Iron in PDB 8jjk: SP1746 in Complex with Adp
Enzymatic activity of SP1746 in Complex with Adp
All present enzymatic activity of SP1746 in Complex with Adp:
3.6.1.41;
Protein crystallography data
The structure of SP1746 in Complex with Adp, PDB code: 8jjk
was solved by
Y.Jin,
L.Niu,
J.Ke,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.01 /
1.70
|
Space group
|
P 32 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
69.744,
69.744,
88.394,
90,
90,
120
|
R / Rfree (%)
|
19 /
23.3
|
Other elements in 8jjk:
The structure of SP1746 in Complex with Adp also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the SP1746 in Complex with Adp
(pdb code 8jjk). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
SP1746 in Complex with Adp, PDB code: 8jjk:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 8jjk
Go back to
Iron Binding Sites List in 8jjk
Iron binding site 1 out
of 2 in the SP1746 in Complex with Adp
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of SP1746 in Complex with Adp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe305
b:21.0
occ:1.00
|
O
|
A:HOH410
|
2.0
|
19.2
|
1.0
|
NE2
|
A:HIS29
|
2.1
|
20.9
|
1.0
|
OD1
|
A:ASP135
|
2.1
|
21.0
|
1.0
|
NE2
|
A:HIS58
|
2.2
|
17.3
|
1.0
|
O3B
|
A:ADP301
|
2.2
|
23.9
|
1.0
|
OD2
|
A:ASP59
|
2.3
|
18.3
|
1.0
|
CG
|
A:ASP135
|
3.1
|
21.0
|
1.0
|
CD2
|
A:HIS58
|
3.1
|
18.2
|
1.0
|
CG
|
A:ASP59
|
3.1
|
18.5
|
1.0
|
CD2
|
A:HIS29
|
3.1
|
20.9
|
1.0
|
CE1
|
A:HIS29
|
3.1
|
20.6
|
1.0
|
CE1
|
A:HIS58
|
3.3
|
18.2
|
1.0
|
PB
|
A:ADP301
|
3.3
|
26.7
|
1.0
|
OD2
|
A:ASP135
|
3.4
|
22.1
|
1.0
|
OD1
|
A:ASP59
|
3.4
|
19.1
|
1.0
|
O2B
|
A:ADP301
|
3.5
|
24.1
|
1.0
|
FE
|
A:FE306
|
3.6
|
17.2
|
1.0
|
O3A
|
A:ADP301
|
3.9
|
24.9
|
1.0
|
NH2
|
A:ARG141
|
3.9
|
33.7
|
1.0
|
NH1
|
A:ARG26
|
3.9
|
30.8
|
1.0
|
ND1
|
A:HIS29
|
4.2
|
20.9
|
1.0
|
CG
|
A:HIS29
|
4.2
|
20.6
|
1.0
|
CG
|
A:HIS58
|
4.3
|
17.7
|
1.0
|
CB
|
A:ASP59
|
4.3
|
18.4
|
1.0
|
ND1
|
A:HIS58
|
4.3
|
17.5
|
1.0
|
CB
|
A:ASP135
|
4.3
|
19.1
|
1.0
|
O1B
|
A:ADP301
|
4.6
|
26.2
|
1.0
|
NE2
|
A:HIS117
|
4.7
|
16.8
|
1.0
|
O2A
|
A:ADP301
|
4.7
|
21.9
|
1.0
|
CD2
|
A:HIS117
|
4.8
|
16.6
|
1.0
|
CZ
|
A:ARG141
|
4.8
|
35.1
|
1.0
|
CG2
|
A:VAL33
|
4.8
|
17.2
|
1.0
|
PA
|
A:ADP301
|
4.9
|
25.5
|
1.0
|
CA
|
A:ASP135
|
4.9
|
18.1
|
1.0
|
O
|
A:ASP135
|
4.9
|
18.1
|
1.0
|
|
Iron binding site 2 out
of 2 in 8jjk
Go back to
Iron Binding Sites List in 8jjk
Iron binding site 2 out
of 2 in the SP1746 in Complex with Adp
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of SP1746 in Complex with Adp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe306
b:17.2
occ:1.00
|
O
|
A:HOH410
|
2.0
|
19.2
|
1.0
|
O2B
|
A:ADP301
|
2.1
|
24.1
|
1.0
|
OD1
|
A:ASP59
|
2.1
|
19.1
|
1.0
|
O2A
|
A:ADP301
|
2.1
|
21.9
|
1.0
|
NE2
|
A:HIS117
|
2.2
|
16.8
|
1.0
|
NE2
|
A:HIS91
|
2.2
|
18.5
|
1.0
|
CD2
|
A:HIS117
|
3.1
|
16.6
|
1.0
|
CG
|
A:ASP59
|
3.1
|
18.5
|
1.0
|
CE1
|
A:HIS91
|
3.2
|
19.3
|
1.0
|
CD2
|
A:HIS91
|
3.2
|
18.9
|
1.0
|
PB
|
A:ADP301
|
3.2
|
26.7
|
1.0
|
CE1
|
A:HIS117
|
3.2
|
16.6
|
1.0
|
PA
|
A:ADP301
|
3.3
|
25.5
|
1.0
|
OD2
|
A:ASP59
|
3.4
|
18.3
|
1.0
|
O3A
|
A:ADP301
|
3.5
|
24.9
|
1.0
|
FE
|
A:FE305
|
3.6
|
21.0
|
1.0
|
OG1
|
A:THR118
|
3.8
|
16.5
|
1.0
|
O3B
|
A:ADP301
|
3.8
|
23.9
|
1.0
|
CD2
|
A:HIS58
|
4.1
|
18.2
|
1.0
|
CG
|
A:HIS117
|
4.3
|
16.9
|
1.0
|
ND1
|
A:HIS91
|
4.3
|
18.8
|
1.0
|
OD2
|
A:ASP135
|
4.3
|
22.1
|
1.0
|
ND1
|
A:HIS117
|
4.3
|
16.8
|
1.0
|
CG
|
A:HIS91
|
4.3
|
18.6
|
1.0
|
O1A
|
A:ADP301
|
4.4
|
25.8
|
1.0
|
NZ
|
A:LYS62
|
4.4
|
26.5
|
1.0
|
O5'
|
A:ADP301
|
4.4
|
26.9
|
1.0
|
NE2
|
A:HIS58
|
4.4
|
17.3
|
1.0
|
CB
|
A:ASP59
|
4.5
|
18.4
|
1.0
|
O1B
|
A:ADP301
|
4.5
|
26.2
|
1.0
|
C5'
|
A:ADP301
|
4.6
|
27.9
|
1.0
|
CD
|
A:LYS62
|
4.8
|
26.7
|
1.0
|
CA
|
A:ASP59
|
4.9
|
18.1
|
1.0
|
OD1
|
A:ASP135
|
4.9
|
21.0
|
1.0
|
O
|
A:HIS58
|
4.9
|
18.9
|
1.0
|
CG
|
A:ASP135
|
4.9
|
21.0
|
1.0
|
|
Reference:
Y.Jin,
J.Ke,
L.Niu.
Structural and Biochemical Characterization of A Novel Hydrolase From Streptococcus Pneumoniae To Be Published.
Page generated: Sat Aug 10 07:01:03 2024
|