Iron in PDB 8qt7: Cryo-Em Structure of Streptococcus Pneumoniae Nadph Oxidase in Complex with Nadph

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of Streptococcus Pneumoniae Nadph Oxidase in Complex with Nadph (pdb code 8qt7). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Cryo-Em Structure of Streptococcus Pneumoniae Nadph Oxidase in Complex with Nadph, PDB code: 8qt7:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8qt7

Go back to Iron Binding Sites List in 8qt7
Iron binding site 1 out of 2 in the Cryo-Em Structure of Streptococcus Pneumoniae Nadph Oxidase in Complex with Nadph


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Streptococcus Pneumoniae Nadph Oxidase in Complex with Nadph within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe503

b:41.6
occ:1.00
FE A:HEM503 0.0 41.6 1.0
ND A:HEM503 1.9 26.9 1.0
NA A:HEM503 2.0 30.0 1.0
NB A:HEM503 2.1 34.5 1.0
NC A:HEM503 2.1 33.9 1.0
NE2 A:HIS83 2.1 14.4 1.0
NE2 A:HIS142 2.2 27.0 1.0
CE1 A:HIS142 2.8 16.1 1.0
C4D A:HEM503 2.9 24.4 1.0
C1D A:HEM503 2.9 20.7 1.0
C1A A:HEM503 2.9 20.9 1.0
C4A A:HEM503 3.0 22.4 1.0
C4C A:HEM503 3.0 27.9 1.0
C4B A:HEM503 3.0 24.8 1.0
CD2 A:HIS83 3.1 14.5 1.0
C1B A:HEM503 3.1 24.9 1.0
CE1 A:HIS83 3.1 17.1 1.0
C1C A:HEM503 3.1 21.0 1.0
CHA A:HEM503 3.3 23.8 1.0
CD2 A:HIS142 3.3 31.0 1.0
CHD A:HEM503 3.4 17.7 1.0
CHB A:HEM503 3.5 28.9 1.0
CHC A:HEM503 3.5 23.7 1.0
ND1 A:HIS142 4.0 22.9 1.0
C2A A:HEM503 4.1 26.6 1.0
C3D A:HEM503 4.1 31.4 1.0
C2D A:HEM503 4.1 30.2 1.0
C3A A:HEM503 4.2 21.0 1.0
ND1 A:HIS83 4.2 34.0 1.0
CG A:HIS83 4.2 24.9 1.0
C3C A:HEM503 4.2 29.1 1.0
C3B A:HEM503 4.3 30.4 1.0
C2C A:HEM503 4.3 29.2 1.0
C2B A:HEM503 4.3 28.5 1.0
CG A:HIS142 4.3 28.1 1.0

Iron binding site 2 out of 2 in 8qt7

Go back to Iron Binding Sites List in 8qt7
Iron binding site 2 out of 2 in the Cryo-Em Structure of Streptococcus Pneumoniae Nadph Oxidase in Complex with Nadph


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Streptococcus Pneumoniae Nadph Oxidase in Complex with Nadph within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe504

b:46.6
occ:1.00
FE A:HEM504 0.0 46.6 1.0
NA A:HEM504 2.0 29.9 1.0
NC A:HEM504 2.1 31.9 1.0
NB A:HEM504 2.1 29.1 1.0
ND A:HEM504 2.1 27.9 1.0
NE2 A:HIS129 2.2 22.0 1.0
NE2 A:HIS69 2.2 25.6 1.0
CD2 A:HIS69 3.0 28.8 1.0
C4A A:HEM504 3.0 27.0 1.0
C1A A:HEM504 3.0 34.0 1.0
C1C A:HEM504 3.1 27.1 1.0
C4B A:HEM504 3.1 20.5 1.0
CD2 A:HIS129 3.1 17.9 1.0
C1D A:HEM504 3.1 25.8 1.0
C1B A:HEM504 3.1 24.4 1.0
C4D A:HEM504 3.1 19.8 1.0
C4C A:HEM504 3.1 26.4 1.0
CE1 A:HIS69 3.2 25.4 1.0
CE1 A:HIS129 3.2 28.9 1.0
CHC A:HEM504 3.4 26.1 1.0
CHB A:HEM504 3.4 26.9 1.0
CHA A:HEM504 3.4 21.2 1.0
CHD A:HEM504 3.4 28.1 1.0
CG A:HIS69 4.2 37.8 1.0
ND1 A:HIS69 4.2 30.9 1.0
C2A A:HEM504 4.2 31.6 1.0
C3A A:HEM504 4.2 31.6 1.0
CG A:HIS129 4.2 27.0 1.0
ND1 A:HIS129 4.3 30.7 1.0
C2C A:HEM504 4.3 35.3 1.0
C2D A:HEM504 4.3 30.9 1.0
C3B A:HEM504 4.3 35.0 1.0
C2B A:HEM504 4.3 35.8 1.0
C3D A:HEM504 4.3 39.4 1.0
C3C A:HEM504 4.3 32.9 1.0
CH2 A:TRP125 4.9 20.2 1.0

Reference:

V.R.A.Dubach, P.San Segundo-Acosta, B.J.Murphy. Structural and Mechanistic Insight Into Streptococcus Pneumoniae Nadph Oxidase To Be Published 2024.
DOI: 10.1038/S41594-024-01348-W
Page generated: Sat Aug 10 15:47:29 2024

Last articles

Zn in 2YRC
Zn in 2YQP
Zn in 2YR2
Zn in 2YQL
Zn in 2YPT
Zn in 2YPA
Zn in 2YPU
Zn in 2YNW
Zn in 2YNT
Zn in 2YNV
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy