Iron in PDB 8p02: Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa
Other elements in 8p02:
The structure of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa
(pdb code 8p02). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa, PDB code: 8p02:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 8p02
Go back to
Iron Binding Sites List in 8p02
Iron binding site 1 out
of 12 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe603
b:100.2
occ:1.00
|
O9
|
A:BYN602
|
2.0
|
91.5
|
1.0
|
|
OE1
|
A:GLU235
|
2.0
|
91.3
|
1.0
|
|
ND1
|
A:HIS166
|
2.1
|
86.8
|
1.0
|
|
ND1
|
A:HIS189
|
2.1
|
84.8
|
1.0
|
|
OE2
|
A:GLU235
|
2.4
|
91.3
|
1.0
|
|
CD
|
A:GLU235
|
2.5
|
91.3
|
1.0
|
|
CE1
|
A:HIS166
|
3.0
|
86.8
|
1.0
|
|
CE1
|
A:HIS189
|
3.1
|
84.8
|
1.0
|
|
CG
|
A:HIS166
|
3.1
|
86.8
|
1.0
|
|
CG
|
A:HIS189
|
3.2
|
84.8
|
1.0
|
|
P1
|
A:BYN602
|
3.3
|
91.5
|
1.0
|
|
CB
|
A:HIS189
|
3.5
|
84.8
|
1.0
|
|
CB
|
A:HIS166
|
3.5
|
86.8
|
1.0
|
|
O8
|
A:BYN602
|
3.5
|
91.5
|
1.0
|
|
O10
|
A:BYN602
|
3.8
|
91.5
|
1.0
|
|
O
|
A:ILE167
|
3.9
|
86.6
|
1.0
|
|
CA
|
A:HIS166
|
3.9
|
86.8
|
1.0
|
|
K
|
A:K606
|
4.0
|
89.8
|
1.0
|
|
CG
|
A:GLU235
|
4.0
|
91.3
|
1.0
|
|
N
|
A:ILE167
|
4.1
|
86.6
|
1.0
|
|
NE2
|
A:HIS166
|
4.1
|
86.8
|
1.0
|
|
NE2
|
A:HIS189
|
4.2
|
84.8
|
1.0
|
|
CD2
|
A:HIS166
|
4.2
|
86.8
|
1.0
|
|
CD2
|
A:HIS189
|
4.3
|
84.8
|
1.0
|
|
C
|
A:HIS166
|
4.5
|
86.8
|
1.0
|
|
CZ
|
A:PHE161
|
4.5
|
92.8
|
1.0
|
|
O7
|
A:BYN602
|
4.6
|
91.5
|
1.0
|
|
C
|
A:ILE167
|
4.6
|
86.6
|
1.0
|
|
CB
|
A:GLU235
|
4.9
|
91.3
|
1.0
|
|
CA
|
A:HIS189
|
4.9
|
84.8
|
1.0
|
|
Iron binding site 2 out
of 12 in 8p02
Go back to
Iron Binding Sites List in 8p02
Iron binding site 2 out
of 12 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe604
b:98.3
occ:1.00
|
OD2
|
A:ASP436
|
2.4
|
78.4
|
1.0
|
|
O
|
A:ARG430
|
2.8
|
73.5
|
1.0
|
|
O
|
A:ASP476
|
2.8
|
74.0
|
1.0
|
|
O
|
