Atomistry » Iron » PDB 8r9f-8rgq » 8rgp
Atomistry »
  Iron »
    PDB 8r9f-8rgq »
      8rgp »

Iron in PDB 8rgp: Closed Complex I From Murine Brain

Enzymatic activity of Closed Complex I From Murine Brain

All present enzymatic activity of Closed Complex I From Murine Brain:
7.1.1.2;

Other elements in 8rgp:

The structure of Closed Complex I From Murine Brain also contains other interesting chemical elements:

Potassium (K) 1 atom
Zinc (Zn) 1 atom
Magnesium (Mg) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Closed Complex I From Murine Brain (pdb code 8rgp). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Closed Complex I From Murine Brain, PDB code: 8rgp:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 8rgp

Go back to Iron Binding Sites List in 8rgp
Iron binding site 1 out of 28 in the Closed Complex I From Murine Brain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Closed Complex I From Murine Brain within 5.0Å range:
probe atom residue distance (Å) B Occ
6:Fe201

b:74.7
occ:1.00
 FE1 6:SF4201 0.0 74.7 1.0
S2 6:SF4201 2.3 76.0 1.0
S3 6:SF4201 2.3 86.4 1.0
S4 6:SF4201 2.3 74.3 1.0
SG 6:CYS129 2.3 60.3 1.0
FE4 6:SF4201 2.6 76.9 1.0
FE3 6:SF4201 2.7 73.0 1.0
FE2 6:SF4201 2.7 77.9 1.0
CB 6:CYS129 3.2 61.7 1.0
S1 6:SF4201 3.9 84.1 1.0
OG1 6:THR101 4.0 46.2 1.0
N 6:CYS129 4.0 58.3 1.0
CA 6:CYS129 4.2 55.3 1.0
CQ1 D:2MR85 4.5 66.7 1.0
SG 6:CYS159 4.7 58.1 1.0
CE2 6:TYR136 4.7 49.7 1.0
SG 6:CYS65 4.9 76.3 1.0
SG 6:CYS64 4.9 66.3 1.0
N 6:THR101 5.0 45.6 1.0

Iron binding site 2 out of 28 in 8rgp

Go back to Iron Binding Sites List in 8rgp
Iron binding site 2 out of 28 in the Closed Complex I From Murine Brain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Closed Complex I From Murine Brain within 5.0Å range:
probe atom residue distance (Å) B Occ
6:Fe201

b:77.9
occ:1.00
 FE2 6:SF4201 0.0 77.9 1.0
S1 6:SF4201 2.3 84.1 1.0
S4 6:SF4201 2.3 74.3 1.0
S3 6:SF4201 2.3 86.4 1.0
SG 6:CYS65 2.3 76.3 1.0
FE3 6:SF4201 2.7 73.0 1.0
FE4 6:SF4201 2.7 76.9 1.0
FE1 6:SF4201 2.7 74.7 1.0
CB 6:CYS65 3.4 66.1 1.0
N 6:CYS65 3.8 57.3 1.0
S2 6:SF4201 3.9 76.0 1.0
CA 6:CYS65 4.0 59.9 1.0
CA 6:GLY127 4.4 44.8 1.0
CA 6:PRO160 4.5 48.6 1.0
CB 6:PRO160 4.6 47.2 1.0
SG 6:CYS64 4.6 66.3 1.0
CA 6:CYS159 4.7 48.0 1.0
C 6:CYS64 4.7 59.0 1.0
SG 6:CYS159 4.8 58.1 1.0
N 6:SER128 4.8 47.6 1.0
SG 6:CYS129 4.8 60.3 1.0
CB 6:CYS64 4.8 69.2 1.0
N 6:PRO160 4.9 49.3 1.0
O 6:MET126 5.0 45.1 1.0
C 6:GLY127 5.0 52.0 1.0

Iron binding site 3 out of 28 in 8rgp

Go back to Iron Binding Sites List in 8rgp
Iron binding site 3 out of 28 in the Closed Complex I From Murine Brain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Closed Complex I From Murine Brain within 5.0Å range:
probe atom residue distance (Å) B Occ
6:Fe201

b:73.0
occ:1.00
 FE3 6:SF4201 0.0 73.0 1.0
S1 6:SF4201 2.3 84.1 1.0
S4 6:SF4201 2.3 74.3 1.0
S2 6:SF4201 2.3 76.0 1.0
SG 6:CYS64 2.3 66.3 1.0
FE2 6:SF4201 2.7 77.9 1.0
FE1 6:SF4201 2.7 74.7 1.0
FE4 6:SF4201 2.7 76.9 1.0
CB 6:CYS64 3.3 69.2 1.0
NE2 D:HIS190 3.6 73.1 1.0
S3 6:SF4201 3.9 86.4 1.0
N 6:CYS64 4.1 56.8 1.0
N 6:CYS65 4.1 57.3 1.0
CA 6:CYS64 4.2 45.1 1.0
CQ1 D:2MR85 4.3 66.7 1.0
CD2 D:HIS190 4.3 80.8 1.0
CB 6:ALA63 4.5 62.0 1.0
CG D:ARG105 4.5 56.1 1.0
C 6:CYS64 4.5 59.0 1.0
CE1 D:HIS190 4.6 58.6 1.0
SG 6:CYS65 4.7 76.3 1.0
SG 6:CYS129 4.9 60.3 1.0
SG 6:CYS159 4.9 58.1 1.0
NH1 D:2MR85 4.9 57.9 1.0

Iron binding site 4 out of 28 in 8rgp

Go back to Iron Binding Sites List in 8rgp
Iron binding site 4 out of 28 in the Closed Complex I From Murine Brain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Closed Complex I From Murine Brain within 5.0Å range:
probe atom residue distance (Å) B Occ
6:Fe201

b:76.9
occ:1.00
 FE4 6:SF4201 0.0 76.9 1.0
S1 6:SF4201 2.3 84.1 1.0
S2 6:SF4201 2.3 76.0 1.0
S3 6:SF4201 2.3 86.4 1.0
SG 6:CYS159 2.3 58.1 1.0
FE1 6:SF4201 2.6 74.7 1.0
FE2 6:SF4201 2.7 77.9 1.0
FE3 6:SF4201 2.7 73.0 1.0
CB 6:CYS159 3.3 47.3 1.0
CA 6:CYS159 3.6 48.0 1.0
S4 6:SF4201 3.9 74.3 1.0
C 6:CYS159 4.0 51.2 1.0
CD2 D:HIS190 4.0 80.8 1.0
NE D:ARG105 4.1 57.7 1.0
NE2 D:HIS190 4.2 73.1 1.0
N 6:PRO160 4.4 49.3 1.0
O 6:CYS159 4.5 73.9 1.0
SG 6:CYS129 4.7 60.3 1.0
NH2 D:ARG105 4.7 50.0 1.0
CA 6:PRO160 4.8 48.6 1.0
CD D:ARG105 4.8 56.4 1.0
SG 6:CYS65 4.8 76.3 1.0
SG 6:CYS64 4.8 66.3 1.0
CZ D:ARG105 4.9 54.6 1.0
CG D:ARG105 4.9 56.1 1.0
N 6:CYS159 5.0 58.4 1.0

Iron binding site 5 out of 28 in 8rgp

Go back to Iron Binding Sites List in 8rgp
Iron binding site 5 out of 28 in the Closed Complex I From Murine Brain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Closed Complex I From Murine Brain within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Fe301

b:61.8
occ:1.00
 FE1 2:FES301 0.0 61.8 1.0
S2 2:FES301 2.2 72.1 1.0
S1 2:FES301 2.2 77.2 1.0
SG 2:CYS103 2.3 70.0 1.0
SG 2:CYS108 2.3 74.2 1.0
FE2 2:FES301 2.7 70.7 1.0
CB 2:CYS103 3.5 61.2 1.0
CA 2:CYS144 3.7 52.5 1.0
CB 2:CYS108 3.8 73.0 1.0
OG1 2:THR105 3.9 77.1 1.0
N 2:LEU145 4.1 56.4 1.0
CB 2:CYS144 4.1 60.4 1.0
C 2:CYS144 4.5 56.6 1.0
SG 2:CYS144 4.5 67.8 1.0
CB 2:THR105 4.5 79.0 1.0
SG 2:CYS148 4.5 81.4 1.0
O 2:ALA147 4.6 75.9 1.0
N 2:CYS144 4.6 59.2 1.0
N 2:CYS108 4.6 71.3 1.0
O 2:GLU143 4.8 77.6 1.0
N 2:THR105 4.8 81.4 1.0
CA 2:CYS108 4.8 67.3 1.0
CA 2:CYS103 4.8 65.1 1.0
CA 2:CYS148 4.9 74.9 1.0
SD 2:MET153 4.9 100.5 1.0
CB 2:CYS148 4.9 64.1 1.0
CG 2:MET153 5.0 92.5 1.0
CG 2:PRO107 5.0 60.4 1.0
C 2:CYS103 5.0 66.2 1.0

