Iron in PDB 8rvu: Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure)
Enzymatic activity of Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure)
All present enzymatic activity of Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure):
1.2.1.2;
1.8.98.5;
Iron Binding Sites:
Iron binding site 1 out
of 90 in 8rvu
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Iron Binding Sites List in 8rvu
Iron binding site 1 out
of 90 in the Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe401
b:42.3
occ:1.00
|
FE1
|
E:SF4401
|
0.0
|
42.3
|
1.0
|
S4
|
E:SF4401
|
2.3
|
27.9
|
1.0
|
S2
|
E:SF4401
|
2.3
|
26.3
|
1.0
|
S3
|
E:SF4401
|
2.3
|
25.2
|
1.0
|
SG
|
E:CYS340
|
2.3
|
31.2
|
1.0
|
FE3
|
E:SF4401
|
2.7
|
42.7
|
1.0
|
FE4
|
E:SF4401
|
2.7
|
44.7
|
1.0
|
FE2
|
E:SF4401
|
2.7
|
48.7
|
1.0
|
HD2
|
E:PRO341
|
3.1
|
36.4
|
1.0
|
HD12
|
E:ILE344
|
3.2
|
37.0
|
1.0
|
HD11
|
E:ILE346
|
3.3
|
35.2
|
1.0
|
HA
|
E:CYS340
|
3.4
|
35.4
|
1.0
|
CB
|
E:CYS340
|
3.5
|
22.1
|
1.0
|
HB2
|
E:CYS340
|
3.5
|
32.8
|
1.0
|
H
|
E:MET342
|
3.8
|
40.7
|
1.0
|
HB2
|
E:MET342
|
3.8
|
41.5
|
1.0
|
S1
|
E:SF4401
|
3.9
|
22.9
|
1.0
|
CD
|
E:PRO341
|
3.9
|
27.6
|
1.0
|
CA
|
E:CYS340
|
3.9
|
35.2
|
1.0
|
HD3
|
E:PRO341
|
4.0
|
34.7
|
1.0
|
CD1
|
E:ILE344
|
4.1
|
27.5
|
1.0
|
HB
|
E:ILE344
|
4.1
|
36.4
|
1.0
|
CD1
|
E:ILE346
|
4.2
|
30.1
|
1.0
|
HB3
|
E:CYS340
|
4.3
|
33.4
|
1.0
|
HD13
|
E:ILE346
|
4.3
|
34.8
|
1.0
|
N
|
E:PRO341
|
4.4
|
35.1
|
1.0
|
HD11
|
E:ILE344
|
4.5
|
35.3
|
1.0
|
C
|
E:CYS340
|
4.5
|
31.5
|
1.0
|
HA
|
E:CYS280
|
4.5
|
41.0
|
1.0
|
HB3
|
E:CYS286
|
4.6
|
32.4
|
1.0
|
HD12
|
E:ILE346
|
4.6
|
35.3
|
1.0
|
HD13
|
E:ILE344
|
4.6
|
34.7
|
1.0
|
N
|
E:MET342
|
4.6
|
40.3
|
1.0
|
SG
|
E:CYS283
|
4.7
|
39.0
|
1.0
|
SG
|
E:CYS286
|
4.7
|
36.7
|
1.0
|
H
|
E:CYS286
|
4.7
|
35.6
|
1.0
|
CB
|
E:MET342
|
4.8
|
34.2
|
1.0
|
HG13
|
E:ILE344
|
4.8
|
35.3
|
1.0
|
H
|
E:ILE344
|
4.8
|
37.5
|
1.0
|
HB3
|
E:ALA285
|
4.8
|
31.4
|
1.0
|
CG1
|
E:ILE344
|
4.9
|
32.5
|
1.0
|
H
|
E:ILE281
|
4.9
|
41.5
|
1.0
|
SG
|
E:CYS280
|
4.9
|
40.4
|
1.0
|
CB
|
E:ILE344
|
4.9
|
37.4
|
1.0
|
|
Iron binding site 2 out
of 90 in 8rvu
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Iron Binding Sites List in 8rvu
