Iron in PDB 8q4h: A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex

Other elements in 8q4h:

The structure of A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Cobalt (Co) 2 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iron atom in the A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex (pdb code 8q4h). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex, PDB code: 8q4h:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 16 in 8q4h

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Iron binding site 1 out of 16 in the A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex


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Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe603

b:30.8
occ:1.00
 FE1 A:SF4603 0.0 30.8 1.0
SG A:CYS485 2.3 22.7 1.0
S2 A:SF4603 2.3 30.8 1.0
S3 A:SF4603 2.3 30.8 1.0
S4 A:SF4603 2.3 30.8 1.0
FE3 A:SF4603 2.6 30.8 1.0
FE2 A:SF4603 2.7 30.8 1.0
FE4 A:SF4603 2.7 30.8 1.0
CB A:CYS485 3.3 22.7 1.0
CA A:CYS485 3.6 22.7 1.0
S1 A:SF4603 3.8 30.8 1.0
N A:SER486 4.0 23.9 1.0
C A:CYS485 4.3 22.7 1.0
CD1 A:TRP487 4.6 22.1 1.0
SG A:CYS426 4.7 26.4 1.0
ND2 A:ASN383 4.7 22.9 1.0
SG A:CYS420 4.8 28.0 1.0
N A:CYS485 4.8 22.7 1.0
CB A:CYS426 4.8 26.4 1.0
SG A:CYS423 4.8 30.9 1.0

Iron binding site 2 out of 16 in 8q4h

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Iron binding site 2 out of 16 in the A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe603

b:30.8
occ:1.00
 FE2 A:SF4603 0.0 30.8 1.0
SG A:CYS420 2.3 28.0 1.0
S1 A:SF4603 2.3 30.8 1.0
S3 A:SF4603 2.3 30.8 1.0
S4 A:SF4603 2.3 30.8 1.0
FE1 A:SF4603 2.7 30.8 1.0
FE3 A:SF4603 2.7 30.8 1.0
FE4 A:SF4603 2.7 30.8 1.0
CB A:CYS420 3.5 28.0 1.0
SG A:CYS423 3.8 30.9 1.0
S2 A:SF4603 3.9 30.8 1.0
N A:ARG382 3.9 26.9 1.0
CA A:CYS420 4.0 28.0 1.0
CB A:ARG382 4.1 26.9 1.0
SG A:CYS485 4.6 22.7 1.0
N A:CYS420 4.6 28.0 1.0
CA A:GLY381 4.7 23.7 1.0
CA A:ARG382 4.7 26.9 1.0
SG A:CYS426 4.7 26.4 1.0
C A:GLY381 4.8 23.7 1.0

Iron binding site 3 out of 16 in 8q4h

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Iron binding site 3 out of 16 in the A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe603

b:30.8
occ:1.00
 FE3 A:SF4603 0.0 30.8 1.0
S4 A:SF4603 2.2 30.8 1.0
S1 A:SF4603 2.3 30.8 1.0
SG A:CYS426 2.3 26.4 1.0
S2 A:SF4603 2.3 30.8 1.0
FE1 A:SF4603 2.6 30.8 1.0
FE2 A:SF4603 2.7 30.8 1.0
FE4 A:SF4603 2.7 30.8 1.0
CB A:CYS426 3.2 26.4 1.0
N A:CYS426 3.7 26.4 1.0
S3 A:SF4603 3.8 30.8 1.0
CB A:ARG382 3.9 26.9 1.0
CA A:CYS426 4.0 26.4 1.0
SG A:CYS423 4.2 30.9 1.0
CD A:ARG382 4.4 26.9 1.0
CG A:ARG382 4.5 26.9 1.0
N A:LYS425 4.6 26.8 1.0
N A:ARG382 4.6 26.9 1.0
N A:ASN383 4.7 22.9 1.0
SG A:CYS420 4.7 28.0 1.0
ND2 A:ASN383 4.7 22.9 1.0
SG A:CYS485 4.7 22.7 1.0
CA A:ARG382 4.8 26.9 1.0
CG A:ASN383 4.8 22.9 1.0
C A:LYS425 4.8 26.8 1.0

Iron binding site 4 out of 16 in 8q4h

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Iron binding site 4 out of 16 in the A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe603

b:30.8
occ:1.00
 FE4 A:SF4603 0.0 30.8 1.0
S3 A:SF4603 2.2 30.8 1.0
SG A:CYS423 2.3 30.9 1.0
S2 A:SF4603 2.3 30.8 1.0
S1 A:SF4603 2.3 30.8 1.0
FE1 A:SF4603 2.7 30.8 1.0
FE3 A:SF4603 2.7 30.8 1.0
FE2 A:SF4603 2.7 30.8 1.0
CB A:CYS423 3.5 30.9 1.0
S4 A:SF4603 3.9 30.8 1.0
CB A:LYS425 4.1 26.8 1.0
N A:LYS425 4.1 26.8 1.0
N A:CYS426 4.5 26.4 1.0
N A:LYS424 4.6 29.6 1.0
CA A:LYS425 4.6 26.8 1.0
SG A:CYS420 4.6 28.0 1.0
CD2 A:PHE419 4.7 29.1 1.0
SG A:CYS426 4.7 26.4 1.0
N A:SER486 4.7 23.9 1.0
SG A:CYS485 4.7 22.7 1.0
OG A:SER486 4.7 23.9 1.0
CE2 A:PHE419 4.8 29.1 1.0
CA A:CYS423 4.8 30.9 1.0
CA A:CYS420 4.9 28.0 1.0
C A:CYS423 5.0 30.9 1.0

Iron binding site 5 out of 16 in 8q4h

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Iron binding site 5 out of 16 in the A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe604

b:27.5
occ:1.00
 FE1 A:SF4604 0.0 27.5 1.0
S2 A:SF4604 2.2 27.5 1.0
S4 A:SF4604 2.2 27.5 1.0
S3 A:SF4604 2.3 27.5 1.0
SG A:CYS430 2.3 30.3 1.0
FE3 A:SF4604 2.7 27.5 1.0
FE4 A:SF4604 2.7 27.5 1.0
FE2 A:SF4604 2.7 27.5 1.0
CB A:CYS430 3.5 30.3 1.0
S1 A:SF4604 3.8 27.5 1.0
CA A:CYS430 4.0 30.3 1.0
CD A:PRO431 4.3 29.6 1.0
SG A:CYS478 4.3 25.2 1.0
SG A:CYS467 4.6 27.3 1.0
CB A:ALA434 4.6 32.8 1.0
C A:CYS430 4.6 30.3 1.0
N A:PRO431 4.7 29.6 1.0
N A:ALA432 4.8 32.1 1.0
CB A:CYS467 4.8 27.3 1.0
SG A:CYS481 4.9 22.4 1.0
CB A:ALA432 4.9 32.1 1.0
CG A:PRO431 5.0 29.6 1.0
N A:ALA434 5.0 32.8 1.0
CD1 A:ILE435 5.0 30.0 1.0

Iron binding site 6 out of 16 in 8q4h

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Iron binding site 6 out of 16 in the A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe604

b:27.5
occ:1.00
 FE2 A:SF4604 0.0 27.5 1.0
SG A:CYS467 2.0 27.3 1.0
S1 A:SF4604 2.2 27.5 1.0
S4 A:SF4604 2.3 27.5 1.0
S3 A:SF4604 2.3 27.5 1.0
FE4 A:SF4604 2.7 27.5 1.0
FE3 A:SF4604 2.7 27.5 1.0
FE1 A:SF4604 2.7 27.5 1.0
CB A:CYS467 3.0 27.3 1.0
CA A:CYS467 3.7 27.3 1.0
S2 A:SF4604 3.8 27.5 1.0
C42 A:COB602 4.1 53.0 1.0
NE1 A:TRP471 4.1 25.6 1.0
O A:CYS467 4.3 27.3 1.0
SG A:CYS478 4.3 25.2 1.0
C A:CYS467 4.5 27.3 1.0
SG A:CYS430 4.7 30.3 1.0
CD1 A:TRP471 4.8 25.6 1.0
C8 A:COB602 4.8 52.0 1.0
N A:CYS467 4.8 27.3 1.0
SG A:CYS481 5.0 22.4 1.0

Iron binding site 7 out of 16 in 8q4h

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Iron binding site 7 out of 16 in the A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe604

b:27.5
occ:1.00
 FE3 A:SF4604 0.0 27.5 1.0
S2 A:SF4604 2.2 27.5 1.0
S1 A:SF4604 2.2 27.5 1.0
S4 A:SF4604 2.2 27.5 1.0
SG A:CYS481 2.4 22.4 1.0
FE4 A:SF4604 2.7 27.5 1.0
FE1 A:SF4604 2.7 27.5 1.0
FE2 A:SF4604 2.7 27.5 1.0
CB A:CYS481 3.4 22.4 1.0
S3 A:SF4604 3.8 27.5 1.0
C42 A:COB602 3.9 53.0 1.0
N A:CYS481 4.0 22.4 1.0
SG A:CYS478 4.2 25.2 1.0
CA A:CYS481 4.3 22.4 1.0
SG A:CYS467 4.4 27.3 1.0
C41 A:COB602 4.6 52.4 1.0
N A:ASN480 4.7 23.2 1.0
SG A:CYS430 4.7 30.3 1.0
CD1 A:ILE435 4.8 30.0 1.0
C8 A:COB602 4.8 52.0 1.0
C43 A:COB602 4.9 54.0 1.0
N45 A:COB602 4.9 53.8 1.0

Iron binding site 8 out of 16 in 8q4h

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Iron binding site 8 out of 16 in the A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe604

b:27.5
occ:1.00
 FE4 A:SF4604 0.0 27.5 1.0
SG A:CYS478 1.8 25.2 1.0
S3 A:SF4604 2.2 27.5 1.0
S2 A:SF4604 2.2 27.5 1.0
S1 A:SF4604 2.3 27.5 1.0
FE3 A:SF4604 2.7 27.5 1.0
FE2 A:SF4604 2.7 27.5 1.0
FE1 A:SF4604 2.7 27.5 1.0
CB A:CYS478 3.3 25.2 1.0
S4 A:SF4604 3.8 27.5 1.0
N A:ASN480 4.2 23.2 1.0
CD A:PRO431 4.2 29.6 1.0
CA A:CYS478 4.2 25.2 1.0
C A:CYS478 4.3 25.2 1.0
N A:SER479 4.3 23.3 1.0
SG A:CYS467 4.4 27.3 1.0
CG A:PRO431 4.4 29.6 1.0
CB A:ASN480 4.5 23.2 1.0
NE1 A:TRP471 4.6 25.6 1.0
SG A:CYS481 4.7 22.4 1.0
SG A:CYS430 4.7 30.3 1.0
CD2 A:PHE470 4.7 28.8 1.0
O A:CYS478 4.8 25.2 1.0
N A:CYS478 4.8 25.2 1.0
N A:CYS481 4.8 22.4 1.0
CA A:ASN480 4.9 23.2 1.0

Iron binding site 9 out of 16 in 8q4h

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Iron binding site 9 out of 16 in the A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe603

b:30.3
occ:1.00
 FE1 B:SF4603 0.0 30.3 1.0
SG B:CYS485 2.3 22.5 1.0
S2 B:SF4603 2.3 30.3 1.0
S3 B:SF4603 2.3 30.3 1.0
S4 B:SF4603 2.3 30.3 1.0
FE3 B:SF4603 2.6 30.3 1.0
FE2 B:SF4603 2.7 30.3 1.0
FE4 B:SF4603 2.7 30.3 1.0
CB B:CYS485 3.3 22.5 1.0
CA B:CYS485 3.6 22.5 1.0
S1 B:SF4603 3.8 30.3 1.0
N B:SER486 4.0 23.4 1.0
C B:CYS485 4.3 22.5 1.0
CD1 B:TRP487 4.6 21.7 1.0
SG B:CYS426 4.7 26.4 1.0
ND2 B:ASN383 4.7 22.4 1.0
SG B:CYS420 4.8 27.4 1.0
CB B:CYS426 4.8 26.4 1.0
SG B:CYS423 4.8 30.5 1.0
N B:CYS485 4.8 22.5 1.0
CD1 B:ILE387 4.9 20.6 1.0

Iron binding site 10 out of 16 in 8q4h

Go back to Iron Binding Sites List in 8q4h
Iron binding site 10 out of 16 in the A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of A Membrane-Bound Menaquinol:Organohalide Oxidoreductase Complex Rdh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe603

b:30.3
occ:1.00
 FE2 B:SF4603 0.0 30.3 1.0
SG B:CYS420 2.3 27.4 1.0
S1 B:SF4603 2.3 30.3 1.0
S4 B:SF4603 2.3 30.3 1.0
S3 B:SF4603 2.3 30.3 1.0
FE1 B:SF4603 2.7 30.3 1.0
FE3 B:SF4603 2.7 30.3 1.0
FE4 B:SF4603 2.7 30.3 1.0
CB B:CYS420 3.5 27.4 1.0
SG B:CYS423 3.8 30.5 1.0
S2 B:SF4603 3.9 30.3 1.0
N B:ARG382 3.9 26.8 1.0
CA B:CYS420 4.0 27.4 1.0
CB B:ARG382 4.1 26.8 1.0
SG B:CYS485 4.6 22.5 1.0
N B:CYS420 4.6 27.4 1.0
CA B:GLY381 4.7 23.2 1.0
CA B:ARG382 4.7 26.8 1.0
SG B:CYS426 4.7 26.4 1.0
C B:GLY381 4.8 23.2 1.0

Reference:

N.Dongchun, B.Ekundayo, S.Henning, M.Julien, C.Holliger, L.Cimmino. Structure of A Membrane-Bound Menaquinol:Organohalide Oxidoreductase To Be Published.
Page generated: Sat Aug 10 14:30:44 2024

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