Iron in PDB 8qrm: Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 3

The structure of Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 3 also contains other interesting chemical elements:

Potassium	(K)	17 atoms
Zinc	(Zn)	1 atom
Magnesium	(Mg)	59 atoms

The binding sites of Iron atom in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 3 (pdb code 8qrm). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 3, PDB code: 8qrm:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 3 within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe201 b:126.9 occ:1.00 FE1 P:FES201 0.0 126.9 1.0 S2 P:FES201 2.2 118.0 1.0 S1 P:FES201 2.2 123.1 1.0 SG P:CYS68 2.3 104.9 1.0 SG E:CYS105 2.3 101.5 1.0 CB E:CYS105 2.6 121.7 1.0 FE2 P:FES201 3.1 118.5 1.0 CB P:CYS68 3.5 105.7 1.0 CA E:CYS105 4.0 123.8 1.0 CA P:CYS68 4.2 106.8 1.0 C E:CYS105 4.4 127.4 1.0 N E:GLY107 4.4 144.3 1.0 SG P:CYS65 4.5 105.3 1.0 CA E:GLY107 4.6 141.2 1.0 O E:CYS105 4.8 122.1 1.0 SG P:CYS100 4.9 105.7 1.0 N E:GLU106 4.9 150.9 1.0 N E:CYS105 4.9 122.5 1.0

Iron binding site 2 out of 4 in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 3 within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe201 b:118.5 occ:1.00 FE2 P:FES201 0.0 118.5 1.0 S1 P:FES201 2.2 123.1 1.0 S2 P:FES201 2.2 118.0 1.0 SG P:CYS65 2.3 105.3 1.0 SG P:CYS100 2.3 105.7 1.0 FE1 P:FES201 3.1 126.9 1.0 CB P:CYS100 3.3 99.0 1.0 CB P:CYS65 3.7 100.0 1.0 CB P:CYS68 4.3 105.7 1.0 CB P:LYS103 4.4 88.3 1.0 N P:CYS65 4.4 101.8 1.0 SG P:CYS68 4.4 104.9 1.0 N P:CYS100 4.4 105.2 1.0 CA P:CYS100 4.5 98.7 1.0 CA P:CYS68 4.5 106.8 1.0 SG E:CYS105 4.6 101.5 1.0 CA P:CYS65 4.7 101.2 1.0 N P:CYS68 4.8 102.9 1.0 CG P:LYS103 4.8 93.9 1.0 CD P:LYS103 4.9 86.6 1.0

Iron binding site 3 out of 4 in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 3 within 5.0Å range: probe atom residue distance (Å) B Occ T:Fe201 b:121.8 occ:1.00 FE1 T:FES201 0.0 121.8 1.0 S2 T:FES201 2.2 115.0 1.0 S1 T:FES201 2.2 85.7 1.0 SG T:CYS149 2.3 101.8 1.0 SG M:CYS26 2.3 104.2 1.0 FE2 T:FES201 3.1 109.8 1.0 CB M:CYS26 3.4 92.7 1.0 CB T:CYS149 3.4 101.7 1.0 N M:CYS26 3.8 88.4 1.0 CA T:CYS149 4.1 98.4 1.0 CA M:CYS26 4.2 88.0 1.0 CD T:PRO150 4.3 89.6 1.0 SG T:CYS141 4.3 104.1 1.0 C M:GLY25 4.7 75.2 1.0 CA M:GLY25 4.8 71.3 1.0 N T:PRO150 4.9 95.0 1.0 C T:CYS149 5.0 102.2 1.0

Iron binding site 4 out of 4 in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 3 within 5.0Å range: probe atom residue distance (Å) B Occ T:Fe201 b:109.8 occ:1.00 FE2 T:FES201 0.0 109.8 1.0 S2 T:FES201 2.2 115.0 1.0 S1 T:FES201 2.2 85.7 1.0 SG T:CYS141 2.3 104.1 1.0 SG T:CYS139 2.3 127.5 1.0 CB T:CYS139 2.7 124.0 1.0 FE1 T:FES201 3.1 121.8 1.0 CB T:CYS141 3.3 102.0 1.0 N T:CYS141 4.2 94.6 1.0 CA T:CYS139 4.2 125.4 1.0 CA T:CYS141 4.4 96.2 1.0 CB T:CYS149 4.5 101.7 1.0 CA M:GLY25 4.6 71.3 1.0 SG T:CYS149 4.6 101.8 1.0 C T:CYS139 4.7 121.6 1.0 N T:ILE140 4.7 103.0 1.0 CA T:CYS149 4.9 98.4 1.0 CG M:ARG29 5.0 72.3 1.0

M.Cipullo, G.Valentin Gese, S.Gopalakrishna, A.Krueger, V.Lobo, M.A.Pirozhkova, J.Marks, P.Palenkova, D.Shiriaev, Y.Liu, J.Misic, Y.Cai, M.Nguyen, A.Abdelbagi, X.Li, M.Minczuk, M.Hafner, D.Benhalevy, A.A.Sarshad, I.Attanasov, B.M.Hallberg, J.Rorbach. GTPBP8 Plays A Role in Mitoribosome Formation in Human Mitochondria Nat Commun 2024.
ISSN: ESSN 2041-1723