Iron in PDB 8s5j: Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction
Enzymatic activity of Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction
All present enzymatic activity of Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction:
4.2.1.22;
Iron Binding Sites:
The binding sites of Iron atom in the Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction
(pdb code 8s5j). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction, PDB code: 8s5j:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 8s5j
Go back to
Iron Binding Sites List in 8s5j
Iron binding site 1 out
of 10 in the Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:37.7
occ:1.00
|
FE
|
A:HEM601
|
0.0
|
37.7
|
1.0
|
NC
|
A:HEM601
|
2.0
|
37.7
|
1.0
|
ND
|
A:HEM601
|
2.0
|
37.7
|
1.0
|
NA
|
A:HEM601
|
2.0
|
37.7
|
1.0
|
NB
|
A:HEM601
|
2.0
|
37.7
|
1.0
|
SG
|
A:CYS52
|
2.3
|
39.5
|
1.0
|
HG
|
A:CYS52
|
2.9
|
39.5
|
1.0
|
C4B
|
A:HEM601
|
3.0
|
37.7
|
1.0
|
C1B
|
A:HEM601
|
3.0
|
37.7
|
1.0
|
C1A
|
A:HEM601
|
3.0
|
37.7
|
1.0
|
C1C
|
A:HEM601
|
3.0
|
37.7
|
1.0
|
C4A
|
A:HEM601
|
3.0
|
37.7
|
1.0
|
C4D
|
A:HEM601
|
3.0
|
37.7
|
1.0
|
C1D
|
A:HEM601
|
3.0
|
37.7
|
1.0
|
C4C
|
A:HEM601
|
3.0
|
37.7
|
1.0
|
CHC
|
A:HEM601
|
3.3
|
37.7
|
1.0
|
CHA
|
A:HEM601
|
3.4
|
37.7
|
1.0
|
CHB
|
A:HEM601
|
3.4
|
37.7
|
1.0
|
CHD
|
A:HEM601
|
3.4
|
37.7
|
1.0
|
HE1
|
A:HIS65
|
3.4
|
34.8
|
1.0
|
HD2
|
A:PRO64
|
3.9
|
41.0
|
1.0
|
CB
|
A:CYS52
|
3.9
|
39.5
|
1.0
|
CE1
|
A:HIS65
|
3.9
|
34.8
|
1.0
|
HB2
|
A:TRP54
|
4.0
|
37.6
|
1.0
|
ND1
|
A:HIS65
|
4.0
|
34.8
|
1.0
|
HB2
|
A:CYS52
|
4.0
|
39.5
|
1.0
|
C3B
|
A:HEM601
|
4.1
|
37.7
|
1.0
|
C2B
|
A:HEM601
|
4.1
|
37.7
|
1.0
|
C2A
|
A:HEM601
|
4.2
|
37.7
|
1.0
|
C3A
|
A:HEM601
|
4.2
|
37.7
|
1.0
|
C2C
|
A:HEM601
|
4.2
|
37.7
|
1.0
|
C3D
|
A:HEM601
|
4.2
|
37.7
|
1.0
|
C2D
|
A:HEM601
|
4.2
|
37.7
|
1.0
|
C3C
|
A:HEM601
|
4.2
|
37.7
|
1.0
|
HA
|
A:CYS52
|
4.2
|
39.5
|
1.0
|
HHC
|
A:HEM601
|
4.3
|
37.7
|
1.0
|
HHA
|
A:HEM601
|
4.3
|
37.7
|
1.0
|
HHB
|
A:HEM601
|
4.3
|
37.7
|
1.0
|
HHD
|
A:HEM601
|
4.4
|
37.7
|
1.0
|
H
|
A:THR53
|
4.5
|
44.0
