Iron in PDB 8jjk: SP1746 in Complex with Adp

Enzymatic activity of SP1746 in Complex with Adp

All present enzymatic activity of SP1746 in Complex with Adp:
3.6.1.41;

Protein crystallography data

The structure of SP1746 in Complex with Adp, PDB code: 8jjk was solved by Y.Jin, L.Niu, J.Ke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.01 / 1.70
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 69.744, 69.744, 88.394, 90, 90, 120
R / Rfree (%) 19 / 23.3

Other elements in 8jjk:

The structure of SP1746 in Complex with Adp also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the SP1746 in Complex with Adp (pdb code 8jjk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the SP1746 in Complex with Adp, PDB code: 8jjk:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8jjk

Go back to Iron Binding Sites List in 8jjk
Iron binding site 1 out of 2 in the SP1746 in Complex with Adp


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of SP1746 in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe305

b:21.0
occ:1.00
O A:HOH410 2.0 19.2 1.0
NE2 A:HIS29 2.1 20.9 1.0
OD1 A:ASP135 2.1 21.0 1.0
NE2 A:HIS58 2.2 17.3 1.0
O3B A:ADP301 2.2 23.9 1.0
OD2 A:ASP59 2.3 18.3 1.0
CG A:ASP135 3.1 21.0 1.0
CD2 A:HIS58 3.1 18.2 1.0
CG A:ASP59 3.1 18.5 1.0
CD2 A:HIS29 3.1 20.9 1.0
CE1 A:HIS29 3.1 20.6 1.0
CE1 A:HIS58 3.3 18.2 1.0
PB A:ADP301 3.3 26.7 1.0
OD2 A:ASP135 3.4 22.1 1.0
OD1 A:ASP59 3.4 19.1 1.0
O2B A:ADP301 3.5 24.1 1.0
FE A:FE306 3.6 17.2 1.0
O3A A:ADP301 3.9 24.9 1.0
NH2 A:ARG141 3.9 33.7 1.0
NH1 A:ARG26 3.9 30.8 1.0
ND1 A:HIS29 4.2 20.9 1.0
CG A:HIS29 4.2 20.6 1.0
CG A:HIS58 4.3 17.7 1.0
CB A:ASP59 4.3 18.4 1.0
ND1 A:HIS58 4.3 17.5 1.0
CB A:ASP135 4.3 19.1 1.0
O1B A:ADP301 4.6 26.2 1.0
NE2 A:HIS117 4.7 16.8 1.0
O2A A:ADP301 4.7 21.9 1.0
CD2 A:HIS117 4.8 16.6 1.0
CZ A:ARG141 4.8 35.1 1.0
CG2 A:VAL33 4.8 17.2 1.0
PA A:ADP301 4.9 25.5 1.0
CA A:ASP135 4.9 18.1 1.0
O A:ASP135 4.9 18.1 1.0

Iron binding site 2 out of 2 in 8jjk

Go back to Iron Binding Sites List in 8jjk
Iron binding site 2 out of 2 in the SP1746 in Complex with Adp


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of SP1746 in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe306

b:17.2
occ:1.00
O A:HOH410 2.0 19.2 1.0
O2B A:ADP301 2.1 24.1 1.0
OD1 A:ASP59 2.1 19.1 1.0
O2A A:ADP301 2.1 21.9 1.0
NE2 A:HIS117 2.2 16.8 1.0
NE2 A:HIS91 2.2 18.5 1.0
CD2 A:HIS117 3.1 16.6 1.0
CG A:ASP59 3.1 18.5 1.0
CE1 A:HIS91 3.2 19.3 1.0
CD2 A:HIS91 3.2 18.9 1.0
PB A:ADP301 3.2 26.7 1.0
CE1 A:HIS117 3.2 16.6 1.0
PA A:ADP301 3.3 25.5 1.0
OD2 A:ASP59 3.4 18.3 1.0
O3A A:ADP301 3.5 24.9 1.0
FE A:FE305 3.6 21.0 1.0
OG1 A:THR118 3.8 16.5 1.0
O3B A:ADP301 3.8 23.9 1.0
CD2 A:HIS58 4.1 18.2 1.0
CG A:HIS117 4.3 16.9 1.0
ND1 A:HIS91 4.3 18.8 1.0
OD2 A:ASP135 4.3 22.1 1.0
ND1 A:HIS117 4.3 16.8 1.0
CG A:HIS91 4.3 18.6 1.0
O1A A:ADP301 4.4 25.8 1.0
NZ A:LYS62 4.4 26.5 1.0
O5' A:ADP301 4.4 26.9 1.0
NE2 A:HIS58 4.4 17.3 1.0
CB A:ASP59 4.5 18.4 1.0
O1B A:ADP301 4.5 26.2 1.0
C5' A:ADP301 4.6 27.9 1.0
CD A:LYS62 4.8 26.7 1.0
CA A:ASP59 4.9 18.1 1.0
OD1 A:ASP135 4.9 21.0 1.0
O A:HIS58 4.9 18.9 1.0
CG A:ASP135 4.9 21.0 1.0

Reference:

Y.Jin, J.Ke, L.Niu. Structural and Biochemical Characterization of A Novel Hydrolase From Streptococcus Pneumoniae To Be Published.
Page generated: Sat Aug 10 07:01:03 2024

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