Iron binding site 6 out of 28 in 8rgp

Go back to Iron Binding Sites List in 8rgp
Iron binding site 6 out of 28 in the Closed Complex I From Murine Brain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Closed Complex I From Murine Brain within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Fe301

b:70.7
occ:1.00
 FE2 2:FES301 0.0 70.7 1.0
S2 2:FES301 2.2 72.1 1.0
S1 2:FES301 2.2 77.2 1.0
SG 2:CYS148 2.3 81.4 1.0
SG 2:CYS144 2.3 67.8 1.0
FE1 2:FES301 2.7 61.8 1.0
CB 2:CYS144 3.0 60.4 1.0
CA 2:CYS144 3.4 52.5 1.0
CB 2:CYS148 3.6 64.1 1.0
N 2:GLY146 3.7 49.4 1.0
N 2:LEU145 3.7 56.4 1.0
C 2:CYS144 3.9 56.6 1.0
CA 2:CYS148 4.1 74.9 1.0
N 2:CYS148 4.1 80.8 1.0
N 1:GLY103 4.3 65.4 1.0
CA 2:GLY146 4.3 61.0 1.0
N 2:ALA147 4.3 70.2 1.0
CA 1:PRO102 4.4 68.1 1.0
C 2:ALA147 4.4 77.2 1.0
C 2:GLY146 4.5 74.9 1.0
SG 2:CYS103 4.6 70.0 1.0
O 2:ALA147 4.6 75.9 1.0
SG 2:CYS108 4.6 74.2 1.0
C 2:LEU145 4.7 64.4 1.0
N 2:CYS144 4.8 59.2 1.0
CA 2:LEU145 4.8 64.1 1.0
C 1:PRO102 4.9 60.6 1.0
CG 2:PRO107 4.9 60.4 1.0
O 2:CYS144 4.9 68.2 1.0

Iron binding site 7 out of 28 in 8rgp

Go back to Iron Binding Sites List in 8rgp
Iron binding site 7 out of 28 in the Closed Complex I From Murine Brain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Closed Complex I From Murine Brain within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe502

b:65.8
occ:1.00
 FE1 1:SF4502 0.0 65.8 1.0
S3 1:SF4502 2.3 72.8 1.0
S2 1:SF4502 2.3 66.8 1.0
S4 1:SF4502 2.3 100.2 1.0
SG 1:CYS365 2.3 60.5 1.0
FE3 1:SF4502 2.6 91.0 1.0
FE4 1:SF4502 2.7 86.9 1.0
FE2 1:SF4502 2.7 96.2 1.0
CB 1:CYS365 2.9 70.4 1.0
OG 1:SER358 3.7 66.7 1.0
S1 1:SF4502 3.9 98.7 1.0
CD2 1:LEU407 4.3 76.8 1.0
CA 1:CYS365 4.4 64.4 1.0
N 1:CYS359 4.4 51.7 1.0
CB 1:LEU407 4.6 60.8 1.0
CB 1:SER358 4.7 61.0 1.0
N 1:GLY360 4.7 52.3 1.0
SG 1:CYS362 4.7 90.2 1.0
C 1:CYS365 4.7 54.4 1.0
N 1:ARG366 4.8 55.2 1.0
SG 1:CYS405 4.8 78.5 1.0
SG 1:CYS359 4.8 66.3 1.0
CA 1:SER358 4.9 49.4 1.0
CG 1:LEU407 4.9 63.0 1.0
N 1:CYS362 4.9 70.0 1.0
CB 1:CYS362 4.9 66.8 1.0

Iron binding site 8 out of 28 in 8rgp

Go back to Iron Binding Sites List in 8rgp
Iron binding site 8 out of 28 in the Closed Complex I From Murine Brain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Closed Complex I From Murine Brain within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe502

b:96.2
occ:1.00
 FE2 1:SF4502 0.0 96.2 1.0
S4 1:SF4502 2.3 100.2 1.0
S1 1:SF4502 2.3 98.7 1.0
S3 1:SF4502 2.3 72.8 1.0
SG 1:CYS405 2.3 78.5 1.0
FE4 1:SF4502 2.7 86.9 1.0
FE1 1:SF4502 2.7 65.8 1.0
FE3 1:SF4502 2.7 91.0 1.0
CB 1:CYS405 3.4 61.2 1.0
S2 1:SF4502 3.9 66.8 1.0
N 1:CYS405 4.0 49.1 1.0
CB 1:LEU407 4.0 60.8 1.0
CA 1:CYS405 4.1 51.8 1.0
CD1 1:ILE185 4.2 59.0 1.0
CG 1:PRO203 4.3 43.9 1.0
C 1:CYS405 4.4 56.1 1.0
O 1:CYS405 4.5 60.4 1.0
N 1:LEU407 4.6 55.3 1.0
CD 1:PRO203 4.6 44.5 1.0
SG 1:CYS359 4.8 66.3 1.0
SG 1:CYS365 4.8 60.5 1.0
SG 1:CYS362 4.8 90.2 1.0
CA 1:LEU407 4.9 60.7 1.0
CG1 1:ILE185 4.9 61.5 1.0

