Iron in PDB 8riu: Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum

All present enzymatic activity of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum:
1.2.7.4;

The structure of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum, PDB code: 8riu was solved by O.N.Lemaire, T.Wagner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.80 / 1.89
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	97.07, 159.213, 191.444, 90, 90, 90
R / Rfree (%)	16.5 / 18.7

The structure of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Potassium	(K)	2 atoms
Nickel	(Ni)	2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60;

Binding sites:

The binding sites of Iron atom in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum (pdb code 8riu). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 60 binding sites of Iron where determined in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum, PDB code: 8riu:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 60 in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe809 b:29.6 occ:1.00 FE1 A:SF4809 0.0 29.6 1.0 S3 A:SF4809 2.3 31.3 1.0 SG A:CYS68 2.3 31.7 1.0 S4 A:SF4809 2.3 28.2 1.0 S2 A:SF4809 2.3 30.2 1.0 FE3 A:SF4809 2.6 29.3 1.0 FE2 A:SF4809 2.7 29.8 1.0 FE4 A:SF4809 2.7 30.9 1.0 CB A:CYS68 3.1 28.8 1.0 NH2 A:ARG96 3.6 35.9 1.0 S1 A:SF4809 3.8 32.4 1.0 N A:PHE70 4.2 29.7 1.0 C A:CYS68 4.3 26.4 1.0 CA A:CYS68 4.3 26.5 1.0 O A:CYS68 4.3 26.0 1.0 CB A:PHE70 4.4 29.8 1.0 N A:CYS71 4.6 34.5 1.0 SG A:CYS76 4.7 30.4 1.0 N A:CYS69 4.7 29.1 1.0 CA A:PHE70 4.7 33.2 1.0 OE1 A:GLN93 4.8 30.6 1.0 SG A:CYS86 4.8 33.1 1.0 CG A:PHE70 4.9 35.7 1.0 SG A:CYS71 4.9 35.7 1.0 CZ A:ARG96 4.9 34.9 1.0

Iron binding site 2 out of 60 in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe809 b:29.8 occ:1.00 FE2 A:SF4809 0.0 29.8 1.0 S1 A:SF4809 2.3 32.4 1.0 S3 A:SF4809 2.3 31.3 1.0 S4 A:SF4809 2.3 28.2 1.0 SG A:CYS71 2.3 35.7 1.0 FE1 A:SF4809 2.7 29.6 1.0 FE3 A:SF4809 2.7 29.3 1.0 FE4 A:SF4809 2.7 30.9 1.0 CB A:CYS71 3.0 33.8 1.0 N A:CYS71 3.6 34.5 1.0 CA A:CYS71 3.8 31.8 1.0 S2 A:SF4809 3.9 30.2 1.0 O A:CYS71 4.2 32.3 1.0 C A:CYS71 4.3 29.7 1.0 OG1 A:THR176 4.4 30.6 1.0 N A:GLY74 4.5 30.5 1.0 CG2 A:THR176 4.5 33.4 1.0 C A:PHE70 4.5 33.0 1.0 SG A:CYS86 4.7 33.1 1.0 CB A:PHE73 4.7 33.3 1.0 SG A:CYS76 4.7 30.4 1.0 SG A:CYS68 4.7 31.7 1.0 N A:PHE70 5.0 29.7 1.0 CB A:CYS86 5.0 30.1 1.0

Iron binding site 3 out of 60 in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe809 b:29.3 occ:1.00 FE3 A:SF4809 0.0 29.3 1.0 S1 A:SF4809 2.3 32.4 1.0 S2 A:SF4809 2.3 30.2 1.0 S4 A:SF4809 2.3 28.2 1.0 SG A:CYS76 2.3 30.4 1.0 FE1 A:SF4809 2.6 29.6 1.0 FE4 A:SF4809 2.6 30.9 1.0 FE2 A:SF4809 2.7 29.8 1.0 CB A:CYS76 3.3 30.4 1.0 S3 A:SF4809 3.8 31.3 1.0 N A:ALA85 4.0 32.0 1.0 N A:CYS76 4.4 30.0 1.0 CA A:GLY74 4.4 31.4 1.0 CB A:CYS68 4.4 28.8 1.0 CA A:CYS76 4.5 31.1 1.0 CB A:ALA85 4.5 34.1 1.0 N A:GLY74 4.5 30.5 1.0 CA A:GLY84 4.5 35.2 1.0 SG A:CYS68 4.5 31.7 1.0 SG A:CYS71 4.5 35.7 1.0 O A:CYS68 4.6 26.0 1.0 SG A:CYS86 4.6 33.1 1.0 C A:GLY84 4.7 34.9 1.0 CA A:ALA85 4.7 35.9 1.0 N A:CYS86 4.8 34.0 1.0