A:THR478
|
2.9
|
73.5
|
1.0
|
|
O
|
A:HOH709
|
3.2
|
81.6
|
1.0
|
|
CG
|
A:ASP436
|
3.4
|
78.4
|
1.0
|
|
O
|
A:HOH708
|
3.6
|
78.2
|
1.0
|
|
N
|
A:THR478
|
3.7
|
73.5
|
1.0
|
|
C
|
A:ASP476
|
3.8
|
74.0
|
1.0
|
|
C
|
A:THR478
|
4.0
|
73.5
|
1.0
|
|
C
|
A:ARG430
|
4.0
|
73.5
|
1.0
|
|
C
|
A:ALA477
|
4.1
|
70.3
|
1.0
|
|
OD1
|
A:ASP436
|
4.1
|
78.4
|
1.0
|
|
CA
|
A:ALA477
|
4.1
|
70.3
|
1.0
|
|
CG
|
A:ASP476
|
4.2
|
74.0
|
1.0
|
|
OD2
|
A:ASP476
|
4.3
|
74.0
|
1.0
|
|
OD1
|
A:ASP476
|
4.3
|
74.0
|
1.0
|
|
CB
|
A:ASP436
|
4.4
|
78.4
|
1.0
|
|
N
|
A:ALA477
|
4.4
|
70.3
|
1.0
|
|
CA
|
A:THR478
|
4.4
|
73.5
|
1.0
|
|
OG1
|
A:THR478
|
4.6
|
73.5
|
1.0
|
|
CA
|
A:VAL431
|
4.6
|
76.1
|
1.0
|
|
N
|
A:VAL431
|
4.8
|
76.1
|
1.0
|
|
CB
|
A:ASP476
|
4.8
|
74.0
|
1.0
|
|
N
|
A:ASN432
|
4.8
|
80.5
|
1.0
|
|
O
|
A:ALA477
|
4.9
|
70.3
|
1.0
|
|
CA
|
A:ASP476
|
4.9
|
74.0
|
1.0
|
|
CB
|
A:ARG430
|
5.0
|
73.5
|
1.0
|
|
CA
|
A:ARG430
|
5.0
|
73.5
|
1.0
|
|
Iron binding site 3 out
of 12 in 8p02
Go back to
Iron Binding Sites List in 8p02
Iron binding site 3 out
of 12 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe603
b:101.0
occ:1.00
|
O9
|
B:BYN602
|
2.0
|
92.5
|
1.0
|
|
OE1
|
B:GLU235
|
2.0
|
92.7
|
1.0
|
|
ND1
|
B:HIS166
|
2.1
|
88.1
|
1.0
|
|
ND1
|
B:HIS189
|
2.1
|
85.8
|
1.0
|
|
OE2
|
B:GLU235
|
2.4
|
92.7
|
1.0
|
|
CD
|
B:GLU235
|
2.5
|
92.7
|
1.0
|
|
CE1
|
B:HIS166
|
3.0
|
88.1
|
1.0
|
|
CE1
|
B:HIS189
|
3.1
|
85.8
|
1.0
|
|
CG
|
B:HIS166
|
3.1
|
88.1
|
1.0
|
|
CG
|
B:HIS189
|
3.2
|
85.8
|
1.0
|
|
P1
|
B:BYN602
|
3.3
|
92.5
|
1.0
|
|
CB
|
B:HIS189
|
3.5
|
85.8
|
1.0
|
|
CB
|
B:HIS166
|
3.5
|
88.1
|
1.0
|
|
O8
|
B:BYN602
|
3.5
|
92.5
|
1.0
|
|
O10
|
B:BYN602
|
3.8
|
92.5
|
1.0
|
|
O
|
B:ILE167
|
3.9
|
88.2
|
1.0
|
|
CA
|
B:HIS166
|
3.9
|
88.1
|
1.0
|
|
K
|
B:K606
|
4.0
|
90.6
|
1.0
|
|
CG
|
B:GLU235
|
4.0
|
92.7
|
1.0
|
|
N
|
B:ILE167
|
4.1
|
88.2
|
1.0
|
|
NE2
|
B:HIS166
|
4.1
|
88.1
|
1.0
|
|
NE2
|
B:HIS189
|
4.2
|
85.8
|
1.0
|
|
CD2
|
B:HIS166
|
4.2
|
88.1
|
1.0
|
|
CD2
|
B:HIS189
|
4.3
|
85.8
|
1.0
|
|
C
|
B:HIS166
|
4.5
|
88.1
|
1.0
|
|
CZ
|
B:PHE161
|
4.5
|
91.6
|
1.0
|
|
O7
|
B:BYN602
|
4.6
|
92.5
|
1.0
|
|
C
|
B:ILE167
|
4.6
|
88.2
|
1.0
|
|
CB
|
B:GLU235
|
4.9
|
92.7
|
1.0
|
|
CA
|
B:HIS189
|
4.9
|
85.8
|
1.0
|
|
Iron binding site 4 out
of 12 in 8p02
Go back to
Iron Binding Sites List in 8p02
Iron binding site 4 out
of 12 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe604
b:96.6
occ:1.00
|
OD2
|
B:ASP436
|
2.4
|
77.9
|
1.0
|
|
O
|
B:ARG430
|
2.8
|
74.5
|
1.0
|
|
O
|
B:ASP476
|
2.8
|
74.5
|
1.0
|
|
O
|
B:THR478
|
2.9
|
73.7
|
1.0
|
|
O
|
B:HOH706
|
3.3
|
80.2
|
1.0
|
|
CG
|
B:ASP436
|
3.4
|
77.9
|
1.0
|
|
O
|
B:HOH705
|
3.6
|
80.2
|
1.0
|
|
N
|
B:THR478
|
3.7
|
73.7
|
1.0
|
|
C
|
B:ASP476
|
3.8
|
74.5
|
1.0
|
|
C
|
B:THR478
|
4.0
|
73.7
|
1.0
|
|
C
|
B:ARG430
|
4.0
|
74.5
|
1.0
|
|
C
|
B:ALA477
|
4.1
|
70.5
|
1.0
|
|
OD1
|
B:ASP436
|
4.1
|
77.9
|
1.0
|
|
CA
|
B:ALA477
|
4.1
|
70.5
|
1.0
|
|
CG
|
B:ASP476
|
4.2
|
74.5
|
1.0
|
|
OD2
|
B:ASP476
|
4.3
|
74.5
|
1.0
|
|
OD1
|
B:ASP476
|
4.3
|
74.5
|
1.0
|
|
CB
|
B:ASP436
|
4.4
|
77.9
|
1.0
|
|
N
|
B:ALA477
|
4.4
|
70.5
|
1.0
|
|
CA
|
B:THR478
|
4.4
|
73.7
|
1.0
|
|
OG1
|
B:THR478
|
4.6
|
73.7
|
1.0
|
|
CA
|
B:VAL431
|
4.6
|
76.9
|
1.0
|
|
N
|
B:VAL431
|
4.8
|
76.9
|
1.0
|
|
CB
|
B:ASP476
|
4.8
|
74.5
|
1.0
|
|
N
|
B:ASN432
|
4.8
|
81.0
|
1.0
|
|
O
|
B:ALA477
|
4.9
|
70.5
|
1.0
|
|
CA
|
B:ASP476
|
4.9
|
74.5
|
1.0
|
|
CB
|
B:ARG430
|
5.0
|
74.5
|
1.0
|
|
CA
|
B:ARG430
|
5.0
|
74.5
|
1.0
|
|
Iron binding site 5 out
of 12 in 8p02
Go back to
Iron Binding Sites List in 8p02
Iron binding site 5 out
of 12 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe603
b:101.1
occ:1.00
|
O9
|
C:BYN602
|
2.0
|
92.5
|
1.0
|
|
OE1
|
C:GLU235
|
2.0
|
92.9
|
1.0
|
|
ND1
|
C:HIS166
|
2.1
|
88.3
|
1.0
|
|
ND1
|
C:HIS189
|
2.1
|
85.9
|
1.0
|
|
OE2
|
C:GLU235
|
2.4
|
92.9
|
1.0
|
|
CD
|
C:GLU235
|
2.5
|
92.9
|
1.0
|
|
CE1
|
C:HIS166
|
3.0
|
88.3
|
1.0
|
|
CE1
|
C:HIS189
|
3.1
|
85.9
|
1.0
|
|
CG
|
C:HIS166
|
3.1
|
88.3
|
1.0
|
|
CG
|
C:HIS189
|
3.2
|
85.9
|
1.0
|
|
P1
|
C:BYN602
|
3.3
|
92.5
|
1.0
|
|
CB
|
C:HIS189
|
3.5
|
85.9
|
1.0
|
|
CB
|
C:HIS166
|
3.5
|
88.3
|
1.0
|
|
O8
|
C:BYN602
|
3.5
|
92.5
|
1.0
|
|
O10
|
C:BYN602
|
3.8
|
92.5
|
1.0
|
|
O
|
C:ILE167
|
3.9
|
88.4
|
1.0
|
|
CA
|
C:HIS166
|
3.9
|
88.3
|
1.0
|
|
K
|
C:K606
|
4.0
|
90.9
|
1.0
|
|
CG
|
C:GLU235
|
4.0
|
92.9
|
1.0
|
|
N
|
C:ILE167
|
4.1
|
88.4
|
1.0
|
|
NE2
|
C:HIS166
|
4.1
|
88.3
|
1.0
|
|
NE2
|
C:HIS189
|
4.2
|
85.9
|
1.0
|
|
CD2
|
C:HIS166
|
4.2
|
88.3
|
1.0
|
|
CD2
|
C:HIS189
|
4.3
|
85.9
|
1.0
|
|
C
|
C:HIS166
|
4.5
|
88.3
|
1.0
|
|
CZ
|
C:PHE161
|
4.5
|
91.7
|
1.0
|
|
O7
|
C:BYN602
|
4.6
|
92.5
|
1.0
|
|
C
|
C:ILE167
|
4.6
|
88.4
|
1.0
|
|
CB
|
C:GLU235
|
4.9
|
92.9
|
1.0
|
|
CA
|
C:HIS189
|
4.9
|
85.9
|
1.0
|
|
Iron binding site 6 out
of 12 in 8p02
Go back to
Iron Binding Sites List in 8p02
Iron binding site 6 out
of 12 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe604
b:96.5
occ:1.00
|
OD2
|
C:ASP436
|
2.4
|
77.9
|
1.0
|
|
O
|
C:ARG430
|
2.8
|
74.2
|
1.0
|
|
O
|
C:ASP476
|
2.8
|
74.3
|
1.0
|
|
O
|
C:THR478
|
2.9
|
73.6
|
1.0
|
|
CG
|
C:ASP436
|
3.4
|
77.9
|
1.0
|
|
O
|
C:HOH707
|
3.7
|
78.3
|
1.0
|
|
N
|
C:THR478
|
3.7
|
73.6
|
1.0
|
|
C
|
C:ASP476
|
3.8
|
74.3
|
1.0
|
|
C
|
C:THR478
|
4.0
|
73.6
|
1.0
|
|
C
|
C:ARG430
|
4.0
|
74.2
|
1.0
|
|
C
|
C:ALA477
|
4.1
|
70.3
|
1.0
|
|
OD1
|
C:ASP436
|
4.1
|
77.9
|
1.0
|
|
CA
|
C:ALA477
|
4.1
|
70.3
|
1.0
|
|
CG
|
C:ASP476
|
4.2
|
74.3
|
1.0
|
|
OD2
|
C:ASP476
|
4.2
|
74.3
|
1.0
|
|
OD1
|
C:ASP476
|
4.3
|
74.3
|
1.0
|
|
CB
|
C:ASP436
|
4.4
|
77.9
|
1.0
|
|
N
|
C:ALA477
|
4.4
|
70.3
|
1.0
|
|
CA
|
C:THR478
|
4.4
|
73.6
|
1.0
|
|
OG1
|
C:THR478
|
4.6
|
73.6
|
1.0
|
|
CA
|
C:VAL431
|
4.6
|
76.5
|
1.0
|
|
N
|
C:VAL431
|
4.8
|
76.5
|
1.0
|
|
CB
|
C:ASP476
|
4.8
|
74.3
|
1.0
|
|
N
|
C:ASN432
|
4.8
|
80.8
|
1.0
|
|
O
|
C:ALA477
|
4.9
|
70.3
|
1.0
|
|
CA
|
C:ASP476
|
4.9
|
74.3
|
1.0
|
|
CB
|
C:ARG430
|
5.0
|
74.2
|
1.0
|
|
CA
|
C:ARG430
|
5.0
|
74.2
|
1.0
|
|
Iron binding site 7 out
of 12 in 8p02
Go back to
Iron Binding Sites List in 8p02
Iron binding site 7 out
of 12 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe603
b:100.6
occ:1.00
|
O9
|
D:BYN602
|
2.0
|
91.3
|
1.0
|
|
OE1
|
D:GLU235
|
2.0
|
91.3
|
1.0
|
|
ND1
|
D:HIS166
|
2.1
|
86.8
|
1.0
|
|
ND1
|
D:HIS189
|
2.1
|
84.9
|
1.0
|
|
OE2
|
D:GLU235
|
2.4
|
91.3
|
1.0
|
|
CD
|
D:GLU235
|
2.5
|
91.3
|
1.0
|
|
CE1
|
D:HIS166
|
3.0
|
86.8
|
1.0
|
|
CE1
|
D:HIS189
|
3.1
|
84.9
|
1.0
|
|
CG
|
D:HIS166
|
3.1
|
86.8
|
1.0
|
|
CG
|
D:HIS189
|
3.2
|
84.9
|
1.0
|
|
P1
|
D:BYN602
|
3.3
|
91.3
|
1.0
|
|
CB
|
D:HIS189
|
3.5
|
84.9
|
1.0
|
|
CB
|
D:HIS166
|
3.5
|
86.8
|
1.0
|
|
O8
|
D:BYN602
|
3.5
|
91.3
|
1.0
|
|
O10
|
D:BYN602
|
3.8
|
91.3
|
1.0
|
|
O
|
D:ILE167
|
3.9
|
86.7
|
1.0
|
|
CA
|
D:HIS166
|
3.9
|
86.8
|
1.0
|
|
K
|
D:K606
|
4.0
|
90.0
|
1.0
|
|
CG
|
D:GLU235
|
4.0
|
91.3
|
1.0
|
|
N
|
D:ILE167
|
4.1
|
86.7
|
1.0
|
|
NE2
|
D:HIS166
|
4.1
|
86.8
|
1.0
|
|
NE2
|
D:HIS189
|
4.2
|
84.9
|
1.0
|
|
CD2
|
D:HIS166
|
4.2
|
86.8
|
1.0
|
|
CD2
|
D:HIS189
|
4.3
|
84.9
|
1.0
|
|
C
|
D:HIS166
|
4.5
|
86.8
|
1.0
|
|
CZ
|
D:PHE161
|
4.5
|
92.7
|
1.0
|
|
O7
|
D:BYN602
|
4.6
|
91.3
|
1.0
|
|
C
|
D:ILE167
|
4.6
|
86.7
|
1.0
|
|
CB
|
D:GLU235
|
4.9
|
91.3
|
1.0
|
|
CA
|
D:HIS189
|
4.9
|
84.9
|
1.0
|
|
Iron binding site 8 out
of 12 in 8p02
Go back to
Iron Binding Sites List in 8p02
Iron binding site 8 out
of 12 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe604
b:98.8
occ:1.00
|
OD2
|
