Iron in PDB 8k9e: Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 21;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom (pdb code 8k9e). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 21 binding sites of Iron where determined in the Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom, PDB code: 8k9e:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 21 in 8k9e

Go back to Iron Binding Sites List in 8k9e
Iron binding site 1 out of 21 in the Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:11.6
occ:1.00
FE A:HEC301 0.0 11.6 1.0
NC A:HEC301 1.9 11.6 1.0
NA A:HEC301 1.9 11.6 1.0
NB A:HEC301 1.9 11.6 1.0
ND A:HEC301 1.9 11.6 1.0
SD A:MET161 2.0 25.2 1.0
NE2 A:HIS218 2.0 8.9 1.0
CE1 A:HIS218 2.8 8.9 1.0
C4D A:HEC301 3.0 11.6 1.0
C1A A:HEC301 3.0 11.6 1.0
C4B A:HEC301 3.0 11.6 1.0
C1C A:HEC301 3.0 11.6 1.0
C1D A:HEC301 3.0 11.6 1.0
C4C A:HEC301 3.0 11.6 1.0
C1B A:HEC301 3.0 11.6 1.0
C4A A:HEC301 3.0 11.6 1.0
CG A:MET161 3.1 25.2 1.0
CD2 A:HIS218 3.1 8.9 1.0
CHA A:HEC301 3.4 11.6 1.0
CHC A:HEC301 3.4 11.6 1.0
CHD A:HEC301 3.4 11.6 1.0
CHB A:HEC301 3.4 11.6 1.0
CE A:MET161 3.5 25.2 1.0
ND1 A:HIS218 4.0 8.9 1.0
CB A:MET161 4.1 25.2 1.0
C2C A:HEC301 4.2 11.6 1.0
CG A:HIS218 4.2 8.9 1.0
C3B A:HEC301 4.2 11.6 1.0
C2A A:HEC301 4.2 11.6 1.0
C3D A:HEC301 4.2 11.6 1.0
C3C A:HEC301 4.2 11.6 1.0
C2B A:HEC301 4.2 11.6 1.0
C3A A:HEC301 4.2 11.6 1.0
C2D A:HEC301 4.2 11.6 1.0

Iron binding site 2 out of 21 in 8k9e

Go back to Iron Binding Sites List in 8k9e
Iron binding site 2 out of 21 in the Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe302

b:11.0
occ:1.00
FE A:HEC302 0.0 11.0 1.0
NE2 A:HIS168 1.8 7.7 1.0
NA A:HEC302 1.9 11.0 1.0
ND A:HEC302 1.9 11.0 1.0
NC A:HEC302 1.9 11.0 1.0
NB A:HEC302 1.9 11.0 1.0
NE2 A:HIS133 2.0 9.9 1.0
CD2 A:HIS168 2.8 7.7 1.0
CE1 A:HIS133 2.8 9.9 1.0
CE1 A:HIS168 3.0 7.7 1.0
C1D A:HEC302 3.0 11.0 1.0
C4D A:HEC302 3.0 11.0 1.0
C4C A:HEC302 3.0 11.0 1.0
C1B A:HEC302 3.0 11.0 1.0
C1A A:HEC302 3.0 11.0 1.0
C4A A:HEC302 3.0 11.0 1.0
C4B A:HEC302 3.0 11.0 1.0
C1C A:HEC302 3.0 11.0 1.0
CD2 A:HIS133 3.0 9.9 1.0
CHD A:HEC302 3.4 11.0 1.0
CHA A:HEC302 3.4 11.0 1.0
CHB A:HEC302 3.4 11.0 1.0
CHC A:HEC302 3.4 11.0 1.0
ND1 A:HIS133 3.8 9.9 1.0
CG A:HIS168 3.9 7.7 1.0
CG A:HIS133 4.0 9.9 1.0
ND1 A:HIS168 4.0 7.7 1.0
C3C A:HEC302 4.2 11.0 1.0
C2B A:HEC302 4.2 11.0 1.0
C2A A:HEC302 4.2 11.0 1.0
C3A A:HEC302 4.2 11.0 1.0
C2D A:HEC302 4.2 11.0 1.0
C2C A:HEC302 4.2 11.0 1.0
C3D A:HEC302 4.2 11.0 1.0
C3B A:HEC302 4.2 11.0 1.0
CE1 A:PHE128 4.9 11.2 1.0

