Iron in PDB 8jja: SP1746 in Complex with Acetate Ions
Enzymatic activity of SP1746 in Complex with Acetate Ions
All present enzymatic activity of SP1746 in Complex with Acetate Ions:
3.6.1.41;
Protein crystallography data
The structure of SP1746 in Complex with Acetate Ions, PDB code: 8jja
was solved by
Y.Jin,
L.Niu,
J.Ke,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.64 /
1.60
|
Space group
|
P 32 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
69.097,
69.097,
88.608,
90,
90,
120
|
R / Rfree (%)
|
18.8 /
20
|
Iron Binding Sites:
The binding sites of Iron atom in the SP1746 in Complex with Acetate Ions
(pdb code 8jja). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
SP1746 in Complex with Acetate Ions, PDB code: 8jja:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 8jja
Go back to
Iron Binding Sites List in 8jja
Iron binding site 1 out
of 2 in the SP1746 in Complex with Acetate Ions
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of SP1746 in Complex with Acetate Ions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe301
b:19.6
occ:1.00
|
O
|
A:HOH402
|
2.0
|
20.8
|
1.0
|
OD1
|
A:ASP135
|
2.0
|
20.7
|
1.0
|
O
|
A:ACT303
|
2.1
|
24.8
|
1.0
|
OD2
|
A:ASP59
|
2.1
|
20.5
|
1.0
|
NE2
|
A:HIS29
|
2.1
|
20.2
|
1.0
|
NE2
|
A:HIS58
|
2.2
|
19.5
|
1.0
|
CG
|
A:ASP135
|
3.0
|
21.9
|
1.0
|
CG
|
A:ASP59
|
3.0
|
19.9
|
1.0
|
C
|
A:ACT303
|
3.0
|
26.1
|
1.0
|
CE1
|
A:HIS29
|
3.1
|
20.0
|
1.0
|
CD2
|
A:HIS58
|
3.1
|
19.2
|
1.0
|
CD2
|
A:HIS29
|
3.1
|
20.7
|
1.0
|
CE1
|
A:HIS58
|
3.2
|
19.5
|
1.0
|
OXT
|
A:ACT303
|
3.3
|
25.7
|
1.0
|
OD2
|
A:ASP135
|
3.4
|
25.5
|
1.0
|
OD1
|
A:ASP59
|
3.5
|
19.7
|
1.0
|
FE
|
A:FE302
|
3.6
|
18.9
|
1.0
|
NH1
|
A:ARG26
|
4.0
|
34.7
|
1.0
|
ND1
|
A:HIS29
|
4.2
|
20.4
|
1.0
|
CB
|
A:ASP59
|
4.2
|
19.5
|
1.0
|
CG
|
A:HIS29
|
4.2
|
20.6
|
1.0
|
CB
|
A:ASP135
|
4.3
|
20.3
|
1.0
|
CG
|
A:HIS58
|
4.3
|
19.2
|
1.0
|
ND1
|
A:HIS58
|
4.3
|
18.9
|
1.0
|
O
|
A:HOH548
|
4.4
|
41.6
|
1.0
|
CH3
|
A:ACT303
|
4.4
|
28.7
|
1.0
|
OXT
|
A:ACT304
|
4.5
|
34.9
|
1.0
|
NE2
|
A:HIS117
|
4.7
|
17.9
|
1.0
|
C
|
A:ACT304
|
4.7
|
30.6
|
1.0
|
CG2
|
A:VAL33
|
4.8
|
19.8
|
1.0
|
CD2
|
A:HIS117
|
4.8
|
17.8
|
1.0
|
O
|
A:ACT304
|
4.8
|
26.3
|
1.0
|
CA
|
A:ASP135
|
4.9
|
19.3
|
1.0
|
O
|
A:ASP135
|
5.0
|
19.7
|
1.0
|
|
Iron binding site 2 out
of 2 in 8jja
Go back to
Iron Binding Sites List in 8jja
Iron binding site 2 out
of 2 in the SP1746 in Complex with Acetate Ions
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of SP1746 in Complex with Acetate Ions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe302
b:18.9
occ:1.00
|
O
|
A:HOH402
|
2.0
|
20.8
|
1.0
|
OD1
|
A:ASP59
|
2.0
|
19.7
|
1.0
|
OXT
|
A:ACT303
|
2.1
|
25.7
|
1.0
|
NE2
|
A:HIS91
|
2.1
|
19.2
|
1.0
|
NE2
|
A:HIS117
|
2.2
|
17.9
|
1.0
|
O
|
A:ACT304
|
2.3
|
26.3
|
1.0
|
CG
|
A:ASP59
|
3.0
|
19.9
|
1.0
|
C
|
A:ACT304
|
3.1
|
30.6
|
1.0
|
CD2
|
A:HIS91
|
3.1
|
19.6
|
1.0
|
CD2
|
A:HIS117
|
3.1
|
17.8
|
1.0
|
CE1
|
A:HIS91
|
3.1
|
20.6
|
1.0
|
C
|
A:ACT303
|
3.2
|
26.1
|
1.0
|
CE1
|
A:HIS117
|
3.2
|
17.8
|
1.0
|
OD2
|
A:ASP59
|
3.3
|
20.5
|
1.0
|
FE
|
A:FE301
|
3.6
|
19.6
|
1.0
|
OXT
|
A:ACT304
|
3.6
|
34.9
|
1.0
|
O
|
A:ACT303
|
3.6
|
24.8
|
1.0
|
OG1
|
A:THR118
|
3.9
|
18.1
|
1.0
|
CD2
|
A:HIS58
|
4.0
|
19.2
|
1.0
|
CH3
|
A:ACT304
|
4.2
|
29.9
|
1.0
|
ND1
|
A:HIS91
|
4.2
|
19.8
|
1.0
|
CG
|
A:HIS91
|
4.3
|
19.1
|
1.0
|
NE2
|
A:HIS58
|
4.3
|
19.5
|
1.0
|
ND1
|
A:HIS117
|
4.3
|
17.7
|
1.0
|
CG
|
A:HIS117
|
4.3
|
17.2
|
1.0
|
O
|
A:HOH434
|
4.3
|
34.1
|
1.0
|
OD2
|
A:ASP135
|
4.4
|
25.5
|
1.0
|
CB
|
A:ASP59
|
4.4
|
19.5
|
1.0
|
CH3
|
A:ACT303
|
4.4
|
28.7
|
1.0
|
OD1
|
A:ASP135
|
4.8
|
20.7
|
1.0
|
CA
|
A:ASP59
|
4.8
|
19.5
|
1.0
|
O
|
A:HIS58
|
4.9
|
19.6
|
1.0
|
CG
|
A:ASP135
|
4.9
|
21.9
|
1.0
|
CD
|
A:LYS62
|
4.9
|
33.1
|
1.0
|
|
Reference:
Y.Jin,
J.Ke,
L.Niu.
Structural and Biochemical Characterization of A Novel Hydrolase From Streptococcus Pneumoniae To Be Published.
Page generated: Sat Aug 10 06:59:37 2024
|