Iron binding site 2 out
of 90 in the Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe401
b:48.7
occ:1.00
|
FE2
|
E:SF4401
|
0.0
|
48.7
|
1.0
|
S4
|
E:SF4401
|
2.3
|
27.9
|
1.0
|
S3
|
E:SF4401
|
2.3
|
25.2
|
1.0
|
S1
|
E:SF4401
|
2.3
|
22.9
|
1.0
|
SG
|
E:CYS286
|
2.3
|
36.7
|
1.0
|
FE4
|
E:SF4401
|
2.7
|
44.7
|
1.0
|
FE3
|
E:SF4401
|
2.7
|
42.7
|
1.0
|
FE1
|
E:SF4401
|
2.7
|
42.3
|
1.0
|
H
|
E:CYS286
|
3.1
|
35.6
|
1.0
|
HB3
|
E:CYS286
|
3.4
|
32.4
|
1.0
|
CB
|
E:CYS286
|
3.5
|
22.9
|
1.0
|
HD13
|
E:ILE346
|
3.8
|
34.8
|
1.0
|
HD11
|
E:ILE346
|
3.8
|
35.2
|
1.0
|
S2
|
E:SF4401
|
3.9
|
26.3
|
1.0
|
HE22
|
E:GLN319
|
3.9
|
35.7
|
1.0
|
HZ
|
E:PHE318
|
3.9
|
40.3
|
1.0
|
N
|
E:CYS286
|
3.9
|
38.2
|
1.0
|
H
|
E:PHE284
|
4.0
|
37.9
|
1.0
|
HE1
|
E:PHE318
|
4.0
|
40.0
|
1.0
|
H
|
E:ALA285
|
4.1
|
33.0
|
1.0
|
HA
|
E:PHE284
|
4.2
|
36.6
|
1.0
|
HB2
|
E:CYS286
|
4.2
|
33.5
|
1.0
|
CD1
|
E:ILE346
|
4.2
|
30.1
|
1.0
|
CA
|
E:CYS286
|
4.4
|
27.0
|
1.0
|
CZ
|
E:PHE318
|
4.4
|
44.5
|
1.0
|
CE1
|
E:PHE318
|
4.5
|
43.0
|
1.0
|
N
|
E:ALA285
|
4.5
|
18.2
|
1.0
|
O
|
E:HOH505
|
4.5
|
33.3
|
1.0
|
N
|
E:PHE284
|
4.6
|
39.0
|
1.0
|
HB3
|
E:ALA285
|
4.6
|
31.4
|
1.0
|
NE2
|
E:GLN319
|
4.7
|
29.9
|
1.0
|
H
|
E:ARG287
|
4.7
|
36.4
|
1.0
|
SG
|
E:CYS283
|
4.7
|
39.0
|
1.0
|
SG
|
E:CYS280
|
4.7
|
40.4
|
1.0
|
HD12
|
E:ILE346
|
4.7
|
35.3
|
1.0
|
CA
|
E:PHE284
|
4.8
|
29.7
|
1.0
|
SG
|
E:CYS340
|
4.8
|
31.2
|
1.0
|
H
|
E:CYS283
|
4.8
|
37.8
|
1.0
|
HE21
|
E:GLN319
|
4.8
|
35.3
|
1.0
|
HA
|
E:CYS340
|
4.9
|
35.4
|
1.0
|
C
|
E:PHE284
|
4.9
|
26.9
|
1.0
|
HD2
|
E:PRO341
|
4.9
|
36.4
|
1.0
|
HB2
|
E:CYS340
|
5.0
|
32.8
|
1.0
|
HA
|
E:CYS286
|
5.0
|
34.4
|
1.0
|
|
Iron binding site 3 out
of 90 in 8rvu
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Iron Binding Sites List in 8rvu
Iron binding site 3 out
of 90 in the Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe401
b:42.7
occ:1.00
|
FE3
|
E:SF4401
|
0.0
|
42.7
|
1.0
|
S1
|
E:SF4401
|
2.3
|
22.9
|
1.0
|
S2
|
E:SF4401
|
2.3
|
26.3
|
1.0
|
S4
|
E:SF4401
|
2.3
|
27.9
|
1.0
|
SG
|
E:CYS283
|
2.3
|
39.0
|
1.0
|
FE1
|
E:SF4401
|
2.7
|
42.3
|
1.0
|
FE2
|
E:SF4401
|
2.7
|
48.7
|
1.0
|
FE4
|
E:SF4401
|
2.7
|
44.7
|
1.0
|
H
|
E:CYS283
|
2.8
|
37.8
|
1.0
|
HD2
|
E:PRO341
|
3.0
|
36.4
|
1.0
|
H
|
E:ALA285
|
3.2
|
33.0
|
1.0
|
H
|
E:PHE284
|
3.3
|
37.9
|
1.0
|
N
|
E:CYS283
|
3.6
|
39.2
|
1.0
|
CB
|
E:CYS283
|
3.6
|
29.1
|
1.0
|
HG13
|
E:ILE281
|
3.7
|
41.8
|
1.0
|
HD3
|
E:PRO341
|
3.7
|
34.7
|
1.0
|
CD
|
E:PRO341
|
3.7
|
27.6
|
1.0
|
N
|
E:PHE284
|
3.8
|
39.0
|
1.0
|
HB3
|
E:CYS283
|
3.8
|
36.1
|
1.0
|
HB3
|
E:ALA285
|
3.8
|
31.4
|
1.0
|
S3
|
E:SF4401
|
3.9
|
25.2
|
1.0
|
CA
|
E:CYS283
|
4.0
|
20.4
|
1.0
|
HG2
|
E:PRO341
|
4.0
|
34.8
|
1.0
|
N
|
E:ALA285
|
4.0
|
18.2
|
1.0
|
H
|
E:CYS286
|
4.1
|
35.6
|
1.0
|
C
|
E:CYS283
|
4.2
|
25.1
|
1.0
|
H
|
E:ILE281
|
4.2
|
41.5
|
1.0
|
H
|
E:ASN282
|
4.2
|
41.0
|
1.0
|
HA
|
E:CYS340
|
4.4
|
35.4
|
1.0
|
HB2
|
E:CYS283
|
4.4
|
36.8
|
1.0
|
CG
|
E:PRO341
|
4.4
|
21.6
|
1.0
|
HB2
|
E:ALA285
|
4.4
|
31.1
|
1.0
|
CG1
|
E:ILE281
|
4.5
|
45.6
|
1.0
|
CB
|
E:ALA285
|
4.5
|
19.4
|
1.0
|
HG12
|
E:ILE281
|
4.5
|
40.9
|
1.0
|
HD11
|
E:ILE281
|
4.5
|
40.4
|
1.0
|
N
|
E:ASN282
|
4.6
|
27.4
|
1.0
|
HA
|
E:PHE284
|
4.6
|
36.6
|
1.0
|
C
|
E:ASN282
|
4.7
|
43.9
|
1.0
|
CA
|
E:PHE284
|
4.7
|
29.7
|
1.0
|
SG
|
E:CYS280
|
4.7
|
40.4
|
1.0
|
HA
|
E:ASN282
|
4.7
|
41.0
|
1.0
|
SG
|
E:CYS286
|
4.7
|
36.7
|
1.0
|
SG
|
E:CYS340
|
4.7
|
31.2
|
1.0
|
C
|
E:PHE284
|
4.8
|
26.9
|
1.0
|
CA
|
E:ALA285
|
4.8
|
18.2
|
1.0
|
N
|
E:CYS286
|
4.9
|
38.2
|
1.0
|
HA
|
E:CYS283
|
4.9
|
35.2
|
1.0
|
HG3
|
E:PRO341
|
4.9
|
35.0
|
1.0
|
CA
|
E:ASN282
|
4.9
|
33.9
|
1.0
|
N
|
E:ILE281
|
5.0
|
36.5
|
1.0
|
N
|
E:PRO341
|
5.0
|
35.1
|
1.0
|
|
Iron binding site 4 out
of 90 in 8rvu
Go back to
Iron Binding Sites List in 8rvu
Iron binding site 4 out
of 90 in the Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe401
b:44.7
occ:1.00
|
FE4
|
E:SF4401
|
0.0
|
44.7
|
1.0
|
S2
|
E:SF4401
|
2.3
|
26.3
|
1.0
|
S1
|
E:SF4401
|
2.3
|
22.9
|
1.0
|
S3
|
E:SF4401
|
2.3
|
25.2
|
1.0
|
SG
|
E:CYS280
|
2.3
|
40.4
|
1.0
|
FE2
|
E:SF4401
|
2.7
|
48.7
|
1.0
|
FE1
|
E:SF4401
|
2.7
|
42.3
|
1.0
|
FE3
|
E:SF4401
|
2.7
|
42.7
|
1.0
|
HA
|
E:CYS280
|
3.3
|
41.0
|
1.0
|
H
|
E:ASN282
|
3.3
|
41.0
|
1.0
|
CB
|
E:CYS280
|
3.3
|
35.1
|
1.0
|
HB2
|
E:CYS280
|
3.3
|
39.8
|
1.0
|
H
|
E:ILE281
|
3.5
|
41.5
|
1.0
|
CA
|
E:CYS280
|
3.8
|
42.1
|
1.0
|
HD12
|
E:ILE344
|
3.8
|
37.0
|
1.0
|
S4
|
E:SF4401
|
3.9
|
27.9
|
1.0
|
H
|
E:CYS283
|
3.9
|
37.8
|
1.0
|
N
|
E:ILE281
|
4.0
|
36.5
|
1.0
|
N
|
E:ASN282
|
4.0
|
27.4
|
1.0
|
HA
|
E:ASN282
|
4.1
|
41.0
|
1.0
|
HB3
|
E:CYS280
|
4.2
|
40.5
|
1.0
|
C
|
E:CYS280
|
4.3
|
28.8
|
1.0
|
HE22
|
E:GLN319
|
4.4
|
35.7
|
1.0
|
HG13
|
E:ILE281
|
4.5
|
41.8
|
1.0
|
CD1
|
E:ILE344
|
4.5
|
27.5
|
1.0
|
HE21
|
E:GLN319
|
4.5
|
35.3
|
1.0
|
HD11
|
E:ILE344
|
4.5
|
35.3
|
1.0
|
H
|
E:PHE284
|
4.6
|
37.9
|
1.0
|
CA
|
E:ASN282
|
4.6
|
33.9
|
1.0
|
HD13
|
E:ILE344
|
4.6
|
34.7
|
1.0
|
N
|
E:CYS283
|
4.7
|
39.2
|
1.0
|
NE2
|
E:GLN319
|
4.8
|
29.9
|
1.0
|
HD2
|
E:PRO341
|
4.8
|
36.4
|
1.0
|
HB2
|
E:MET342
|
4.9
|
41.5
|
1.0
|
SG
|
E:CYS340
|
4.9
|
31.2
|
1.0
|
SG
|
E:CYS286
|
4.9
|
36.7
|
1.0
|
SG
|
E:CYS283
|
4.9
|
39.0
|
1.0
|
C
|
E:ILE281
|
5.0
|
35.7
|
1.0
|
HZ
|
E:PHE318
|
5.0
|
40.3
|
1.0
|
|
Iron binding site 5 out
of 90 in 8rvu
Go back to
Iron Binding Sites List in 8rvu
Iron binding site 5 out
of 90 in the Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe402
b:63.7
occ:1.00
|
FE1
|
E:SF4402
|
0.0
|
63.7
|
1.0
|
S2
|
E:SF4402
|
2.3
|
36.2
|
1.0
|
S4
|
E:SF4402
|
2.3
|
42.3
|
1.0
|
S3
|
E:SF4402
|
2.3
|
30.9
|
1.0
|
SG
|
E:CYS187
|
2.3
|
46.3
|
1.0
|
FE3
|
E:SF4402
|
2.7
|
55.9
|
1.0
|
FE4
|
E:SF4402
|
2.7
|
49.6
|
1.0
|
FE2
|
E:SF4402
|
2.7
|
55.1
|
1.0
|
HB2
|
E:CYS187
|
2.9
|
43.4
|
1.0
|
CB
|
E:CYS187
|
3.1
|
37.7
|
1.0
|
HB3
|
E:CYS187
|
3.4
|
42.9
|
1.0
|
HB3
|
E:CYS96
|
3.9
|
36.7
|
1.0
|
S1
|
E:SF4402
|
3.9
|
25.0
|
1.0
|
HA
|
E:CYS184
|
4.0
|
45.3
|
1.0
|
HB2
|
E:PRO95
|
4.2
|
40.9
|
1.0
|
H
|
E:CYS96
|
4.4
|
39.3
|
1.0
|
O
|
E:ILE189
|
4.5
|
37.4
|
1.0
|
CA
|
E:CYS187
|
4.5
|
37.2
|
1.0
|
HB3
|
E:CYS122
|
4.6
|
44.2
|
1.0
|
HA
|
E:CYS187
|
4.6
|
43.7
|
1.0
|
CB
|
E:CYS96
|
4.7
|
30.3
|
1.0
|
HG22
|
E:ILE189
|
4.7
|
43.5
|
1.0
|
SG
|
E:CYS96
|
4.7
|
41.1
|
1.0
|
HD2
|
E:PRO95
|
4.8
|
40.3
|
1.0
|
HG2
|
E:PRO95
|
4.8
|
39.4
|
1.0
|
HA2
|
E:GLY124
|
4.9
|
48.2
|
1.0
|
SG
|
E:CYS184
|
4.9
|
52.1
|
1.0
|
N
|
E:CYS96
|
4.9
|
32.7
|
1.0
|
CA
|
E:CYS184
|
4.9
|
42.1
|
1.0
|
HG23
|
E:ILE189
|
4.9
|
44.0
|
1.0
|
SG
|
E:CYS122