Iron binding site 3 out of 21 in 8k9e

Go back to Iron Binding Sites List in 8k9e
Iron binding site 3 out of 21 in the Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe303

b:13.7
occ:1.00
FE A:HEC303 0.0 13.7 1.0
NE2 A:HIS144 1.9 15.2 1.0
NA A:HEC303 1.9 13.7 1.0
NC A:HEC303 1.9 13.7 1.0
ND A:HEC303 1.9 13.7 1.0
NB A:HEC303 1.9 13.7 1.0
NE2 A:HIS130 2.0 12.5 1.0
CD2 A:HIS130 2.6 12.5 1.0
CD2 A:HIS144 2.9 15.2 1.0
CE1 A:HIS144 2.9 15.2 1.0
C1D A:HEC303 2.9 13.7 1.0
C4C A:HEC303 3.0 13.7 1.0
C1B A:HEC303 3.0 13.7 1.0
C1C A:HEC303 3.0 13.7 1.0
C4D A:HEC303 3.0 13.7 1.0
C1A A:HEC303 3.0 13.7 1.0
C4A A:HEC303 3.0 13.7 1.0
C4B A:HEC303 3.0 13.7 1.0
CE1 A:HIS130 3.2 12.5 1.0
CHD A:HEC303 3.3 13.7 1.0
CHA A:HEC303 3.4 13.7 1.0
CHB A:HEC303 3.4 13.7 1.0
CHC A:HEC303 3.4 13.7 1.0
CG A:HIS130 3.9 12.5 1.0
ND1 A:HIS144 4.0 15.2 1.0
CG A:HIS144 4.0 15.2 1.0
ND1 A:HIS130 4.1 12.5 1.0
C3C A:HEC303 4.2 13.7 1.0
C2C A:HEC303 4.2 13.7 1.0
C2B A:HEC303 4.2 13.7 1.0
C2D A:HEC303 4.2 13.7 1.0
C2A A:HEC303 4.2 13.7 1.0
C3A A:HEC303 4.2 13.7 1.0
C3D A:HEC303 4.2 13.7 1.0
C3B A:HEC303 4.2 13.7 1.0
CE2 A:PHE128 4.7 11.2 1.0

Iron binding site 4 out of 21 in 8k9e

Go back to Iron Binding Sites List in 8k9e
Iron binding site 4 out of 21 in the Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe304

b:18.1
occ:1.00
FE A:HEC304 0.0 18.1 1.0
NC A:HEC304 1.9 18.1 1.0
ND A:HEC304 1.9 18.1 1.0
NB A:HEC304 1.9 18.1 1.0
NA A:HEC304 1.9 18.1 1.0
NE2 A:HIS70 2.0 17.0 1.0
NE2 A:HIS55 2.0 21.2 1.0
CE1 A:HIS70 2.8 17.0 1.0
CE1 A:HIS55 2.8 21.2 1.0
C1D A:HEC304 3.0 18.1 1.0
C4C A:HEC304 3.0 18.1 1.0
C4D A:HEC304 3.0 18.1 1.0
C1C A:HEC304 3.0 18.1 1.0
C4B A:HEC304 3.0 18.1 1.0
C1B A:HEC304 3.0 18.1 1.0
C1A A:HEC304 3.0 18.1 1.0
C4A A:HEC304 3.0 18.1 1.0
CD2 A:HIS70 3.1 17.0 1.0
CD2 A:HIS55 3.2 21.2 1.0
CHD A:HEC304 3.3 18.1 1.0
CHA A:HEC304 3.4 18.1 1.0
CHB A:HEC304 3.4 18.1 1.0
CHC A:HEC304 3.4 18.1 1.0
ND1 A:HIS70 3.9 17.0 1.0
ND1 A:HIS55 4.0 21.2 1.0
CG A:HIS70 4.1 17.0 1.0
C2C A:HEC304 4.2 18.1 1.0
C3C A:HEC304 4.2 18.1 1.0
CG A:HIS55 4.2 21.2 1.0
C3B A:HEC304 4.2 18.1 1.0
C2B A:HEC304 4.2 18.1 1.0
C3A A:HEC304 4.2 18.1 1.0
C2D A:HEC304 4.2 18.1 1.0
C3D A:HEC304 4.2 18.1 1.0
C2A A:HEC304 4.2 18.1 1.0

Iron binding site 5 out of 21 in 8k9e

Go back to Iron Binding Sites List in 8k9e
Iron binding site 5 out of 21 in the Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe305

b:34.1
occ:1.00
FE A:HEC305 0.0 34.1 1.0
NC A:HEC305 1.9 34.1 1.0
NA A:HEC305 1.9 34.1 1.0
NB A:HEC305 1.9 34.1 1.0
ND A:HEC305 1.9 34.1 1.0
NE2 A:HIS91 2.0 36.0 1.0
NE2 A:HIS58 2.0 27.1 1.0
CE1 A:HIS91 2.6 36.0 1.0
CE1 A:HIS58 3.0 27.1 1.0
C4D A:HEC305 3.0 34.1 1.0
C1A A:HEC305 3.0 34.1 1.0
C1C A:HEC305 3.0 34.1 1.0
C1D A:HEC305 3.0 34.1 1.0
C4B A:HEC305 3.0 34.1 1.0
C4C A:HEC305 3.0 34.1 1.0
C1B A:HEC305 3.0 34.1 1.0
C4A A:HEC305 3.0 34.1 1.0
CD2 A:HIS58 3.0 27.1 1.0
CD2 A:HIS91 3.2 36.0 1.0
CHA A:HEC305 3.4 34.1 1.0
CHD A:HEC305 3.4 34.1 1.0
CHC A:HEC305 3.4 34.1 1.0
CHB A:HEC305 3.4 34.1 1.0
ND1 A:HIS91 3.8 36.0 1.0
ND1 A:HIS58 4.1 27.1 1.0
CG A:HIS91 4.1 36.0 1.0
CG A:HIS58 4.1 27.1 1.0
C2C A:HEC305 4.2 34.1 1.0
C2A A:HEC305 4.2 34.1 1.0
C3D A:HEC305 4.2 34.1 1.0
C3B A:HEC305 4.2 34.1 1.0
C3A A:HEC305 4.2 34.1 1.0
C3C A:HEC305 4.2 34.1 1.0
C2D A:HEC305 4.2 34.1 1.0
C2B A:HEC305 4.2 34.1 1.0

Iron binding site 6 out of 21 in 8k9e

Go back to Iron Binding Sites List in 8k9e
Iron binding site 6 out of 21 in the Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1101

b:13.5
occ:1.00
FE1 B:SF41101 0.0 13.5 1.0
SG B:CYS797 1.9 14.1 1.0
S3 B:SF41101 2.3 13.5 1.0
S4 B:SF41101 2.3 13.5 1.0
S2 B:SF41101 2.3 13.5 1.0
FE2 B:SF41101 2.7 13.5 1.0
FE4 B:SF41101 2.7 13.5 1.0
FE3 B:SF41101 2.7 13.5 1.0
N B:CYS797 3.4 14.1 1.0
CB B:CYS797 3.4 14.1 1.0
N B:ASN798 3.6 11.5 1.0
CA B:CYS797 3.8 14.1 1.0
S1 B:SF41101 3.9 13.5 1.0
C B:CYS797 4.1 14.1 1.0
N B:ALA799 4.2 10.0 1.0
C B:GLY796 4.4 14.9 1.0
SG B:CYS794 4.4 13.1 1.0
SG B:CYS972 4.4 12.2 1.0
N B:GLY796 4.5 14.9 1.0
SG B:CYS800 4.6 8.6 1.0
CA B:ASN798 4.6 11.5 1.0
CD B:PRO973 4.6 14.1 1.0
CA B:GLY796 4.7 14.9 1.0
CG1 B:ILE795 4.7 15.0 1.0
CB B:ALA799 4.9 10.0 1.0
C B:ASN798 4.9 11.5 1.0
N B:CYS800 4.9 8.6 1.0

Iron binding site 7 out of 21 in 8k9e

Go back to Iron Binding Sites List in 8k9e
Iron binding site 7 out of 21 in the Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1101

b:13.5
occ:1.00
FE2 B:SF41101 0.0 13.5 1.0
SG B:CYS972 2.1 12.2 1.0
S4 B:SF41101 2.3 13.5 1.0
S3 B:SF41101 2.3 13.5 1.0
S1 B:SF41101 2.3 13.5 1.0
FE1 B:SF41101 2.7 13.5 1.0
FE4 B:SF41101 2.7 13.5 1.0
FE3 B:SF41101 2.7 13.5 1.0
CB B:CYS972 3.2 12.2 1.0
CA B:CYS972 3.9 12.2 1.0
S2 B:SF41101 3.9 13.5 1.0
OG1 B:THR974 4.0 12.8 1.0
SG B:CYS797 4.2 14.1 1.0
SG B:CYS794 4.4 13.1 1.0
CD B:PRO973 4.6 14.1 1.0
CB B:ALA976 4.7 9.5 1.0
SG B:CYS800 4.7 8.6 1.0
C B:CYS972 4.8 12.2 1.0
N B:CYS972 5.0 12.2 1.0
N B:PRO973 5.0 14.1 1.0

Iron binding site 8 out of 21 in 8k9e

Go back to Iron Binding Sites List in 8k9e
Iron binding site 8 out of 21 in the Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1101

b:13.5
occ:1.00
FE3 B:SF41101 0.0 13.5 1.0
SG B:CYS800 2.2 8.6 1.0
S4 B:SF41101 2.3 13.5 1.0
S2 B:SF41101 2.3 13.5 1.0
S1 B:SF41101 2.3 13.5 1.0
FE4 B:SF41101 2.7 13.5 1.0
FE1 B:SF41101 2.7 13.5 1.0
FE2 B:SF41101 2.7 13.5 1.0
CB B:CYS800 3.3 8.6 1.0
S3 B:SF41101 3.9 13.5 1.0
N B:CYS800 4.0 8.6 1.0
CA B:CYS800 4.3 8.6 1.0
CD1 B:ILE829 4.4 8.8 1.0
SG B:CYS797 4.4 14.1 1.0
SG B:CYS794 4.5 13.1 1.0
N B:ASN798 4.6 11.5 1.0
SG B:CYS972 4.6 12.2 1.0
N B:ALA799 4.7 10.0 1.0
CG1 B:ILE829 4.9 8.8 1.0
CA B:ASN798 4.9 11.5 1.0

Iron binding site 9 out of 21 in 8k9e

Go back to Iron Binding Sites List in 8k9e
Iron binding site 9 out of 21 in the Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1101

b:13.5
occ:1.00
FE4 B:SF41101 0.0 13.5 1.0
SG B:CYS794 1.9 13.1 1.0
S1 B:SF41101 2.3 13.5 1.0
S3 B:SF41101 2.3 13.5 1.0
S2 B:SF41101 2.3 13.5 1.0
FE2 B:SF41101 2.7 13.5 1.0
FE1 B:SF41101 2.7 13.5 1.0
FE3 B:SF41101 2.7 13.5 1.0
CB B:CYS794 3.3 13.1 1.0
CA B:CYS794 3.8 13.1 1.0
S4 B:SF41101 3.9 13.5 1.0
N B:GLY796 3.9 14.9 1.0
N B:ILE795 4.1 15.0 1.0
CG B:PRO847 4.2 8.1 1.0
CA B:GLY796 4.3 14.9 1.0
C B:CYS794 4.4 13.1 1.0
SG B:CYS797 4.5 14.1 1.0
N B:CYS797 4.6 14.1 1.0
SG B:CYS972 4.6 12.2 1.0
SG B:CYS800 4.8 8.6 1.0
CG1 B:ILE829 4.9 8.8 1.0
C B:GLY796 4.9 14.9 1.0
C B:ILE795 5.0 15.0 1.0

Iron binding site 10 out of 21 in 8k9e

Go back to Iron Binding Sites List in 8k9e
Iron binding site 10 out of 21 in the Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of the Photosynthetic Alternative Complex III From Chloroflexus Aurantiacus at 3.3 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1102

b:11.5
occ:1.00
FE1 B:SF41102 0.0 11.5 1.0
SG B:CYS934 1.9 9.6 1.0
S2 B:SF41102 2.3 11.5 1.0
S4 B:SF41102 2.3 11.5 1.0
S3 B:SF41102 2.3 11.5 1.0
FE4 B:SF41102 2.7 11.5 1.0
FE3 B:SF41102 2.7 11.5 1.0
FE2 B:SF41102 2.7 11.5 1.0
CB B:CYS934 3.5 9.6 1.0
N B:CYS934 3.5 9.6 1.0
S1 B:SF41102 3.9 11.5 1.0
CA B:CYS934 3.9 9.6 1.0
OD1 B:ASN808 4.1 8.4 1.0
C B:TYR933 4.2 9.5 1.0
CB B:THR966 4.4 10.3 1.0
SG B:CYS804 4.5 8.4 1.0
N B:ALA967 4.5 9.5 1.0
SG B:CYS968 4.5 9.4 1.0
CA B:TYR933 4.6 9.5 1.0
SG B:CYS931 4.7 10.7 1.0
N B:TYR933 4.8 9.5 1.0
CG2 B:THR966 4.8 10.3 1.0
CG B:ASN808 4.9 8.4 1.0
CB B:ALA967 5.0 9.5 1.0
N B:CYS968 5.0 9.4 1.0

Reference:

J.Xin, Z.Min, L.Yu, X.Yuan, A.Liu, W.Wu, X.Zhang, H.He, J.Wu, Y.Xin, R.E.Blankenship, C.Tian, X.Xu. Cryo-Em Structure of Hqno-Bound Alternative Complex III From the Anoxygenic Phototrophic Bacterium Chloroflexus Aurantiacus. Plant Cell 2024.
ISSN: ESSN 1532-298X
PubMed: 38299372
DOI: 10.1093/PLCELL/KOAE029
Page generated: Sat Aug 10 07:29:05 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy