Iron in PDB 8qrk: Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1

The structure of Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1 also contains other interesting chemical elements:

Potassium	(K)	17 atoms
Magnesium	(Mg)	49 atoms
Zinc	(Zn)	1 atom

The binding sites of Iron atom in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1 (pdb code 8qrk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1, PDB code: 8qrk:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe201 b:58.7 occ:1.00 FE1 P:FES201 0.0 58.7 1.0 S2 P:FES201 2.2 62.2 1.0 S1 P:FES201 2.2 46.1 1.0 SG P:CYS68 2.3 114.2 1.0 SG E:CYS105 2.3 78.0 1.0 CB E:CYS105 2.6 82.9 1.0 FE2 P:FES201 3.1 48.5 1.0 CB P:CYS68 3.5 129.4 1.0 CA E:CYS105 4.0 90.7 1.0 CA P:CYS68 4.2 129.3 1.0 C E:CYS105 4.4 93.8 1.0 N E:GLY107 4.4 99.2 1.0 SG P:CYS65 4.5 174.6 1.0 CA E:GLY107 4.6 103.2 1.0 O E:CYS105 4.8 94.5 1.0 SG P:CYS100 4.9 204.3 1.0 N E:GLU106 4.9 99.7 1.0 N E:CYS105 4.9 93.8 1.0

Iron binding site 2 out of 4 in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe201 b:48.5 occ:1.00 FE2 P:FES201 0.0 48.5 1.0 S1 P:FES201 2.2 46.1 1.0 S2 P:FES201 2.2 62.2 1.0 SG P:CYS65 2.3 174.6 1.0 SG P:CYS100 2.3 204.3 1.0 FE1 P:FES201 3.1 58.7 1.0 CB P:CYS100 3.3 212.7 1.0 CB P:CYS65 3.7 183.7 1.0 CB P:CYS68 4.3 129.4 1.0 CB P:LYS103 4.4 208.0 1.0 N P:CYS65 4.4 172.7 1.0 SG P:CYS68 4.4 114.2 1.0 N P:CYS100 4.4 218.2 1.0 CA P:CYS100 4.5 217.2 1.0 CA P:CYS68 4.5 129.3 1.0 SG E:CYS105 4.6 78.0 1.0 CA P:CYS65 4.7 175.4 1.0 N P:CYS68 4.8 142.9 1.0 CG P:LYS103 4.8 203.8 1.0 CD P:LYS103 4.9 204.5 1.0

Iron binding site 3 out of 4 in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ T:Fe201 b:173.1 occ:1.00 FE1 T:FES201 0.0 173.1 1.0 S2 T:FES201 2.2 176.1 1.0 S1 T:FES201 2.2 171.7 1.0 SG T:CYS149 2.3 342.6 1.0 SG M:CYS26 2.3 168.5 1.0 FE2 T:FES201 3.1 170.9 1.0 CB M:CYS26 3.4 169.3 1.0 CB T:CYS149 3.4 344.2 1.0 N M:CYS26 3.8 174.8 1.0 CA T:CYS149 4.1 344.8 1.0 CA M:CYS26 4.2 169.8 1.0 CD T:PRO150 4.3 339.8 1.0 SG T:CYS141 4.3 357.0 1.0 C M:GLY25 4.7 193.6 1.0 CA M:GLY25 4.8 195.7 1.0 N T:PRO150 4.9 342.8 1.0 C T:CYS149 5.0 344.6 1.0

Iron binding site 4 out of 4 in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ T:Fe201 b:170.9 occ:1.00 FE2 T:FES201 0.0 170.9 1.0 S2 T:FES201 2.2 176.1 1.0 S1 T:FES201 2.2 171.7 1.0 SG T:CYS141 2.3 357.0 1.0 SG T:CYS139 2.3 362.8 1.0 CB T:CYS139 2.7 370.9 1.0 FE1 T:FES201 3.1 173.1 1.0 CB T:CYS141 3.3 350.3 1.0 N T:CYS141 4.2 362.8 1.0 CA T:CYS139 4.2 389.0 1.0 CA T:CYS141 4.4 358.6 1.0 CB T:CYS149 4.5 344.2 1.0 CA M:GLY25 4.6 195.7 1.0 SG T:CYS149 4.6 342.6 1.0 C T:CYS139 4.7 386.2 1.0 N T:ILE140 4.7 376.4 1.0 CA T:CYS149 4.9 344.8 1.0 CG M:ARG29 5.0 194.1 1.0

M.Cipullo, G.Valentin Gese, S.Gopalakrishna, A.Krueger, V.Lobo, M.A.Pirozhkova, J.Marks, P.Palenkova, D.Shiriaev, Y.Liu, J.Misic, Y.Cai, M.Nguyen, A.Abdelbagi, X.Li, M.Minczuk, M.Hafner, D.Benhalevy, A.A.Sarshad, I.Attanasov, B.M.Hallberg, J.Rorbach. GTPBP8 Is Essential For Mitoribosome Formation in Human Mitochondria Nat Commun 2024.
ISSN: ESSN 2041-1723