Iron in PDB 8gbt: Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase

Enzymatic activity of Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase

All present enzymatic activity of Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase:
1.9.3.1;

Protein crystallography data

The structure of Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase, PDB code: 8gbt was solved by I.Ishigami, S.-R.Yeh, D.L.Rousseau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.00 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 178.3, 189, 209, 90, 90, 90
R / Rfree (%) 22.3 / 26.9

Other elements in 8gbt:

The structure of Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase also contains other interesting chemical elements:

Copper (Cu) 6 atoms
Zinc (Zn) 2 atoms
Sodium (Na) 2 atoms
Magnesium (Mg) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase (pdb code 8gbt). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase, PDB code: 8gbt:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 8gbt

Go back to Iron Binding Sites List in 8gbt
Iron binding site 1 out of 4 in the Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:34.1
occ:1.00
 FE A:HEA601 0.0 34.1 1.0
NA A:HEA601 2.1 33.4 1.0
ND A:HEA601 2.1 32.6 1.0
NC A:HEA601 2.1 34.7 1.0
NE2 A:HIS61 2.1 36.9 1.0
NE2 A:HIS378 2.1 35.0 1.0
NB A:HEA601 2.1 36.6 1.0
CE1 A:HIS378 2.9 37.5 1.0
CD2 A:HIS61 2.9 36.2 1.0
C4A A:HEA601 3.0 34.9 1.0
C4C A:HEA601 3.1 34.5 1.0
C4D A:HEA601 3.1 32.5 1.0
C1D A:HEA601 3.1 32.3 1.0
C1A A:HEA601 3.1 34.0 1.0
C1B A:HEA601 3.1 36.7 1.0
C1C A:HEA601 3.1 36.6 1.0
C4B A:HEA601 3.1 37.1 1.0
CE1 A:HIS61 3.2 35.0 1.0
CD2 A:HIS378 3.2 35.5 1.0
CHD A:HEA601 3.4 33.9 1.0
CHB A:HEA601 3.4 35.2 1.0
CHA A:HEA601 3.4 33.6 1.0
CHC A:HEA601 3.5 36.8 1.0
ND1 A:HIS378 4.1 37.5 1.0
CG A:HIS61 4.1 35.1 1.0
ND1 A:HIS61 4.2 33.5 1.0
CG A:HIS378 4.3 36.7 1.0
C3A A:HEA601 4.3 35.7 1.0
C3D A:HEA601 4.4 32.4 1.0
C3C A:HEA601 4.4 34.8 1.0
C2D A:HEA601 4.4 31.5 1.0
C2A A:HEA601 4.4 34.8 1.0
C2B A:HEA601 4.4 39.5 1.0
C2C A:HEA601 4.4 37.1 1.0
C3B A:HEA601 4.5 37.8 1.0
CE1 A:PHE377 5.0 37.0 1.0

Iron binding site 2 out of 4 in 8gbt

Go back to Iron Binding Sites List in 8gbt
Iron binding site 2 out of 4 in the Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe602

b:32.6
occ:1.00
 FE A:HEA602 0.0 32.6 1.0
NA A:HEA602 2.1 32.4 1.0
NB A:HEA602 2.1 31.2 1.0
ND A:HEA602 2.1 31.2 1.0
NE2 A:HIS376 2.1 35.7 1.0
NC A:HEA602 2.1 31.9 1.0
O A:CMO608 2.6 36.1 1.0
C A:CMO608 2.7 33.3 1.0
CE1 A:HIS376 2.9 34.7 1.0
C4A A:HEA602 3.1 34.5 1.0
C4B A:HEA602 3.1 32.4 1.0
C4D A:HEA602 3.1 32.4 1.0
C1B A:HEA602 3.1 32.6 1.0
C1A A:HEA602 3.1 33.4 1.0
C1D A:HEA602 3.1 30.5 1.0
C1C A:HEA602 3.1 31.8 1.0
C4C A:HEA602 3.1 32.3 1.0
CD2 A:HIS376 3.2 35.9 1.0
CHB A:HEA602 3.4 35.1 1.0
CHC A:HEA602 3.4 32.8 1.0
CHA A:HEA602 3.4 33.0 1.0
CHD A:HEA602 3.5 31.0 1.0
ND1 A:HIS376 4.1 34.2 1.0
CG A:HIS376 4.2 36.1 1.0
C3A A:HEA602 4.4 34.3 1.0
C3B A:HEA602 4.4 34.4 1.0
C3D A:HEA602 4.4 30.2 1.0
C2B A:HEA602 4.4 33.1 1.0
C2D A:HEA602 4.4 31.4 1.0
C2A A:HEA602 4.4 34.6 1.0
C3C A:HEA602 4.4 34.1 1.0
C2C A:HEA602 4.5 32.2 1.0

Iron binding site 3 out of 4 in 8gbt

Go back to Iron Binding Sites List in 8gbt
Iron binding site 3 out of 4 in the Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Fe601

b:46.0
occ:1.00
 FE N:HEA601 0.0 46.0 1.0
NA N:HEA601 2.1 45.2 1.0
NC N:HEA601 2.1 44.2 1.0
NB N:HEA601 2.1 46.6 1.0
NE2 N:HIS61 2.1 50.3 1.0
ND N:HEA601 2.1 50.5 1.0
NE2 N:HIS378 2.1 52.1 1.0
CD2 N:HIS61 2.9 48.0 1.0
CE1 N:HIS378 3.0 52.8 1.0
C4A N:HEA601 3.1 45.3 1.0
C1C N:HEA601 3.1 47.9 1.0
C1A N:HEA601 3.1 48.1 1.0
C4B N:HEA601 3.1 47.3 1.0
C4C N:HEA601 3.1 48.4 1.0
C4D N:HEA601 3.1 48.4 1.0
C1B N:HEA601 3.1 44.2 1.0
C1D N:HEA601 3.1 49.9 1.0
CD2 N:HIS378 3.2 53.1 1.0
CE1 N:HIS61 3.2 52.2 1.0
CHC N:HEA601 3.4 49.3 1.0
CHA N:HEA601 3.5 49.9 1.0
CHB N:HEA601 3.5 43.9 1.0
CHD N:HEA601 3.5 49.2 1.0
CG N:HIS61 4.1 48.5 1.0
ND1 N:HIS378 4.2 50.2 1.0
ND1 N:HIS61 4.2 47.4 1.0
CG N:HIS378 4.3 52.7 1.0
C3A N:HEA601 4.3 47.8 1.0
C3C N:HEA601 4.4 54.2 1.0
C2C N:HEA601 4.4 52.8 1.0
C2A N:HEA601 4.4 47.5 1.0
C3B N:HEA601 4.4 45.5 1.0
C3D N:HEA601 4.4 47.4 1.0
C2B N:HEA601 4.4 47.3 1.0
C2D N:HEA601 4.5 46.2 1.0
CE1 N:PHE377 5.0 62.4 1.0

Iron binding site 4 out of 4 in 8gbt

Go back to Iron Binding Sites List in 8gbt
Iron binding site 4 out of 4 in the Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Fe602

b:38.2
occ:1.00
 FE N:HEA602 0.0 38.2 1.0
NC N:HEA602 2.1 36.0 1.0
NB N:HEA602 2.1 34.8 1.0
NA N:HEA602 2.1 36.1 1.0
NE2 N:HIS376 2.1 53.7 1.0
ND N:HEA602 2.1 36.9 1.0
O N:CMO610 2.1 56.4 1.0
C N:CMO610 2.7 56.3 1.0
CD2 N:HIS376 3.0 56.9 1.0
C1B N:HEA602 3.1 34.9 1.0
C4C N:HEA602 3.1 36.8 1.0
C4A N:HEA602 3.1 37.6 1.0
C4B N:HEA602 3.1 34.0 1.0
C1C N:HEA602 3.1 36.2 1.0
C1A N:HEA602 3.1 36.6 1.0
C4D N:HEA602 3.1 37.6 1.0
C1D N:HEA602 3.1 37.4 1.0
CE1 N:HIS376 3.1 55.5 1.0
CHB N:HEA602 3.4 35.2 1.0
CHC N:HEA602 3.5 34.0 1.0
CHA N:HEA602 3.5 37.0 1.0
CHD N:HEA602 3.5 37.7 1.0
CG N:HIS376 4.2 54.7 1.0
ND1 N:HIS376 4.2 55.9 1.0
C3C N:HEA602 4.4 36.1 1.0
C2B N:HEA602 4.4 36.4 1.0
C3A N:HEA602 4.4 39.8 1.0
C3B N:HEA602 4.4 35.8 1.0
C2C N:HEA602 4.4 36.6 1.0
C2A N:HEA602 4.4 40.2 1.0
C3D N:HEA602 4.5 39.1 1.0
C2D N:HEA602 4.5 38.5 1.0

Reference:

I.Ishigami, S.-R.Yeh, D.L.Rousseau. Detection of A Geminate Photoproduct of Bovine Cytochrome C Oxidase By Time-Resolved Serial Femtosecond Crystallography To Be Published.
Page generated: Sat Aug 10 04:43:06 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy