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Iron in PDB 8qby: Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs

Other elements in 8qby:

The structure of Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Sodium (Na) 1 atom
Calcium (Ca) 4 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs (pdb code 8qby). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs, PDB code: 8qby:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 8qby

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Iron binding site 1 out of 28 in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe801

b:42.5
occ:1.00
 FE1 G:SF4801 0.0 42.5 1.0
SG G:CYS119 2.3 26.1 1.0
S4 G:SF4801 2.3 23.5 1.0
S2 G:SF4801 2.3 21.1 1.0
S3 G:SF4801 2.3 24.0 1.0
FE4 G:SF4801 2.7 37.0 1.0
FE3 G:SF4801 2.7 39.4 1.0
FE2 G:SF4801 2.8 38.6 1.0
CB G:CYS119 3.3 10.2 1.0
S1 G:SF4801 3.9 27.4 1.0
CG G:GLN122 3.9 10.7 1.0
CB G:LEU121 4.3 17.2 1.0
N G:GLN122 4.4 18.3 1.0
CD G:GLN122 4.4 11.9 1.0
NE2 G:HIS106 4.4 20.3 1.0
CB G:GLN115 4.5 25.2 1.0
CG G:GLN115 4.6 20.0 1.0
CB G:GLN122 4.7 8.4 1.0
SG G:CYS113 4.7 25.7 1.0
CA G:CYS119 4.7 16.5 1.0
CD2 G:LEU121 4.8 18.4 1.0
OE1 G:GLN122 4.8 26.9 1.0
SG G:CYS110 4.8 19.3 1.0
CG1 G:VAL210 4.9 16.8 1.0
NE2 G:GLN122 4.9 18.1 1.0
CG G:LEU121 5.0 23.3 1.0

Iron binding site 2 out of 28 in 8qby

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Iron binding site 2 out of 28 in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe801

b:38.6
occ:1.00
 FE2 G:SF4801 0.0 38.6 1.0
SG G:CYS110 2.3 19.3 1.0
S1 G:SF4801 2.3 27.4 1.0
S3 G:SF4801 2.3 24.0 1.0
S4 G:SF4801 2.3 23.5 1.0
FE3 G:SF4801 2.7 39.4 1.0
FE4 G:SF4801 2.7 37.0 1.0
FE1 G:SF4801 2.8 42.5 1.0
CB G:CYS110 3.3 9.4 1.0
CA G:CYS110 3.5 11.9 1.0
N G:CYS110 3.8 19.6 1.0
NE2 G:GLN122 3.9 18.1 1.0
S2 G:SF4801 3.9 21.1 1.0
CG G:GLN122 4.0 10.7 1.0
CD G:GLN122 4.1 11.9 1.0
CE D:MET324 4.3 17.8 1.0
NE2 G:HIS106 4.5 20.3 1.0
C G:ASP109 4.6 18.3 1.0
SG G:CYS113 4.8 25.7 1.0
CD2 G:HIS106 4.8 10.4 1.0
C G:CYS110 4.9 12.7 1.0
SG G:CYS119 4.9 26.1 1.0
CB G:CYS113 4.9 17.1 1.0
CG1 D:ILE328 5.0 21.2 1.0

Iron binding site 3 out of 28 in 8qby

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Iron binding site 3 out of 28 in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe801

b:39.4
occ:1.00
 FE3 G:SF4801 0.0 39.4 1.0
NE2 G:HIS106 2.0 20.3 1.0
S2 G:SF4801 2.3 21.1 1.0
S1 G:SF4801 2.3 27.4 1.0
S4 G:SF4801 2.3 23.5 1.0
FE2 G:SF4801 2.7 38.6 1.0
FE4 G:SF4801 2.7 37.0 1.0
FE1 G:SF4801 2.7 42.5 1.0
CD2 G:HIS106 2.8 10.4 1.0
CE1 G:HIS106 3.1 17.8 1.0
S3 G:SF4801 3.9 24.0 1.0
CG G:HIS106 4.0 15.5 1.0
ND1 G:HIS106 4.1 16.2 1.0
CD2 G:LEU121 4.1 18.4 1.0
O G:PRO107 4.7 28.8 1.0
CG G:ARG157 4.7 17.2 1.0
SG G:CYS119 4.7 26.1 1.0
SG G:CYS110 4.8 19.3 1.0
SG G:CYS113 4.8 25.7 1.0
CE D:MET324 4.8 17.8 1.0

