Sites List in 8eqm
Iron binding site 4 out
of 6 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Fe402
b:27.5
occ:1.00
|
O1
|
a:BCT411
|
1.6
|
22.1
|
1.0
|
O3
|
a:BCT411
|
2.1
|
22.1
|
1.0
|
NE2
|
d:HIS214
|
2.1
|
13.7
|
1.0
|
NE2
|
a:HIS273
|
2.1
|
17.8
|
1.0
|
C
|
a:BCT411
|
2.2
|
22.1
|
1.0
|
NE2
|
d:HIS268
|
2.3
|
14.7
|
1.0
|
NE2
|
a:HIS216
|
2.3
|
18.1
|
1.0
|
CE1
|
d:HIS214
|
2.8
|
13.7
|
1.0
|
CE1
|
a:HIS273
|
2.9
|
17.8
|
1.0
|
CE1
|
d:HIS268
|
3.1
|
14.7
|
1.0
|
CE1
|
a:HIS216
|
3.1
|
18.1
|
1.0
|
CD2
|
a:HIS273
|
3.3
|
17.8
|
1.0
|
CD2
|
d:HIS214
|
3.3
|
13.7
|
1.0
|
O2
|
a:BCT411
|
3.4
|
22.1
|
1.0
|
CD2
|
d:HIS268
|
3.4
|
14.7
|
1.0
|
CD2
|
a:HIS216
|
3.4
|
18.1
|
1.0
|
ND1
|
d:HIS214
|
4.0
|
13.7
|
1.0
|
ND1
|
a:HIS273
|
4.1
|
17.8
|
1.0
|
ND1
|
d:HIS268
|
4.3
|
14.7
|
1.0
|
CG
|
d:HIS214
|
4.3
|
13.7
|
1.0
|
ND1
|
a:HIS216
|
4.3
|
18.1
|
1.0
|
CG
|
a:HIS273
|
4.3
|
17.8
|
1.0
|
CG
|
d:HIS268
|
4.4
|
14.7
|
1.0
|
CG
|
a:HIS216
|
4.5
|
18.1
|
1.0
|
OH
|
d:TYR244
|
4.6
|
16.1
|
1.0
|
CG2
|
d:VAL218
|
4.7
|
13.2
|
1.0
|
CG2
|
a:VAL220
|
4.8
|
18.6
|
1.0
|
|
Iron binding site 5 out
of 6 in 8eqm
Go back to
Iron Binding Sites List in 8eqm
Iron binding site 5 out
of 6 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
e:Fe101
b:73.7
occ:1.00
|
FE
|
e:HEM101
|
0.0
|
73.7
|
1.0
|
NC
|
e:HEM101
|
2.0
|
73.7
|
1.0
|
NB
|
e:HEM101
|
2.0
|
73.7
|
1.0
|
NA
|
e:HEM101
|
2.0
|
73.7
|
1.0
|
ND
|
e:HEM101
|
2.1
|
73.7
|
1.0
|
NE2
|
e:HIS23
|
2.1
|
75.2
|
1.0
|
CE1
|
e:HIS23
|
2.2
|
75.2
|
1.0
|
NE2
|
f:HIS23
|
2.9
|
68.8
|
1.0
|
C1C
|
e:HEM101
|
3.0
|
73.7
|
1.0
|
CE1
|
f:HIS23
|
3.0
|
68.8
|
1.0
|
C4C
|
e:HEM101
|
3.0
|
73.7
|
1.0
|
C4B
|
e:HEM101
|
3.0
|
73.7
|
1.0
|
C1A
|
e:HEM101
|
3.0
|
73.7
|
1.0
|
C1B
|
e:HEM101
|
3.1
|
73.7
|
1.0
|
C4A
|
e:HEM101
|
3.1
|
73.7
|
1.0
|
C1D
|
e:HEM101
|
3.1
|
73.7
|
1.0
|
C4D
|
e:HEM101
|
3.1
|
73.7
|
1.0
|
CD2
|
e:HIS23
|
3.2
|
75.2
|
1.0
|
ND1
|
e:HIS23
|
3.4
|
75.2
|
1.0
|
CHC
|
e:HEM101
|
3.4
|
73.7
|
1.0
|
CHD
|
e:HEM101
|
3.4
|
73.7
|
1.0
|
CHA
|
e:HEM101
|
3.4
|
73.7
|
1.0
|
CHB
|
e:HEM101
|
3.4
|
73.7
|
1.0
|
CG
|
e:HIS23
|
3.9
|
75.2
|
1.0
|
CD2
|
f:HIS23
|
4.0
|
68.8
|
1.0
|
ND1
|
f:HIS23
|
4.1
|
68.8
|
1.0
|
C2C
|
e:HEM101
|
4.2
|
73.7
|
1.0
|
C3C
|
e:HEM101
|
4.2
|
73.7
|
1.0
|
C2A
|
e:HEM101
|
4.3
|
73.7
|
1.0
|
C3A
|
e:HEM101
|
4.3
|
73.7
|
1.0
|
C3B
|
e:HEM101
|
4.3
|
73.7
|
1.0
|
C2B
|
e:HEM101
|
4.3
|
73.7
|
1.0
|
C2D
|
e:HEM101
|
4.3
|
73.7
|
1.0
|
C3D
|
e:HEM101
|
4.3
|
73.7
|
1.0
|
CG
|
f:HIS23
|
4.6
|
68.8
|
1.0
|
NE1
|
f:TRP19
|
4.9
|
77.6
|
1.0
|
|
Iron binding site 6 out
of 6 in 8eqm
Go back to
Iron Binding Sites List in 8eqm
Iron binding site 6 out
of 6 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
v:Fe201
b:90.5
occ:1.00
|
FE
|
v:HEM201
|
0.0
|
90.5
|
1.0
|
ND
|
v:HEM201
|
2.0
|
90.5
|
1.0
|
NA
|
v:HEM201
|
2.0
|
90.5
|
1.0
|
NC
|
v:HEM201
|
2.0
|
90.5
|
1.0
|
NE2
|
v:HIS75
|
2.1
|
88.2
|
1.0
|
NB
|
v:HEM201
|
2.1
|
90.5
|
1.0
|
CD2
|
v:HIS75
|
2.4
|
88.2
|
1.0
|
NE2
|
v:HIS126
|
2.7
|
88.1
|
1.0
|
C1D
|
v:HEM201
|
3.0
|
90.5
|
1.0
|
C4C
|
v:HEM201
|
3.0
|
90.5
|
1.0
|
C1C
|
v:HEM201
|
3.0
|
90.5
|
1.0
|
C4A
|
v:HEM201
|
3.1
|
90.5
|
1.0
|
C1A
|
v:HEM201
|
3.1
|
90.5
|
1.0
|
C1B
|
v:HEM201
|
3.1
|
90.5
|
1.0
|
C4D
|
v:HEM201
|
3.1
|
90.5
|
1.0
|
C4B
|
v:HEM201
|
3.1
|
90.5
|
1.0
|
CE1
|
v:HIS75
|
3.3
|
88.2
|
1.0
|
CHD
|
v:HEM201
|
3.4
|
90.5
|
1.0
|
CHB
|
v:HEM201
|
3.4
|
90.5
|
1.0
|
CHC
|
v:HEM201
|
3.4
|
90.5
|
1.0
|
CHA
|
v:HEM201
|
3.5
|
90.5
|
1.0
|
CE1
|
v:HIS126
|
3.6
|
88.1
|
1.0
|
CD2
|
v:HIS126
|
3.6
|
88.1
|
1.0
|
CG
|
v:HIS75
|
3.7
|
88.2
|
1.0
|
ND1
|
v:HIS75
|
4.0
|
88.2
|
1.0
|
C2C
|
v:HEM201
|
4.2
|
90.5
|
1.0
|
C3C
|
v:HEM201
|
4.2
|
90.5
|
1.0
|
C2D
|
v:HEM201
|
4.3
|
90.5
|
1.0
|
C2A
|
v:HEM201
|
4.3
|
90.5
|
1.0
|
C3A
|
v:HEM201
|
4.3
|
90.5
|
1.0
|
C3D
|
v:HEM201
|
4.3
|
90.5
|
1.0
|
C2B
|
v:HEM201
|
4.3
|
90.5
|
1.0
|
C3B
|
v:HEM201
|
4.3
|
90.5
|
1.0
|
ND1
|
v:HIS126
|
4.7
|
88.1
|
1.0
|
CG
|
v:HIS126
|
4.7
|
88.1
|
1.0
|
CB
|
v:HIS75
|
4.9
|
88.2
|
1.0
|
|
Reference:
C.J.Gisriel,
G.Shen,
D.A.Flesher,
V.Kurashov,
J.H.Golbeck,
G.W.Brudvig,
M.Amin,
D.A.Bryant.
Structure of A Dimeric Photosystem II Complex From A Cyanobacterium Acclimated to Far-Red Light. J.Biol.Chem. 02815 2022.
ISSN: ESSN 1083-351X
PubMed: 36549647
DOI: 10.1016/J.JBC.2022.102815
Page generated: Sat Aug 10 02:25:28 2024
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