D:ASP436
|
2.4
|
78.4
|
1.0
|
|
O
|
D:ARG430
|
2.8
|
73.4
|
1.0
|
|
O
|
D:ASP476
|
2.8
|
74.3
|
1.0
|
|
O
|
D:THR478
|
2.9
|
73.5
|
1.0
|
|
O
|
D:HOH710
|
3.3
|
82.3
|
1.0
|
|
CG
|
D:ASP436
|
3.4
|
78.4
|
1.0
|
|
O
|
D:HOH709
|
3.6
|
78.4
|
1.0
|
|
N
|
D:THR478
|
3.7
|
73.5
|
1.0
|
|
C
|
D:ASP476
|
3.8
|
74.3
|
1.0
|
|
C
|
D:THR478
|
4.0
|
73.5
|
1.0
|
|
C
|
D:ARG430
|
4.0
|
73.4
|
1.0
|
|
C
|
D:ALA477
|
4.1
|
70.3
|
1.0
|
|
OD1
|
D:ASP436
|
4.1
|
78.4
|
1.0
|
|
CA
|
D:ALA477
|
4.1
|
70.3
|
1.0
|
|
CG
|
D:ASP476
|
4.2
|
74.3
|
1.0
|
|
OD2
|
D:ASP476
|
4.2
|
74.3
|
1.0
|
|
OD1
|
D:ASP476
|
4.3
|
74.3
|
1.0
|
|
CB
|
D:ASP436
|
4.4
|
78.4
|
1.0
|
|
N
|
D:ALA477
|
4.4
|
70.3
|
1.0
|
|
CA
|
D:THR478
|
4.4
|
73.5
|
1.0
|
|
OG1
|
D:THR478
|
4.6
|
73.5
|
1.0
|
|
CA
|
D:VAL431
|
4.6
|
75.9
|
1.0
|
|
N
|
D:VAL431
|
4.8
|
75.9
|
1.0
|
|
CB
|
D:ASP476
|
4.8
|
74.3
|
1.0
|
|
N
|
D:ASN432
|
4.8
|
80.3
|
1.0
|
|
O
|
D:ALA477
|
4.9
|
70.3
|
1.0
|
|
CA
|
D:ASP476
|
4.9
|
74.3
|
1.0
|
|
CB
|
D:ARG430
|
5.0
|
73.4
|
1.0
|
|
CA
|
D:ARG430
|
5.0
|
73.4
|
1.0
|
|
Iron binding site 9 out
of 12 in 8p02
Go back to
Iron Binding Sites List in 8p02
Iron binding site 9 out
of 12 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe603
b:101.6
occ:1.00
|
O9
|
E:BYN602
|
2.0
|
91.7
|
1.0
|
|
OE1
|
E:GLU235
|
2.0
|
91.9
|
1.0
|
|
ND1
|
E:HIS166
|
2.1
|
88.5
|
1.0
|
|
ND1
|
E:HIS189
|
2.1
|
85.1
|
1.0
|
|
OE2
|
E:GLU235
|
2.4
|
91.9
|
1.0
|
|
CD
|
E:GLU235
|
2.5
|
91.9
|
1.0
|
|
CE1
|
E:HIS166
|
3.0
|
88.5
|
1.0
|
|
CE1
|
E:HIS189
|
3.1
|
85.1
|
1.0
|
|
CG
|
E:HIS166
|
3.1
|
88.5
|
1.0
|
|
CG
|
E:HIS189
|
3.2
|
85.1
|
1.0
|
|
P1
|
E:BYN602
|
3.3
|
91.7
|
1.0
|
|
CB
|
E:HIS189
|
3.5
|
85.1
|
1.0
|
|
CB
|
E:HIS166
|
3.5
|
88.5
|
1.0
|
|
O8
|
E:BYN602
|
3.5
|
91.7
|
1.0
|
|
O10
|
E:BYN602
|
3.8
|
91.7
|
1.0
|
|
O
|
E:ILE167
|
3.9
|
87.6
|
1.0
|
|
CA
|
E:HIS166
|
3.9
|
88.5
|
1.0
|
|
K
|
E:K606
|
4.0
|
89.4
|
1.0
|
|
CG
|
E:GLU235
|
4.0
|
91.9
|
1.0
|
|
N
|
E:ILE167
|
4.1
|
87.6
|
1.0
|
|
NE2
|
E:HIS166
|
4.1
|
88.5
|
1.0
|
|
NE2
|
E:HIS189
|
4.2
|
85.1
|
1.0
|
|
CD2
|
E:HIS166
|
4.2
|
88.5
|
1.0
|
|
CD2
|
E:HIS189
|
4.3
|
85.1
|
1.0
|
|
C
|
E:HIS166
|
4.5
|
88.5
|
1.0
|
|
CZ
|
E:PHE161
|
4.5
|
91.9
|
1.0
|
|
O7
|
E:BYN602
|
4.6
|
91.7
|
1.0
|
|
C
|
E:ILE167
|
4.6
|
87.6
|
1.0
|
|
CB
|
E:GLU235
|
4.9
|
91.9
|
1.0
|
|
CA
|
E:HIS189
|
4.9
|
85.1
|
1.0
|
|
Iron binding site 10 out
of 12 in 8p02
Go back to
Iron Binding Sites List in 8p02
Iron binding site 10 out
of 12 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe604
b:97.0
occ:1.00
|
OD2
|
E:ASP436
|
2.4
|
78.4
|
1.0
|
|
O
|
E:ARG430
|
2.8
|
73.8
|
1.0
|
|
O
|
E:ASP476
|
2.8
|
73.9
|
1.0
|
|
O
|
E:THR478
|
2.9
|
73.4
|
1.0
|
|
O
|
E:HOH709
|
3.3
|
80.0
|
1.0
|
|
CG
|
E:ASP436
|
3.4
|
78.4
|
1.0
|
|
O
|
E:HOH708
|
3.5
|
79.8
|
1.0
|
|
N
|
E:THR478
|
3.7
|
73.4
|
1.0
|
|
C
|
E:ASP476
|
3.8
|
73.9
|
1.0
|
|
C
|
E:THR478
|
4.0
|
73.4
|
1.0
|
|
C
|
E:ARG430
|
4.0
|
73.8
|
1.0
|
|
C
|
E:ALA477
|
4.1
|
70.0
|
1.0
|
|
OD1
|
E:ASP436
|
4.1
|
78.4
|
1.0
|
|
CA
|
E:ALA477
|
4.1
|
70.0
|
1.0
|
|
CG
|
E:ASP476
|
4.2
|
73.9
|
1.0
|
|
OD2
|
E:ASP476
|
4.3
|
73.9
|
1.0
|
|
OD1
|
E:ASP476
|
4.3
|
73.9
|
1.0
|
|
CB
|
E:ASP436
|
4.4
|
78.4
|
1.0
|
|
N
|
E:ALA477
|
4.4
|
70.0
|
1.0
|
|
CA
|
E:THR478
|
4.4
|
73.4
|
1.0
|
|
OG1
|
E:THR478
|
4.6
|
73.4
|
1.0
|
|
CA
|
E:VAL431
|
4.6
|
76.2
|
1.0
|
|
N
|
E:VAL431
|
4.8
|
76.2
|
1.0
|
|
CB
|
E:ASP476
|
4.8
|
73.9
|
1.0
|
|
N
|
E:ASN432
|
4.8
|
80.4
|
1.0
|
|
O
|
E:ALA477
|
4.9
|
70.0
|
1.0
|
|
CA
|
E:ASP476
|
4.9
|
73.9
|
1.0
|
|
CB
|
E:ARG430
|
5.0
|
73.8
|
1.0
|
|
CA
|
E:ARG430
|
5.0
|
73.8
|
1.0
|
|
Reference:
K.Kayastha,
U.Ermler.
Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa To Be Published.
Page generated: Sat Aug 10 08:45:06 2024
|