Iron binding site 4 out of 60 in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe809 b:30.9 occ:1.00 FE4 A:SF4809 0.0 30.9 1.0 SG A:CYS86 2.3 33.1 1.0 S1 A:SF4809 2.3 32.4 1.0 S2 A:SF4809 2.3 30.2 1.0 S3 A:SF4809 2.3 31.3 1.0 FE3 A:SF4809 2.6 29.3 1.0 FE1 A:SF4809 2.7 29.6 1.0 FE2 A:SF4809 2.7 29.8 1.0 CB A:CYS86 3.3 30.1 1.0 N A:CYS86 3.9 34.0 1.0 S4 A:SF4809 3.9 28.2 1.0 CA A:CYS86 4.2 31.6 1.0 NH2 A:ARG96 4.3 35.9 1.0 CG2 A:THR176 4.4 33.4 1.0 N A:ALA85 4.6 32.0 1.0 SG A:CYS76 4.7 30.4 1.0 SG A:CYS71 4.7 35.7 1.0 O A:HOH921 4.7 32.5 1.0 SG A:CYS68 4.8 31.7 1.0 CA A:GLY84 4.8 35.2 1.0 C A:GLY84 4.9 34.9 1.0 C A:ALA85 4.9 32.0 1.0

Iron binding site 5 out of 60 in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe810 b:29.3 occ:1.00 FE1 A:SF4810 0.0 29.3 1.0 S3 A:SF4810 2.3 30.0 1.0 SG A:CYS412 2.3 29.1 1.0 S4 A:SF4810 2.3 29.5 1.0 S2 A:SF4810 2.3 28.4 1.0 FE4 A:SF4810 2.6 29.5 1.0 FE3 A:SF4810 2.7 29.4 1.0 FE2 A:SF4810 2.7 30.1 1.0 CB A:CYS412 3.2 29.7 1.0 CA A:CYS412 3.9 31.4 1.0 S1 A:SF4810 3.9 28.0 1.0 CD A:PRO413 4.0 32.5 1.0 CD1 A:LEU416 4.5 32.3 1.0 C A:CYS412 4.6 29.5 1.0 CG A:LEU416 4.6 31.1 1.0 N A:PRO413 4.6 30.4 1.0 SG A:CYS443 4.7 30.4 1.0 SG A:CYS446 4.7 27.7 1.0 CD1 A:ILE418 4.8 29.9 1.0 CB A:CYS446 4.8 28.2 1.0 CG A:PRO413 4.8 28.6 1.0 CB A:LEU416 4.8 30.7 1.0 SG A:CYS440 4.9 32.6 1.0

Iron binding site 6 out of 60 in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe810 b:30.1 occ:1.00 FE2 A:SF4810 0.0 30.1 1.0 SG A:CYS443 2.3 30.4 1.0 S4 A:SF4810 2.3 29.5 1.0 S1 A:SF4810 2.3 28.0 1.0 S3 A:SF4810 2.3 30.0 1.0 FE3 A:SF4810 2.7 29.4 1.0 FE4 A:SF4810 2.7 29.5 1.0 FE1 A:SF4810 2.7 29.3 1.0 CB A:CYS443 3.6 27.9 1.0 N A:CYS443 3.6 30.1 1.0 N A:GLY444 3.7 31.0 1.0 CD A:PRO413 3.9 32.5 1.0 S2 A:SF4810 3.9 28.4 1.0 CA A:CYS443 4.0 30.2 1.0 C A:CYS443 4.2 28.6 1.0 N A:ARG445 4.3 30.6 1.0 CG A:PRO413 4.4 28.6 1.0 SG A:CYS440 4.5 32.6 1.0 SG A:CYS446 4.6 27.7 1.0 SG A:CYS412 4.6 29.1 1.0 N A:GLY442 4.6 29.5 1.0 CA A:GLY444 4.7 36.2 1.0 C A:GLY442 4.7 29.4 1.0 CG2 A:VAL441 4.8 31.9 1.0 N A:CYS446 4.9 26.8 1.0 C A:GLY444 4.9 30.2 1.0 N A:VAL441 5.0 28.6 1.0

Iron binding site 7 out of 60 in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe810 b:29.4 occ:1.00 FE3 A:SF4810 0.0 29.4 1.0 S4 A:SF4810 2.3 29.5 1.0 S1 A:SF4810 2.3 28.0 1.0 SG A:CYS440 2.3 32.6 1.0 S2 A:SF4810 2.3 28.4 1.0 FE2 A:SF4810 2.7 30.1 1.0 FE4 A:SF4810 2.7 29.5 1.0 FE1 A:SF4810 2.7 29.3 1.0 CB A:CYS440 3.2 29.1 1.0 CA A:CYS440 3.7 28.7 1.0 S3 A:SF4810 3.8 30.0 1.0 N A:VAL441 4.0 28.6 1.0 N A:GLY442 4.1 29.5 1.0 C A:CYS440 4.3 29.7 1.0 N A:CYS443 4.7 30.1 1.0 CA A:GLY442 4.8 30.9 1.0 SG A:CYS412 4.8 29.1 1.0 SG A:CYS446 4.8 27.7 1.0 CD1 A:LEU416 4.8 32.3 1.0 SG A:CYS443 4.9 30.4 1.0 C A:VAL441 5.0 31.1 1.0 N A:CYS440 5.0 31.2 1.0

Iron binding site 8 out of 60 in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe810 b:29.5 occ:1.00 FE4 A:SF4810 0.0 29.5 1.0 S3 A:SF4810 2.2 30.0 1.0 S2 A:SF4810 2.3 28.4 1.0 S1 A:SF4810 2.3 28.0 1.0 SG A:CYS446 2.3 27.7 1.0 FE1 A:SF4810 2.6 29.3 1.0 FE3 A:SF4810 2.7 29.4 1.0 FE2 A:SF4810 2.7 30.1 1.0 CB A:CYS446 3.1 28.2 1.0 S4 A:SF4810 3.9 29.5 1.0 N A:CYS446 4.0 26.8 1.0 CA A:CYS446 4.2 30.2 1.0 CG2 A:VAL457 4.5 28.5 1.0 SG A:CYS443 4.6 30.4 1.0 N A:GLY444 4.6 31.0 1.0 SG A:CYS440 4.7 32.6 1.0 N A:ARG445 4.7 30.6 1.0 CD1 A:ILE418 4.7 29.9 1.0 SG A:CYS412 4.7 29.1 1.0 CG2 A:ILE456 4.8 29.7 1.0 CB A:CYS412 4.9 29.7 1.0 CA A:GLY444 4.9 36.2 1.0 C A:GLY444 5.0 30.2 1.0

Iron binding site 9 out of 60 in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe811 b:30.4 occ:1.00 FE1 A:SF4811 0.0 30.4 1.0 SG A:CYS401 2.3 33.0 1.0 S3 A:SF4811 2.3 28.8 1.0 S2 A:SF4811 2.3 30.9 1.0 S4 A:SF4811 2.3 31.5 1.0 FE2 A:SF4811 2.7 30.3 1.0 FE3 A:SF4811 2.7 31.5 1.0 FE4 A:SF4811 2.7 29.4 1.0 CB A:CYS401 3.3 30.6 1.0 CA A:CYS401 3.7 32.5 1.0 N A:GLN402 3.8 31.7 1.0 S1 A:SF4811 3.9 31.8 1.0 N A:ASN403 4.0 31.2 1.0 ND2 A:ASN422 4.0 31.5 1.0 C A:CYS401 4.2 32.4 1.0 CD1 A:ILE454 4.4 36.6 1.0 CA A:GLY419 4.6 34.8 1.0 SG A:CYS404 4.6 34.1 1.0 N A:CYS404 4.7 35.6 1.0 CA A:ASN403 4.7 36.5 1.0 SG A:CYS450 4.8 33.1 1.0 SG A:CYS408 4.8 32.6 1.0 C A:GLN402 4.8 32.9 1.0 CA A:GLN402 4.9 33.7 1.0

Iron binding site 10 out of 60 in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe811 b:30.3 occ:1.00 FE2 A:SF4811 0.0 30.3 1.0 S4 A:SF4811 2.3 31.5 1.0 S1 A:SF4811 2.3 31.8 1.0 S3 A:SF4811 2.3 28.8 1.0 SG A:CYS404 2.3 34.1 1.0 FE4 A:SF4811 2.7 29.4 1.0 FE3 A:SF4811 2.7 31.5 1.0 FE1 A:SF4811 2.7 30.4 1.0 CB A:CYS404 3.2 30.2 1.0 O E:HOH507 3.5 27.9 1.0 N A:CYS404 3.7 35.6 1.0 S2 A:SF4811 3.9 30.9 1.0 CA A:CYS404 4.1 35.5 1.0 N A:ASN403 4.6 31.2 1.0 N A:GLN402 4.6 31.7 1.0 O A:HOH1141 4.6 30.5 1.0 SG A:CYS401 4.6 33.0 1.0 SG A:CYS408 4.6 32.6 1.0 CB A:ASN407 4.6 35.9 1.0 SG A:CYS450 4.7 33.1 1.0 ND2 A:ASN407 4.7 33.3 1.0 C A:ASN403 4.9 31.7 1.0 CB A:GLN402 4.9 32.7 1.0 C A:GLN402 4.9 32.9 1.0

O.N.Lemaire, G.Wegener, T.Wagner. F420 Reduction As A Cellular Driver For Anaerobic Ethanotrophy To Be Published.