Iron binding site 9 out of 28 in 8rgp

Go back to Iron Binding Sites List in 8rgp
Iron binding site 9 out of 28 in the Closed Complex I From Murine Brain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Closed Complex I From Murine Brain within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe502

b:91.0
occ:1.00
 FE3 1:SF4502 0.0 91.0 1.0
S1 1:SF4502 2.3 98.7 1.0
S4 1:SF4502 2.3 100.2 1.0
S2 1:SF4502 2.3 66.8 1.0
SG 1:CYS362 2.3 90.2 1.0
FE1 1:SF4502 2.6 65.8 1.0
FE4 1:SF4502 2.7 86.9 1.0
FE2 1:SF4502 2.7 96.2 1.0
CB 1:CYS362 3.3 66.8 1.0
N 1:CYS362 3.5 70.0 1.0
S3 1:SF4502 3.9 72.8 1.0
CA 1:CYS362 4.0 62.8 1.0
CB 1:CYS365 4.2 70.4 1.0
N 1:ILE404 4.3 46.9 1.0
CB 1:ILE404 4.4 45.4 1.0
CB 1:GLN361 4.4 37.1 1.0
SG 1:CYS365 4.6 60.5 1.0
C 1:GLN361 4.6 61.6 1.0
N 1:CYS405 4.6 49.1 1.0
CB 1:THR403 4.6 55.3 1.0
N 1:GLN361 4.7 60.2 1.0
CA 1:GLN361 4.8 50.4 1.0
SG 1:CYS359 4.8 66.3 1.0
SG 1:CYS405 4.8 78.5 1.0
CA 1:ILE404 4.9 41.4 1.0
CG1 1:ILE404 4.9 48.2 1.0
O 1:CYS362 4.9 86.5 1.0
CD1 1:ILE404 4.9 50.9 1.0
C 1:CYS362 5.0 75.4 1.0

Iron binding site 10 out of 28 in 8rgp

Go back to Iron Binding Sites List in 8rgp
Iron binding site 10 out of 28 in the Closed Complex I From Murine Brain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Closed Complex I From Murine Brain within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe502

b:86.9
occ:1.00
 FE4 1:SF4502 0.0 86.9 1.0
S2 1:SF4502 2.3 66.8 1.0
S1 1:SF4502 2.3 98.7 1.0
S3 1:SF4502 2.3 72.8 1.0
SG 1:CYS359 2.3 66.3 1.0
FE2 1:SF4502 2.7 96.2 1.0
FE1 1:SF4502 2.7 65.8 1.0
FE3 1:SF4502 2.7 91.0 1.0
CB 1:CYS359 3.3 47.6 1.0
N 1:GLN361 3.8 60.2 1.0
N 1:CYS359 3.8 51.7 1.0
S4 1:SF4502 3.9 100.2 1.0
N 1:GLY360 3.9 52.3 1.0
CA 1:CYS359 3.9 51.4 1.0
CB 1:GLN361 4.0 37.1 1.0
C 1:CYS359 4.1 48.6 1.0
CD 1:PRO203 4.2 44.5 1.0
CA 1:GLN361 4.5 50.4 1.0
N 1:CYS362 4.6 70.0 1.0
NE2 1:GLN361 4.7 53.5 1.0
CG 1:PRO203 4.7 43.9 1.0
CG1 1:ILE185 4.7 61.5 1.0
SG 1:CYS405 4.8 78.5 1.0
SG 1:CYS362 4.8 90.2 1.0
C 1:GLY360 4.8 67.9 1.0
SG 1:CYS365 4.9 60.5 1.0
CA 1:GLY360 4.9 67.5 1.0
CD1 1:ILE185 4.9 59.0 1.0
OG 1:SER358 4.9 66.7 1.0
O 1:CYS359 5.0 54.8 1.0

Reference:

I.Vercellino, L.A.Sazanov. SCAF1 Drives the Compositional Diversity of Mammalian Respirasomes. Nat.Struct.Mol.Biol. 2024.
ISSN: ESSN 1545-9985
PubMed: 38575788
DOI: 10.1038/S41594-024-01255-0
Page generated: Sat Aug 10 17:06:50 2024

Last articles

Mg in 4Y52
Mg in 4Y30
Mg in 4Y2V
Mg in 4Y2X
Mg in 4Y2Y
Mg in 4Y2U
Mg in 4Y2T
Mg in 4Y2Q
Mg in 4Y2R
Mg in 4Y2S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy