Iron in PDB 8kei: Cryo-Em Structure of Nadph Oxidase 2 in Complex with P22PHOX and Eros

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of Nadph Oxidase 2 in Complex with P22PHOX and Eros (pdb code 8kei). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Cryo-Em Structure of Nadph Oxidase 2 in Complex with P22PHOX and Eros, PDB code: 8kei:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8kei

Go back to Iron Binding Sites List in 8kei
Iron binding site 1 out of 2 in the Cryo-Em Structure of Nadph Oxidase 2 in Complex with P22PHOX and Eros


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Nadph Oxidase 2 in Complex with P22PHOX and Eros within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe601

b:48.5
occ:1.00
FE B:HEM601 0.0 48.5 1.0
NC B:HEM601 2.0 48.5 1.0
ND B:HEM601 2.0 48.5 1.0
NB B:HEM601 2.0 48.5 1.0
NA B:HEM601 2.0 48.5 1.0
NE2 B:HIS115 2.2 36.3 1.0
CE1 B:HIS222 3.0 40.5 1.0
NE2 B:HIS222 3.0 40.5 1.0
C1C B:HEM601 3.0 48.5 1.0
C4D B:HEM601 3.1 48.5 1.0
C1D B:HEM601 3.1 48.5 1.0
C1B B:HEM601 3.1 48.5 1.0
C4B B:HEM601 3.1 48.5 1.0
C4A B:HEM601 3.1 48.5 1.0
C1A B:HEM601 3.1 48.5 1.0
C4C B:HEM601 3.1 48.5 1.0
CE1 B:HIS115 3.1 36.3 1.0
CD2 B:HIS115 3.3 36.3 1.0
CHC B:HEM601 3.4 48.5 1.0
CHA B:HEM601 3.4 48.5 1.0
CHD B:HEM601 3.4 48.5 1.0
CHB B:HEM601 3.4 48.5 1.0
ND1 B:HIS222 4.0 40.5 1.0
CD2 B:HIS222 4.1 40.5 1.0
ND1 B:HIS115 4.2 36.3 1.0
C2C B:HEM601 4.3 48.5 1.0
C2D B:HEM601 4.3 48.5 1.0
C3D B:HEM601 4.3 48.5 1.0
C2B B:HEM601 4.3 48.5 1.0
C3A B:HEM601 4.3 48.5 1.0
C2A B:HEM601 4.3 48.5 1.0
C3B B:HEM601 4.3 48.5 1.0
C3C B:HEM601 4.3 48.5 1.0
CG B:HIS115 4.3 36.3 1.0
CG B:HIS222 4.5 40.5 1.0
ND1 B:HIS119 4.6 39.7 1.0
O B:ALA175 4.9 39.1 1.0
CE1 B:HIS119 5.0 39.7 1.0

Iron binding site 2 out of 2 in 8kei

Go back to Iron Binding Sites List in 8kei
Iron binding site 2 out of 2 in the Cryo-Em Structure of Nadph Oxidase 2 in Complex with P22PHOX and Eros


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Nadph Oxidase 2 in Complex with P22PHOX and Eros within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe602

b:50.3
occ:1.00
FE B:HEM602 0.0 50.3 1.0
NA B:HEM602 2.0 50.3 1.0
NB B:HEM602 2.0 50.3 1.0
ND B:HEM602 2.0 50.3 1.0
NC B:HEM602 2.0 50.3 1.0
NE2 B:HIS101 2.1 48.0 1.0
NE2 B:HIS209 2.8 58.9 1.0
CD2 B:HIS101 2.9 48.0 1.0
CE1 B:HIS209 3.0 58.9 1.0
C1D B:HEM602 3.0 50.3 1.0
C4D B:HEM602 3.0 50.3 1.0
C4B B:HEM602 3.1 50.3 1.0
C1B B:HEM602 3.1 50.3 1.0
C4A B:HEM602 3.1 50.3 1.0
C1A B:HEM602 3.1 50.3 1.0
C1C B:HEM602 3.1 50.3 1.0
C4C B:HEM602 3.1 50.3 1.0
CE1 B:HIS101 3.2 48.0 1.0
CHC B:HEM602 3.4 50.3 1.0
CHD B:HEM602 3.4 50.3 1.0
CHA B:HEM602 3.4 50.3 1.0
CHB B:HEM602 3.4 50.3 1.0
CD2 B:HIS209 4.1 58.9 1.0
CG B:HIS101 4.1 48.0 1.0
ND1 B:HIS101 4.2 48.0 1.0
C2D B:HEM602 4.2 50.3 1.0
C3D B:HEM602 4.2 50.3 1.0
ND1 B:HIS209 4.3 58.9 1.0
C3A B:HEM602 4.3 50.3 1.0
C2A B:HEM602 4.3 50.3 1.0
C2B B:HEM602 4.3 50.3 1.0
C3B B:HEM602 4.3 50.3 1.0
C2C B:HEM602 4.3 50.3 1.0
C3C B:HEM602 4.3 50.3 1.0
CG B:HIS209 4.8 58.9 1.0

Reference:

S.Y.Liang, A.J.Liu, Y.Z.Liu, R.D.Ye. Cryo-Em Structure of Nadph Oxidase 2 in Complex with P22PHOX and Eros To Be Published.
Page generated: Sat Aug 10 07:38:19 2024

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