|
4.9
|
41.1
|
1.0
|
HD22
|
E:ASN183
|
5.0
|
38.6
|
1.0
|
|
Iron binding site 6 out
of 90 in 8rvu
Go back to
Iron Binding Sites List in 8rvu
Iron binding site 6 out
of 90 in the Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe402
b:55.1
occ:1.00
|
FE2
|
E:SF4402
|
0.0
|
55.1
|
1.0
|
S4
|
E:SF4402
|
2.3
|
42.3
|
1.0
|
S1
|
E:SF4402
|
2.3
|
25.0
|
1.0
|
S3
|
E:SF4402
|
2.3
|
30.9
|
1.0
|
SG
|
E:CYS96
|
2.3
|
41.1
|
1.0
|
HB3
|
E:CYS96
|
2.7
|
36.7
|
1.0
|
FE4
|
E:SF4402
|
2.7
|
49.6
|
1.0
|
FE3
|
E:SF4402
|
2.7
|
55.9
|
1.0
|
FE1
|
E:SF4402
|
2.7
|
63.7
|
1.0
|
CB
|
E:CYS96
|
3.0
|
30.3
|
1.0
|
H
|
E:CYS96
|
3.4
|
39.3
|
1.0
|
HE2
|
E:LYS94
|
3.6
|
43.9
|
1.0
|
HB2
|
E:CYS96
|
3.7
|
38.0
|
1.0
|
S2
|
E:SF4402
|
3.9
|
36.2
|
1.0
|
HH21
|
E:ARG181
|
4.0
|
43.4
|
1.0
|
HH22
|
E:ARG181
|
4.0
|
43.2
|
1.0
|
N
|
E:CYS96
|
4.0
|
32.7
|
1.0
|
CA
|
E:CYS96
|
4.2
|
18.5
|
1.0
|
HD21
|
E:ASN183
|
4.3
|
38.2
|
1.0
|
HA
|
E:CYS333
|
4.3
|
31.2
|
1.0
|
HB2
|
E:LYS94
|
4.4
|
42.6
|
1.0
|
NH2
|
E:ARG181
|
4.4
|
31.8
|
1.0
|
CE
|
E:LYS94
|
4.5
|
41.9
|
1.0
|
HB3
|
E:LYS94
|
4.5
|
42.5
|
1.0
|
HE3
|
E:LYS94
|
4.6
|
43.5
|
1.0
|
HD2
|
E:PRO95
|
4.6
|
40.3
|
1.0
|
HA
|
E:CYS96
|
4.7
|
36.6
|
1.0
|
HG1
|
E:THR125
|
4.7
|
49.9
|
1.0
|
SG
|
E:CYS122
|
4.7
|
41.1
|
1.0
|
SG
|
E:CYS184
|
4.8
|
52.1
|
1.0
|
HD22
|
E:ASN183
|
4.8
|
38.6
|
1.0
|
ND2
|
E:ASN183
|
4.9
|
38.1
|
1.0
|
HB2
|
E:PRO95
|
4.9
|
40.9
|
1.0
|
CB
|
E:LYS94
|
4.9
|
40.0
|
1.0
|
SG
|
E:CYS187
|
5.0
|
46.3
|
1.0
|
HD2
|
E:LYS94
|
5.0
|
44.0
|
1.0
|
|
Iron binding site 7 out
of 90 in 8rvu
Go back to
Iron Binding Sites List in 8rvu
Iron binding site 7 out
of 90 in the Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe402
b:55.9
occ:1.00
|
FE3
|
E:SF4402
|
0.0
|
55.9
|
1.0
|
S4
|
E:SF4402
|
2.3
|
42.3
|
1.0
|
S2
|
E:SF4402
|
2.3
|
36.2
|
1.0
|
S1
|
E:SF4402
|
2.3
|
25.0
|
1.0
|
SG
|
E:CYS122
|
2.3
|
41.1
|
1.0
|
FE4
|
E:SF4402
|
2.7
|
49.6
|
1.0
|
FE1
|
E:SF4402
|
2.7
|
63.7
|
1.0
|
FE2
|
E:SF4402
|
2.7
|
55.1
|
1.0
|
HB3
|
E:CYS122
|
2.9
|
44.2
|
1.0
|
CB
|
E:CYS122
|
3.2
|
34.6
|
1.0
|
HD2
|
E:PRO95
|
3.5
|
40.3
|
1.0
|
HA2
|
E:GLY124
|
3.6
|
48.2
|
1.0
|
HB2
|
E:CYS122
|
3.7
|
43.4
|
1.0
|
H
|
E:GLY124
|
3.7
|
48.4
|
1.0
|
HB3
|
E:LYS94
|
3.8
|
42.5
|
1.0
|
S3
|
E:SF4402
|
3.9
|
30.9
|
1.0
|
HD2
|
E:LYS94
|
4.0
|
44.0
|
1.0
|
HE2
|
E:LYS94
|
4.0
|
43.9
|
1.0
|
N
|
E:GLY124
|
4.2
|
50.0
|
1.0
|
CA
|
E:GLY124
|
4.3
|
46.1
|
1.0
|
CA
|
E:CYS122
|
4.4
|
46.7
|
1.0
|
O
|
E:CYS122
|
4.4
|
51.5
|
1.0
|
C
|
E:CYS122
|
4.4
|
52.0
|
1.0
|
H
|
E:CYS96
|
4.4
|
39.3
|
1.0
|
CD
|
E:PRO95
|
4.5
|
39.6
|
1.0
|
HG2
|
E:PRO95
|
4.5
|
39.4
|
1.0
|
HG1
|
E:THR125
|
4.5
|
49.9
|
1.0
|
SG
|
E:CYS96
|
4.5
|
41.1
|
1.0
|
HG23
|
E:THR125
|
4.6
|
50.2
|
1.0
|
SG
|
E:CYS184
|
4.6
|
52.1
|
1.0
|
HB2
|
E:LYS94
|
4.6
|
42.6
|
1.0
|
CE
|
E:LYS94
|
4.7
|
41.9
|
1.0
|
SG
|
E:CYS187
|
4.7
|
46.3
|
1.0
|
CB
|
E:LYS94
|
4.7
|
40.0
|
1.0
|
HE3
|
E:LYS94
|
4.7
|
43.5
|
1.0
|
CD
|
E:LYS94
|
4.7
|
43.5
|
1.0
|
HB2
|
E:PRO95
|
4.8
|
40.9
|
1.0
|
HA
|
E:CYS122
|
4.8
|
45.9
|
1.0
|
C
|
E:GLY124
|
4.9
|
45.9
|
1.0
|
CG
|
E:PRO95
|
4.9
|
32.2
|
1.0
|
HB3
|
E:CYS96
|
5.0
|
36.7
|
1.0
|
HD3
|
E:PRO95
|
5.0
|
41.0
|
1.0
|
|
Iron binding site 8 out
of 90 in 8rvu
Go back to
Iron Binding Sites List in 8rvu
Iron binding site 8 out
of 90 in the Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe402
b:49.6
occ:1.00
|
FE4
|
E:SF4402
|
0.0
|
49.6
|
1.0
|
S3
|
E:SF4402
|
2.3
|
30.9
|
1.0
|
S1
|
E:SF4402
|
2.3
|
25.0
|
1.0
|
S2
|
E:SF4402
|
2.3
|
36.2
|
1.0
|
SG
|
E:CYS184
|
2.3
|
52.1
|
1.0
|
FE3
|
E:SF4402
|
2.7
|
55.9
|
1.0
|
FE1
|
E:SF4402
|
2.7
|
63.7
|
1.0
|
FE2
|
E:SF4402
|
2.7
|
55.1
|
1.0
|
HA
|
E:CYS184
|
2.9
|
45.3
|
1.0
|
HH21
|
E:ARG181
|
3.2
|
43.4
|
1.0
|
HA2
|
E:GLY124
|
3.2
|
48.2
|
1.0
|
CB
|
E:CYS184
|
3.3
|
40.0
|
1.0
|
HB3
|
E:CYS184
|
3.5
|
45.9
|
1.0
|
CA
|
E:CYS184
|
3.5
|
42.1
|
1.0
|
HG1
|
E:THR125
|
3.6
|
49.9
|
1.0
|
HD21
|
E:ASN183
|
3.6
|
38.2
|
1.0
|
NH2
|
E:ARG181
|
3.9
|
31.8
|
1.0
|
HB2
|
E:CYS187
|
3.9
|
43.4
|
1.0
|
S4
|
E:SF4402
|
3.9
|
42.3
|
1.0
|
H
|
E:THR125
|
3.9
|
49.2
|
1.0
|
HH22
|
E:ARG181
|
4.0
|
43.2
|
1.0
|
ND2
|
E:ASN183
|
4.1
|
38.1
|
1.0
|
HB2
|
E:CYS184
|
4.2
|
43.9
|
1.0
|
CA
|
E:GLY124
|
4.2
|
46.1
|
1.0
|
OG1
|
E:THR125
|
4.2
|
49.6
|
1.0
|
HD22
|
E:ASN183
|
4.3
|
38.6
|
1.0
|
N
|
E:CYS184
|
4.3
|
40.2
|
1.0
|
N
|
E:THR125
|
4.5
|
42.5
|
1.0
|
CB
|
E:CYS187
|
4.5
|
37.7
|
1.0
|
HB3
|
E:CYS187
|
4.5
|
42.9
|
1.0
|
H
|
E:CYS184
|
4.6
|
46.0
|
1.0
|
SG
|
E:CYS122
|
4.6
|
41.1
|
1.0
|
HE
|
E:ARG181
|
4.6
|
44.8
|
1.0
|
HA3
|
E:GLY124
|
4.7
|
49.1
|
1.0
|
SG
|
E:CYS187
|
4.7
|
46.3
|
1.0
|
C
|
E:CYS184
|
4.7
|
47.2
|
1.0
|
C
|
E:GLY124
|
4.8
|
45.9
|
1.0
|
O
|
E:CYS184
|
4.8
|
49.5
|
1.0
|
H
|
E:GLY124
|
4.9
|
48.4
|
1.0
|
N
|
E:GLY124
|
4.9
|
50.0
|
1.0
|
CG
|
E:ASN183
|
4.9
|
32.6
|
1.0
|
CZ
|
E:ARG181
|
4.9
|
39.0
|
1.0
|
C
|
E:ASN183
|
4.9
|
30.6
|
1.0
|
O
|
E:ASN183
|
4.9
|
35.7
|
1.0
|
HG23
|
E:THR125
|
5.0
|
50.2
|
1.0
|
SG
|
E:CYS96
|
5.0
|
41.1
|
1.0
|
|
Iron binding site 9 out
of 90 in 8rvu
Go back to
Iron Binding Sites List in 8rvu
Iron binding site 9 out
of 90 in the Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe403
b:47.0
occ:1.00
|
FE1
|
E:SF4403
|
0.0
|
47.0
|
1.0
|
S4
|
E:SF4403
|
2.3
|
27.7
|
1.0
|
S3
|
E:SF4403
|
2.3
|
23.9
|
1.0
|
S2
|
E:SF4403
|
2.3
|
24.9
|
1.0
|
SG
|
E:CYS330
|
2.3
|
33.2
|
1.0
|
FE4
|
E:SF4403
|
2.7
|
44.3
|
1.0
|
FE3
|
E:SF4403
|
2.7
|
47.0
|
1.0
|
FE2
|
E:SF4403
|
2.7
|
47.8
|
1.0
|
H
|
E:ASN332
|
3.1
|
33.8
|
1.0
|
HB2
|
E:CYS330
|
3.3
|
31.2
|
1.0
|
CB
|
E:CYS330
|
3.3
|
29.1
|
1.0
|
H
|
E:ILE331
|
3.4
|
32.8
|
1.0
|
HA
|
E:CYS330
|
3.4
|
33.8
|
1.0
|
HE1
|
E:MET326
|
3.7
|
33.4
|
1.0
|
HB3
|
E:TYR350
|
3.7
|
32.5
|
1.0
|
CA
|
E:CYS330
|
3.8
|
27.5
|
1.0
|
N
|
E:ASN332
|
3.8
|
28.9
|
1.0
|
HA
|
E:ASN332
|
3.9
|
34.4
|
1.0
|
S1
|
E:SF4403
|
3.9
|
24.5
|
1.0
|
N
|
E:ILE331
|
3.9
|
31.6
|
1.0
|
H
|
E:CYS333
|
3.9
|
33.5
|
1.0
|
HB3
|
E:CYS330
|
4.2
|
31.8
|
1.0
|
C
|
E:CYS330
|
4.2
|
21.2
|
1.0
|
HB2
|
E:TYR350
|
4.3
|
31.2
|
1.0
|
CA
|
E:ASN332
|
4.4
|
32.0
|
1.0
|
HG13
|
E:ILE331
|
4.4
|
33.7
|
1.0
|
CB
|
E:TYR350
|
4.4
|
27.3
|
1.0
|
HD2
|
E:TYR350
|
4.5
|
29.9
|
1.0
|
CE
|
E:MET326
|
4.5
|
26.0
|
1.0
|
H
|
E:GLY334
|
4.6
|
35.1
|
1.0
|
HE3
|
E:MET326
|
4.6
|
32.8
|
1.0
|
N
|
E:CYS333
|
4.7
|
33.7
|
1.0
|
HE2
|
E:MET326
|
4.8
|
31.6
|
1.0
|
HH22
|
E:ARG322
|
4.8
|
29.8
|
1.0
|
C
|
E:ILE331
|
4.8
|
23.0
|
1.0
|
SG
|
E:CYS290
|
4.8
|
25.5
|
1.0
|
HA
|
E:ALA347
|
4.9
|
36.8
|
1.0
|
SG
|
E:CYS336
|
4.9
|
40.8
|
1.0
|
CD2
|
E:TYR350
|
4.9
|
22.9
|
1.0
|
CA
|
E:ILE331
|
4.9
|
28.7
|
1.0
|
CG
|
E:TYR350
|
5.0
|
25.0
|
1.0
|
SG
|
E:CYS333
|
5.0
|
28.4
|
1.0
|
|
Iron binding site 10 out
of 90 in 8rvu
Go back to
Iron Binding Sites List in 8rvu
Iron binding site 10 out
of 90 in the Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cryoem Structure of the Elp-Hdr Complex of Methanothermobacter Marburgensis State 2 (Composite Structure) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe403
b:47.8
occ:1.00
|
FE2
|
E:SF4403
|
0.0
|
47.8
|
1.0
|
S3
|
E:SF4403
|
2.3
|
23.9
|
1.0
|
S4
|
E:SF4403
|
2.3
|
27.7
|
1.0
|
S1
|
E:SF4403
|
2.3
|
24.5
|
1.0
|
SG
|
E:CYS290
|
2.3
|
25.5
|
1.0
|
FE3
|
E:SF4403
|
2.7
|
47.0
|
1.0
|
FE4
|
E:SF4403
|
2.7
|
44.3
|
1.0
|
FE1
|
E:SF4403
|
2.7
|
47.0
|
1.0
|
HD2
|
E:PRO291
|
3.2
|
31.5
|
1.0
|
HB2
|
E:CYS290
|
3.2
|
30.8
|
1.0
|
CB
|
E:CYS290
|
3.3
|
28.5
|
1.0
|
HH12
|
E:ARG322
|
3.3
|
31.4
|
1.0
|
HA
|
E:CYS290
|
3.3
|
30.7
|
1.0
|
HE1
|
E:MET326
|
3.6
|
33.4
|
1.0
|
HE3
|
E:MET326
|
3.6
|
32.8
|
1.0
|
HH22
|
E:ARG322
|
3.7
|
29.8
|
1.0
|
CA
|
E:CYS290
|
3.8
|
22.3
|
1.0
|
S2
|
E:SF4403
|
3.9
|
24.9
|
1.0
|
HG23
|
E:VAL292
|
4.0
|
34.0
|
1.0
|
CE
|
E:MET326
|
4.1
|
26.0
|
1.0
|
CD
|
E:PRO291
|
4.1
|
20.0
|
1.0
|
NH1
|
E:ARG322
|
4.1
|
23.4
|
1.0
|
HB3
|
E:CYS290
|
4.1
|
28.7
|
1.0
|
H
|
E:VAL292
|
4.2
|
34.4
|
1.0
|
HB3
|
E:CYS336
|
4.4
|
36.2
|
1.0
|
NH2
|
E:ARG322
|
4.4
|
20.8
|
1.0
|
SG
|
E:CYS333
|
4.5
|
28.4
|
1.0
|
HB
|
E:VAL292
|
4.5
|
34.0
|
1.0
|
HD3
|
E:PRO291
|
4.5
|
32.6
|
1.0
|
HA
|
E:CYS330
|
4.6
|
33.8
|
1.0
|
C
|
E:CYS290
|
4.6
|
27.9
|
1.0
|
HE2
|
E:MET326
|
4.6
|
31.6
|
1.0
|
N
|
E:PRO291
|
4.6
|
35.1
|
1.0
|
HH11
|
E:ARG322
|
4.7
|
29.9
|
1.0
|
H
|
E:ILE331
|
4.7
|
32.8
|
1.0
|
SG
|
E:CYS336
|
4.7
|
40.8
|
1.0
|
HG2
|
E:PRO291
|
4.8
|
32.8
|
1.0
|
CZ
|
E:ARG322
|
4.8
|
24.6
|
1.0
|
CG2
|
E:VAL292
|
4.8
|
29.6
|
1.0
|
H
|
E:CYS336
|
4.8
|
36.6
|
1.0
|
SG
|
E:CYS330
|
4.9
|
33.2
|
1.0
|
HG21
|
E:VAL292
|
4.9
|
34.3
|
1.0
|
HB2
|
E:CYS330
|
5.0
|
31.2
|
1.0
|
|
Reference:
S.Nomura,
P.San Segundo-Acosta,
J.Kahnt,
B.J.Murphy,
S.Shima.
Altered Electron Flow in Hydrogenotrophic Methanogens Under Nickel Limitation To Be Published.
Page generated: Thu Aug 7 22:37:25 2025
|