Iron in PDB 8nse: Bovine Endothelial Nitric Oxide Synthase, Nna Complex
Enzymatic activity of Bovine Endothelial Nitric Oxide Synthase, Nna Complex
All present enzymatic activity of Bovine Endothelial Nitric Oxide Synthase, Nna Complex:
1.14.13.39;
Protein crystallography data
The structure of Bovine Endothelial Nitric Oxide Synthase, Nna Complex, PDB code: 8nse
was solved by
C.S.Raman,
H.Li,
P.Martasek,
B.S.S.Masters,
T.L.Poulos,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
2.25
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
58.310,
105.780,
156.610,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
22.7 /
27.6
|
Other elements in 8nse:
The structure of Bovine Endothelial Nitric Oxide Synthase, Nna Complex also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Bovine Endothelial Nitric Oxide Synthase, Nna Complex
(pdb code 8nse). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Bovine Endothelial Nitric Oxide Synthase, Nna Complex, PDB code: 8nse:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 8nse
Go back to
Iron Binding Sites List in 8nse
Iron binding site 1 out
of 2 in the Bovine Endothelial Nitric Oxide Synthase, Nna Complex
![](/pictures/FE/pdb/ns/8nse-FE-sphere_01.jpg) Mono view
![](/pictures/FE/pdb/ns/8nse-FE-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Bovine Endothelial Nitric Oxide Synthase, Nna Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe500
b:31.3
occ:1.00
|
FE
|
A:HEM500
|
0.0
|
31.3
|
1.0
|
NA
|
A:HEM500
|
1.9
|
29.2
|
1.0
|
NC
|
A:HEM500
|
2.0
|
32.4
|
1.0
|
ND
|
A:HEM500
|
2.0
|
31.8
|
1.0
|
NB
|
A:HEM500
|
2.0
|
29.3
|
1.0
|
SG
|
A:CYS186
|
2.3
|
36.3
|
1.0
|
C1A
|
A:HEM500
|
3.0
|
34.4
|
1.0
|
C4A
|
A:HEM500
|
3.0
|
31.3
|
1.0
|
C1C
|
A:HEM500
|
3.0
|
34.1
|
1.0
|
C4C
|
A:HEM500
|
3.0
|
32.7
|
1.0
|
C1D
|
A:HEM500
|
3.1
|
29.0
|
1.0
|
C4D
|
A:HEM500
|
3.1
|
34.5
|
1.0
|
C1B
|
A:HEM500
|
3.1
|
29.2
|
1.0
|
C4B
|
A:HEM500
|
3.1
|
31.2
|
1.0
|
CB
|
A:CYS186
|
3.3
|
31.2
|
1.0
|
CHD
|
A:HEM500
|
3.4
|
35.0
|
1.0
|
CHA
|
A:HEM500
|
3.5
|
30.4
|
1.0
|
CHB
|
A:HEM500
|
3.5
|
29.1
|
1.0
|
CHC
|
A:HEM500
|
3.5
|
31.3
|
1.0
|
CA
|
A:CYS186
|
4.0
|
31.6
|
1.0
|
NH1
|
A:NRG705
|
4.0
|
41.4
|
1.0
|
C2A
|
A:HEM500
|
4.2
|
34.1
|
1.0
|
C3A
|
A:HEM500
|
4.3
|
29.9
|
1.0
|
C2C
|
A:HEM500
|
4.3
|
31.6
|
1.0
|
C3D
|
A:HEM500
|
4.3
|
33.2
|
1.0
|
C3C
|
A:HEM500
|
4.3
|
31.2
|
1.0
|
N1
|
A:NRG705
|
4.3
|
44.4
|
1.0
|
NE1
|
A:TRP180
|
4.3
|
32.6
|
1.0
|
C2B
|
A:HEM500
|
4.3
|
30.6
|
1.0
|
C2D
|
A:HEM500
|
4.3
|
33.3
|
1.0
|
C3B
|
A:HEM500
|
4.3
|
30.4
|
1.0
|
O3
|
A:NRG705
|
4.6
|
39.7
|
1.0
|
CZ
|
A:NRG705
|
4.6
|
43.1
|
1.0
|
O2
|
A:NRG705
|
4.7
|
44.1
|
1.0
|
C
|
A:CYS186
|
4.7
|
32.8
|
1.0
|
N
|
A:VAL187
|
4.9
|
33.2
|
1.0
|
N
|
A:GLY188
|
4.9
|
36.9
|
1.0
|
NH2
|
A:NRG705
|
4.9
|
41.1
|
1.0
|
CD1
|
A:TRP180
|
5.0
|
32.5
|
1.0
|
|
Iron binding site 2 out
of 2 in 8nse
Go back to
Iron Binding Sites List in 8nse
Iron binding site 2 out
of 2 in the Bovine Endothelial Nitric Oxide Synthase, Nna Complex
![](/pictures/FE/pdb/ns/8nse-FE-sphere_02.jpg) Mono view
![](/pictures/FE/pdb/ns/8nse-FE-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Bovine Endothelial Nitric Oxide Synthase, Nna Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe500
b:32.5
occ:1.00
|
FE
|
B:HEM500
|
0.0
|
32.5
|
1.0
|
ND
|
B:HEM500
|
1.9
|
26.0
|
1.0
|
NB
|
B:HEM500
|
2.0
|
26.2
|
1.0
|
NC
|
B:HEM500
|
2.0
|
26.5
|
1.0
|
NA
|
B:HEM500
|
2.0
|
29.4
|
1.0
|
SG
|
B:CYS186
|
2.3
|
33.2
|
1.0
|
C1D
|
B:HEM500
|
3.0
|
25.8
|
1.0
|
C4D
|
B:HEM500
|
3.0
|
26.0
|
1.0
|
C1B
|
B:HEM500
|
3.1
|
29.6
|
1.0
|
C4C
|
B:HEM500
|
3.1
|
24.5
|
1.0
|
C4B
|
B:HEM500
|
3.1
|
27.4
|
1.0
|
C1C
|
B:HEM500
|
3.1
|
26.8
|
1.0
|
C1A
|
B:HEM500
|
3.1
|
29.0
|
1.0
|
C4A
|
B:HEM500
|
3.1
|
30.5
|
1.0
|
CB
|
B:CYS186
|
3.3
|
27.1
|
1.0
|
CHD
|
B:HEM500
|
3.4
|
27.0
|
1.0
|
CHA
|
B:HEM500
|
3.5
|
25.6
|
1.0
|
CHB
|
B:HEM500
|
3.5
|
28.4
|
1.0
|
CHC
|
B:HEM500
|
3.5
|
25.3
|
1.0
|
NH1
|
B:NRG706
|
3.9
|
35.4
|
1.0
|
CA
|
B:CYS186
|
4.0
|
29.9
|
1.0
|
NE1
|
B:TRP180
|
4.2
|
26.4
|
1.0
|
C2D
|
B:HEM500
|
4.2
|
25.7
|
1.0
|
C3D
|
B:HEM500
|
4.2
|
24.1
|
1.0
|
C2B
|
B:HEM500
|
4.3
|
24.1
|
1.0
|
N1
|
B:NRG706
|
4.3
|
33.0
|
1.0
|
C3B
|
B:HEM500
|
4.3
|
26.9
|
1.0
|
C3C
|
B:HEM500
|
4.3
|
26.7
|
1.0
|
C2C
|
B:HEM500
|
4.3
|
27.1
|
1.0
|
C3A
|
B:HEM500
|
4.4
|
29.0
|
1.0
|
C2A
|
B:HEM500
|
4.4
|
31.2
|
1.0
|
CZ
|
B:NRG706
|
4.5
|
34.4
|
1.0
|
O2
|
B:NRG706
|
4.7
|
36.4
|
1.0
|
O3
|
B:NRG706
|
4.7
|
31.4
|
1.0
|
N
|
B:GLY188
|
4.7
|
33.8
|
1.0
|
C
|
B:CYS186
|
4.8
|
31.0
|
1.0
|
NH2
|
B:NRG706
|
4.8
|
29.6
|
1.0
|
CD1
|
B:TRP180
|
4.8
|
29.4
|
1.0
|
N
|
B:VAL187
|
4.9
|
31.5
|
1.0
|
|
Reference:
C.S.Raman,
H.Li,
P.Martasek,
G.Southan,
B.S.Masters,
T.L.Poulos.
Crystal Structure of Nitric Oxide Synthase Bound to Nitro Indazole Reveals A Novel Inactivation Mechanism. Biochemistry V. 40 13448 2001.
ISSN: ISSN 0006-2960
PubMed: 11695891
DOI: 10.1021/BI010957U
Page generated: Sat Aug 10 07:41:08 2024
|