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Iron in PDB 8ra3: Multicopy-Refined Carboxymyoglobin Photolysis Time Series at 101 Mj/CM2 Laser Fluence, 462 Fs Time Delay

Protein crystallography data

The structure of Multicopy-Refined Carboxymyoglobin Photolysis Time Series at 101 Mj/CM2 Laser Fluence, 462 Fs Time Delay, PDB code: 8ra3 was solved by T.Barends, I.Schlichting, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 9.96 / 1.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 64.1, 28.8, 35.8, 90, 106.9, 90
R / Rfree (%) 18.6 / 21.7

Iron Binding Sites:

The binding sites of Iron atom in the Multicopy-Refined Carboxymyoglobin Photolysis Time Series at 101 Mj/CM2 Laser Fluence, 462 Fs Time Delay (pdb code 8ra3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Multicopy-Refined Carboxymyoglobin Photolysis Time Series at 101 Mj/CM2 Laser Fluence, 462 Fs Time Delay, PDB code: 8ra3:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8ra3

Go back to Iron Binding Sites List in 8ra3
Iron binding site 1 out of 2 in the Multicopy-Refined Carboxymyoglobin Photolysis Time Series at 101 Mj/CM2 Laser Fluence, 462 Fs Time Delay


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Multicopy-Refined Carboxymyoglobin Photolysis Time Series at 101 Mj/CM2 Laser Fluence, 462 Fs Time Delay within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:10.5
occ:0.22
FE A:HEM201 0.0 10.5 0.2
FE A:HEM201 0.2 11.6 0.8
C A:CMO204 1.7 12.2 0.2
ND A:HEM201 1.9 13.1 0.8
NB A:HEM201 2.0 10.0 0.2
ND A:HEM201 2.0 12.8 0.2
NC A:HEM201 2.0 10.8 0.8
NC A:HEM201 2.0 10.5 0.2
NA A:HEM201 2.0 10.5 0.2
NA A:HEM201 2.1 10.9 0.8
NE2 A:HIS93 2.1 10.1 0.2
NB A:HEM201 2.1 10.3 0.8
NE2 A:HIS93 2.3 10.5 0.8
C1D A:HEM201 2.9 11.9 0.8
O A:CMO204 2.9 17.9 0.2
C4D A:HEM201 2.9 12.7 0.8
C4C A:HEM201 3.0 11.0 0.8
C4C A:HEM201 3.0 10.9 0.2
C1D A:HEM201 3.0 11.2 0.2
C4D A:HEM201 3.0 12.3 0.2
C4B A:HEM201 3.0 9.6 0.2
C1B A:HEM201 3.0 10.5 0.2
C1A A:HEM201 3.0 11.0 0.8
C1C A:HEM201 3.1 10.4 0.2
C1A A:HEM201 3.1 10.9 0.2
C4A A:HEM201 3.1 11.8 0.2
CE1 A:HIS93 3.1 12.2 0.2
C1C A:HEM201 3.1 10.8 0.8
C4B A:HEM201 3.1 10.3 0.8
C1B A:HEM201 3.1 10.7 0.8
CD2 A:HIS93 3.1 9.8 0.2
C4A A:HEM201 3.2 11.2 0.8
CE1 A:HIS93 3.3 12.4 0.8
CHD A:HEM201 3.3 12.4 0.8
CD2 A:HIS93 3.3 10.2 0.8
CHD A:HEM201 3.4 12.3 0.2
CHA A:HEM201 3.4 11.5 0.8
CHB A:HEM201 3.4 10.4 0.2
CHA A:HEM201 3.4 11.2 0.2
CHC A:HEM201 3.4 10.4 0.2
CHC A:HEM201 3.5 10.8 0.8
CHB A:HEM201 3.5 10.7 0.8
C A:CMO204 3.8 13.7 0.8
C2D A:HEM201 4.1 11.8 0.8
C3D A:HEM201 4.2 13.3 0.8
ND1 A:HIS93 4.2 12.7 0.2
C3C A:HEM201 4.2 11.3 0.8
C3C A:HEM201 4.2 11.2 0.2
C2C A:HEM201 4.2 11.7 0.8
C2D A:HEM201 4.2 11.7 0.2
C3D A:HEM201 4.2 12.7 0.2
C2C A:HEM201 4.3 11.4 0.2
CG A:HIS93 4.3 11.0 0.2
C3B A:HEM201 4.3 10.9 0.2
C2B A:HEM201 4.3 10.5 0.2
C2A A:HEM201 4.3 10.7 0.2
C3A A:HEM201 4.3 11.5 0.2
C2A A:HEM201 4.3 11.0 0.8
C3A A:HEM201 4.3 11.5 0.8
C2B A:HEM201 4.3 11.1 0.8
C3B A:HEM201 4.4 11.3 0.8
ND1 A:HIS93 4.4 12.4 0.8
CG A:HIS93 4.5 11.4 0.8
O A:CMO204 4.5 18.9 0.8
NE2 A:HIS64 4.6 17.4 0.8
NE2 A:HIS64 4.6 17.9 0.2
CG2 A:VAL68 4.7 14.1 0.8
CG2 A:VAL68 4.7 14.3 0.2

Iron binding site 2 out of 2 in 8ra3

Go back to Iron Binding Sites List in 8ra3
Iron binding site 2 out of 2 in the Multicopy-Refined Carboxymyoglobin Photolysis Time Series at 101 Mj/CM2 Laser Fluence, 462 Fs Time Delay


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Multicopy-Refined Carboxymyoglobin Photolysis Time Series at 101 Mj/CM2 Laser Fluence, 462 Fs Time Delay within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:11.6
occ:0.78
FE A:HEM201 0.0 11.6 0.8
FE A:HEM201 0.2 10.5 0.2
C A:CMO204 1.9 12.2 0.2
ND A:HEM201 1.9 13.1 0.8
NB A:HEM201 2.0 10.0 0.2
NA A:HEM201 2.0 10.5 0.2
NE2 A:HIS93 2.0 10.1 0.2
NA A:HEM201 2.0 10.9 0.8
ND A:HEM201 2.1 12.8 0.2
NC A:HEM201 2.1 10.5 0.2
NC A:HEM201 2.1 10.8 0.8
NB A:HEM201 2.1 10.3 0.8
NE2 A:HIS93 2.2 10.5 0.8
CE1 A:HIS93 2.9 12.2 0.2
C1D A:HEM201 3.0 11.9 0.8
C4D A:HEM201 3.0 12.7 0.8
C1B A:HEM201 3.0 10.5 0.2
C4A A:HEM201 3.0 11.8 0.2
C4B A:HEM201 3.0 9.6 0.2
C1A A:HEM201 3.0 11.0 0.8
C1A A:HEM201 3.0 10.9 0.2
CD2 A:HIS93 3.0 9.8 0.2
C1B A:HEM201 3.1 10.7 0.8
C4C A:HEM201 3.1 11.0 0.8
O A:CMO204 3.1 17.9 0.2
C4B A:HEM201 3.1 10.3 0.8
C4D A:HEM201 3.1 12.3 0.2
C4A A:HEM201 3.1 11.2 0.8
C1C A:HEM201 3.1 10.4 0.2
C1D A:HEM201 3.1 11.2 0.2
C4C A:HEM201 3.1 10.9 0.2
CE1 A:HIS93 3.1 12.4 0.8
C1C A:HEM201 3.1 10.8 0.8
CD2 A:HIS93 3.2 10.2 0.8
CHB A:HEM201 3.3 10.4 0.2
CHD A:HEM201 3.4 12.4 0.8
CHA A:HEM201 3.4 11.5 0.8
CHA A:HEM201 3.4 11.2 0.2
CHC A:HEM201 3.4 10.4 0.2
CHB A:HEM201 3.5 10.7 0.8
CHD A:HEM201 3.5 12.3 0.2
CHC A:HEM201 3.5 10.8 0.8
C A:CMO204 3.9 13.7 0.8
ND1 A:HIS93 4.0 12.7 0.2
CG A:HIS93 4.1 11.0 0.2
C2B A:HEM201 4.2 10.5 0.2
C3A A:HEM201 4.2 11.5 0.2
C3B A:HEM201 4.2 10.9 0.2
C2D A:HEM201 4.2 11.8 0.8
C2A A:HEM201 4.2 10.7 0.2
C3D A:HEM201 4.2 13.3 0.8
C2A A:HEM201 4.2 11.0 0.8
ND1 A:HIS93 4.2 12.4 0.8
C3A A:HEM201 4.3 11.5 0.8
C2B A:HEM201 4.3 11.1 0.8
C3C A:HEM201 4.3 11.3 0.8
C2C A:HEM201 4.3 11.7 0.8
C3D A:HEM201 4.3 12.7 0.2
C2D A:HEM201 4.3 11.7 0.2
C3C A:HEM201 4.3 11.2 0.2
C2C A:HEM201 4.3 11.4 0.2
C3B A:HEM201 4.3 11.3 0.8
CG A:HIS93 4.3 11.4 0.8
O A:CMO204 4.6 18.9 0.8
NE2 A:HIS64 4.7 17.4 0.8
NE2 A:HIS64 4.7 17.9 0.2
CG2 A:VAL68 4.8 14.1 0.8
CG2 A:VAL68 4.8 14.3 0.2

Reference:

T.Barends, I.Schlichting. Influence of Pump Laser Fluence on Ultrafast Dynamics in Myoglobin To Be Published.
Page generated: Sat Aug 10 16:31:26 2024

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