Iron binding site 4 out of 28 in 8qby

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Iron binding site 4 out of 28 in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe801

b:37.0
occ:1.00
 FE4 G:SF4801 0.0 37.0 1.0
SG G:CYS113 2.3 25.7 1.0
S2 G:SF4801 2.3 21.1 1.0
S3 G:SF4801 2.3 24.0 1.0
S1 G:SF4801 2.3 27.4 1.0
FE1 G:SF4801 2.7 42.5 1.0
FE3 G:SF4801 2.7 39.4 1.0
FE2 G:SF4801 2.7 38.6 1.0
CB G:CYS113 3.1 17.1 1.0
S4 G:SF4801 3.9 23.5 1.0
CB G:GLN115 4.2 25.2 1.0
CD G:ARG157 4.4 16.7 1.0
N G:GLY211 4.5 18.4 1.0
CA G:CYS110 4.5 11.9 1.0
NE2 G:HIS106 4.5 20.3 1.0
CA G:CYS113 4.6 15.3 1.0
N G:GLY116 4.6 21.6 1.0
N G:CYS110 4.7 19.6 1.0
SG G:CYS119 4.7 26.1 1.0
CA G:GLY211 4.8 15.2 1.0
SG G:CYS110 4.8 19.3 1.0
NE G:ARG157 4.9 12.0 1.0
CG G:ARG157 4.9 17.2 1.0
C G:ASP109 4.9 18.3 1.0
C G:CYS113 5.0 14.3 1.0
N G:GLN115 5.0 18.1 1.0
O G:ASP109 5.0 30.1 1.0

Iron binding site 5 out of 28 in 8qby

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Iron binding site 5 out of 28 in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe802

b:42.0
occ:1.00
 FE1 G:SF4802 0.0 42.0 1.0
S4 G:SF4802 2.3 20.6 1.0
S2 G:SF4802 2.3 29.2 1.0
SG G:CYS161 2.3 28.4 1.0
S3 G:SF4802 2.3 19.8 1.0
FE3 G:SF4802 2.7 39.9 1.0
FE4 G:SF4802 2.7 39.8 1.0
FE2 G:SF4802 2.7 37.7 1.0
CB G:CYS161 3.4 25.6 1.0
N G:CYS161 3.4 26.8 1.0
N G:THR162 3.5 19.5 1.0
CA G:CYS161 3.7 20.5 1.0
S1 G:SF4802 3.9 19.6 1.0
C G:CYS161 4.0 17.2 1.0
N G:ARG163 4.0 17.4 1.0
CD G:PRO209 4.1 19.8 1.0
CA G:THR162 4.4 23.2 1.0
C G:SER160 4.5 28.6 1.0
N G:SER160 4.6 19.1 1.0
CB G:ARG163 4.6 18.8 1.0
C G:THR162 4.7 16.1 1.0
SG G:CYS208 4.7 22.9 1.0
SG G:CYS164 4.7 31.8 1.0
N G:CYS164 4.7 27.6 1.0
SG G:CYS158 4.8 26.4 1.0
CG G:PRO209 4.8 28.3 1.0
CA G:ARG163 4.8 11.3 1.0
CA G:SER160 4.9 17.7 1.0
O G:CYS161 5.0 28.6 1.0
CG1 G:ILE159 5.0 22.3 1.0

Iron binding site 6 out of 28 in 8qby

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Iron binding site 6 out of 28 in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe802

b:37.7
occ:1.00
 FE2 G:SF4802 0.0 37.7 1.0
SG G:CYS158 2.3 26.4 1.0
S3 G:SF4802 2.3 19.8 1.0
S1 G:SF4802 2.3 19.6 1.0
S4 G:SF4802 2.3 20.6 1.0
FE3 G:SF4802 2.7 39.9 1.0
FE4 G:SF4802 2.7 39.8 1.0
FE1 G:SF4802 2.7 42.0 1.0
CB G:CYS158 3.3 16.0 1.0
CA G:CYS158 3.8 12.4 1.0
N G:SER160 3.9 19.1 1.0
S2 G:SF4802 3.9 29.2 1.0
N G:ILE159 4.1 23.3 1.0
C G:CYS158 4.3 19.6 1.0
CG1 G:ILE188 4.4 32.1 1.0
CA G:SER160 4.4 17.7 1.0
N G:CYS161 4.4 26.8 1.0
CB G:ALA212 4.6 18.5 1.0
CE G:MET155 4.7 22.1 1.0
SG G:CYS164 4.8 31.8 1.0
SG G:CYS208 4.8 22.9 1.0
C G:ILE159 4.8 21.7 1.0
CB G:ILE188 4.9 35.8 1.0
C G:SER160 4.9 28.6 1.0
SG G:CYS161 5.0 28.4 1.0

Iron binding site 7 out of 28 in 8qby

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Iron binding site 7 out of 28 in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe802

b:39.9
occ:1.00
 FE3 G:SF4802 0.0 39.9 1.0
SG G:CYS164 2.3 31.8 1.0
S4 G:SF4802 2.3 20.6 1.0
S2 G:SF4802 2.3 29.2 1.0
S1 G:SF4802 2.3 19.6 1.0
FE1 G:SF4802 2.7 42.0 1.0
FE2 G:SF4802 2.7 37.7 1.0
FE4 G:SF4802 2.7 39.8 1.0
CB G:CYS164 3.2 24.9 1.0
N G:CYS164 3.8 27.6 1.0
S3 G:SF4802 3.9 19.8 1.0
CD1 G:LEU213 4.1 22.1 1.0
CA G:CYS164 4.1 19.4 1.0
CG2 G:ILE188 4.5 33.8 1.0
N G:ARG163 4.5 17.4 1.0
N G:THR162 4.6 19.5 1.0
CG1 G:ILE188 4.6 32.1 1.0
CD1 G:ILE188 4.7 31.2 1.0
CA G:THR162 4.7 23.2 1.0
SG G:CYS161 4.7 28.4 1.0
SG G:CYS158 4.8 26.4 1.0
CG G:LEU213 4.8 25.9 1.0
SG G:CYS208 4.8 22.9 1.0
C G:THR162 4.9 16.1 1.0
C G:ARG163 4.9 21.2 1.0

Iron binding site 8 out of 28 in 8qby

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Iron binding site 8 out of 28 in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe802

b:39.8
occ:1.00
 FE4 G:SF4802 0.0 39.8 1.0
SG G:CYS208 2.3 22.9 1.0
S1 G:SF4802 2.3 19.6 1.0
S2 G:SF4802 2.3 29.2 1.0
S3 G:SF4802 2.3 19.8 1.0
FE2 G:SF4802 2.7 37.7 1.0
FE3 G:SF4802 2.7 39.9 1.0
FE1 G:SF4802 2.7 42.0 1.0
CB G:CYS208 3.3 18.2 1.0
CA G:CYS208 3.8 15.6 1.0
S4 G:SF4802 3.9 20.6 1.0
CB G:ALA212 4.1 18.5 1.0
CD G:PRO209 4.2 19.8 1.0
CD1 G:LEU213 4.2 22.1 1.0
CG G:LEU213 4.2 25.9 1.0
CG2 G:VAL210 4.5 20.0 1.0
C G:CYS208 4.6 26.5 1.0
SG G:CYS161 4.6 28.4 1.0
N G:PRO209 4.7 21.6 1.0
N G:LEU213 4.8 20.5 1.0
SG G:CYS164 4.8 31.8 1.0
SG G:CYS158 4.8 26.4 1.0
CB G:LEU213 5.0 26.3 1.0

Iron binding site 9 out of 28 in 8qby

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Iron binding site 9 out of 28 in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe803

b:44.7
occ:1.00
 FE1 G:FES803 0.0 44.7 1.0
S1 G:FES803 2.2 27.0 1.0
S2 G:FES803 2.2 27.1 1.0
SG G:CYS51 2.3 33.9 1.0
SG G:CYS66 2.3 30.3 1.0
FE2 G:FES803 2.7 43.1 1.0
CB G:CYS66 3.2 27.0 1.0
CB G:CYS51 3.3 21.8 1.0
SG G:CYS37 4.1 23.6 1.0
O G:HOH1044 4.2 22.0 1.0
N G:CYS66 4.2 23.6 1.0
N G:CYS51 4.3 30.7 1.0
CA G:CYS66 4.4 30.1 1.0
CA G:CYS51 4.4 25.8 1.0
SG G:CYS48 4.5 27.7 1.0
CA G:GLY46 4.5 16.4 1.0
CB G:ALA64 4.5 27.6 1.0
CB G:TYR38 4.7 20.2 1.0
N G:ARG49 4.9 27.8 1.0

Iron binding site 10 out of 28 in 8qby

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Iron binding site 10 out of 28 in the Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe803

b:43.1
occ:1.00
 FE2 G:FES803 0.0 43.1 1.0
S2 G:FES803 2.2 27.1 1.0
S1 G:FES803 2.2 27.0 1.0
SG G:CYS48 2.3 27.7 1.0
SG G:CYS37 2.3 23.6 1.0
FE1 G:FES803 2.7 44.7 1.0
CB G:CYS48 3.3 16.6 1.0
CB G:CYS37 3.4 18.6 1.0
N G:CYS48 3.5 19.1 1.0
N G:CYS37 3.6 16.0 1.0
N G:ARG49 3.7 27.8 1.0
CA G:CYS48 3.8 12.5 1.0
CA G:CYS37 3.9 10.5 1.0
N G:TYR38 4.0 26.1 1.0
C G:CYS48 4.2 20.4 1.0
O G:HOH1044 4.2 22.0 1.0
N G:ASN47 4.3 29.4 1.0
C G:CYS37 4.4 16.0 1.0
SG G:CYS66 4.4 30.3 1.0
N G:PHE36 4.4 21.2 1.0
N G:MET50 4.5 25.3 1.0
CA G:GLY46 4.5 16.4 1.0
C G:GLY46 4.5 20.4 1.0
C G:ASN47 4.6 17.7 1.0
SG G:CYS51 4.7 33.9 1.0
C G:PHE36 4.7 21.8 1.0
CA G:ARG49 4.7 22.0 1.0
N G:GLY46 4.7 21.1 1.0
CB G:TYR38 5.0 20.2 1.0

Reference:

B.S.Ivanov, H.R.Bridges, J.Hirst, O.D.Jarman. Respiratory Complex I From Paracoccus Denitrificans To Be Published.
Page generated: Sat Sep 28 21:39:11 2024

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