|
1.0
|
H
|
A:TRP54
|
4.5
|
37.6
|
1.0
|
HB3
|
A:CYS52
|
4.5
|
39.5
|
1.0
|
CA
|
A:CYS52
|
4.6
|
39.5
|
1.0
|
CD
|
A:PRO64
|
4.7
|
41.0
|
1.0
|
HG2
|
A:PRO64
|
4.8
|
41.0
|
1.0
|
HH12
|
A:ARG266
|
4.8
|
27.9
|
1.0
|
CB
|
A:TRP54
|
4.8
|
37.6
|
1.0
|
HB3
|
A:TRP54
|
4.9
|
37.6
|
1.0
|
HD3
|
A:PRO64
|
4.9
|
41.0
|
1.0
|
|
Iron binding site 2 out
of 10 in 8s5j
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Iron Binding Sites List in 8s5j
Iron binding site 2 out
of 10 in the Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe601
b:43.5
occ:1.00
|
FE
|
B:HEM601
|
0.0
|
43.5
|
1.0
|
NC
|
B:HEM601
|
2.0
|
43.5
|
1.0
|
ND
|
B:HEM601
|
2.0
|
43.5
|
1.0
|
NA
|
B:HEM601
|
2.0
|
43.5
|
1.0
|
NB
|
B:HEM601
|
2.0
|
43.5
|
1.0
|
C4B
|
B:HEM601
|
3.0
|
43.5
|
1.0
|
C1B
|
B:HEM601
|
3.0
|
43.5
|
1.0
|
C1A
|
B:HEM601
|
3.0
|
43.5
|
1.0
|
C1C
|
B:HEM601
|
3.0
|
43.5
|
1.0
|
C4A
|
B:HEM601
|
3.0
|
43.5
|
1.0
|
C4D
|
B:HEM601
|
3.0
|
43.5
|
1.0
|
SG
|
B:CYS52
|
3.0
|
45.4
|
1.0
|
C1D
|
B:HEM601
|
3.0
|
43.5
|
1.0
|
C4C
|
B:HEM601
|
3.0
|
43.5
|
1.0
|
CHC
|
B:HEM601
|
3.3
|
43.5
|
1.0
|
CHA
|
B:HEM601
|
3.4
|
43.5
|
1.0
|
CHB
|
B:HEM601
|
3.4
|
43.5
|
1.0
|
HG
|
B:CYS52
|
3.4
|
45.4
|
1.0
|
CHD
|
B:HEM601
|
3.4
|
43.5
|
1.0
|
HD2
|
B:PRO64
|
4.0
|
48.3
|
1.0
|
HD2
|
B:HIS65
|
4.1
|
40.3
|
1.0
|
C3B
|
B:HEM601
|
4.2
|
43.5
|
1.0
|
C2B
|
B:HEM601
|
4.2
|
43.5
|
1.0
|
C2A
|
B:HEM601
|
4.2
|
43.5
|
1.0
|
C3A
|
B:HEM601
|
4.2
|
43.5
|
1.0
|
C2C
|
B:HEM601
|
4.2
|
43.5
|
1.0
|
C3D
|
B:HEM601
|
4.2
|
43.5
|
1.0
|
HB2
|
B:TRP54
|
4.2
|
43.6
|
1.0
|
C3C
|
B:HEM601
|
4.2
|
43.5
|
1.0
|
C2D
|
B:HEM601
|
4.2
|
43.5
|
1.0
|
HA
|
B:CYS52
|
4.3
|
45.4
|
1.0
|
HHC
|
B:HEM601
|
4.3
|
43.5
|
1.0
|
HHA
|
B:HEM601
|
4.3
|
43.5
|
1.0
|
HHB
|
B:HEM601
|
4.4
|
43.5
|
1.0
|
HHD
|
B:HEM601
|
4.4
|
43.5
|
1.0
|
CB
|
B:CYS52
|
4.5
|
45.4
|
1.0
|
H
|
B:THR53
|
4.5
|
49.4
|
1.0
|
HB2
|
B:CYS52
|
4.6
|
45.4
|
1.0
|
CD2
|
B:HIS65
|
4.7
|
40.3
|
1.0
|
H
|
B:TRP54
|
4.7
|
43.6
|
1.0
|
HH12
|
B:ARG266
|
4.7
|
32.0
|
1.0
|
CA
|
B:CYS52
|
4.9
|
45.4
|
1.0
|
CD
|
B:PRO64
|
4.9
|
48.3
|
1.0
|
HB2
|
B:HIS65
|
5.0
|
40.3
|
1.0
|
HB3
|
B:ALA226
|
5.0
|
31.5
|
1.0
|
HG2
|
B:PRO64
|
5.0
|
48.3
|
1.0
|
|
Iron binding site 3 out
of 10 in 8s5j
Go back to
Iron Binding Sites List in 8s5j
Iron binding site 3 out
of 10 in the Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe601
b:39.6
occ:1.00
|
FE
|
C:HEM601
|
0.0
|
39.6
|
1.0
|
NC
|
C:HEM601
|
2.0
|
39.6
|
1.0
|
ND
|
C:HEM601
|
2.0
|
39.6
|
1.0
|
NA
|
C:HEM601
|
2.0
|
39.6
|
1.0
|
NB
|
C:HEM601
|
2.0
|
39.6
|
1.0
|
SG
|
C:CYS52
|
2.3
|
42.9
|
1.0
|
HG
|
C:CYS52
|
2.7
|
42.9
|
1.0
|
C4B
|
C:HEM601
|
3.0
|
39.6
|
1.0
|
C1B
|
C:HEM601
|
3.0
|
39.6
|
1.0
|
C1A
|
C:HEM601
|
3.0
|
39.6
|
1.0
|
C1C
|
C:HEM601
|
3.0
|
39.6
|
1.0
|
C4A
|
C:HEM601
|
3.0
|
39.6
|
1.0
|
C4D
|
C:HEM601
|
3.0
|
39.6
|
1.0
|
C1D
|
C:HEM601
|
3.0
|
39.6
|
1.0
|
C4C
|
C:HEM601
|
3.0
|
39.6
|
1.0
|
CHC
|
C:HEM601
|
3.3
|
39.6
|
1.0
|
CHA
|
C:HEM601
|
3.4
|
39.6
|
1.0
|
CHB
|
C:HEM601
|
3.4
|
39.6
|
1.0
|
CHD
|
C:HEM601
|
3.4
|
39.6
|
1.0
|
HE1
|
C:HIS65
|
3.5
|
35.8
|
1.0
|
HD2
|
C:PRO64
|
3.9
|
43.8
|
1.0
|
CB
|
C:CYS52
|
3.9
|
42.9
|
1.0
|
CE1
|
C:HIS65
|
4.0
|
35.8
|
1.0
|
HB2
|
C:TRP54
|
4.0
|
39.4
|
1.0
|
ND1
|
C:HIS65
|
4.1
|
35.8
|
1.0
|
HB2
|
C:CYS52
|
4.1
|
42.9
|
1.0
|
C3B
|
C:HEM601
|
4.1
|
39.6
|
1.0
|
C2B
|
C:HEM601
|
4.1
|
39.6
|
1.0
|
C2A
|
C:HEM601
|
4.2
|
39.6
|
1.0
|
C3A
|
C:HEM601
|
4.2
|
39.6
|
1.0
|
HA
|
C:CYS52
|
4.2
|
42.9
|
1.0
|
C2C
|
C:HEM601
|
4.2
|
39.6
|
1.0
|
C3D
|
C:HEM601
|
4.2
|
39.6
|
1.0
|
C2D
|
C:HEM601
|
4.2
|
39.6
|
1.0
|
C3C
|
C:HEM601
|
4.2
|
39.6
|
1.0
|
H
|
C:THR53
|
4.3
|
45.9
|
1.0
|
HHC
|
C:HEM601
|
4.3
|
39.6
|
1.0
|
HHA
|
C:HEM601
|
4.3
|
39.6
|
1.0
|
HHB
|
C:HEM601
|
4.3
|
39.6
|
1.0
|
HHD
|
C:HEM601
|
4.4
|
39.6
|
1.0
|
H
|
C:TRP54
|
4.4
|
39.4
|
1.0
|
HB3
|
C:CYS52
|
4.6
|
42.9
|
1.0
|
CA
|
C:CYS52
|
4.6
|
42.9
|
1.0
|
CD
|
C:PRO64
|
4.7
|
43.8
|
1.0
|
HH12
|
C:ARG266
|
4.8
|
29.1
|
1.0
|
HG2
|
C:PRO64
|
4.8
|
43.8
|
1.0
|
CB
|
C:TRP54
|
4.8
|
39.4
|
1.0
|
HB3
|
C:TRP54
|
4.9
|
39.4
|
1.0
|
HD3
|
C:PRO64
|
4.9
|
43.8
|
1.0
|
N
|
C:THR53
|
4.9
|
45.9
|
1.0
|
|
Iron binding site 4 out
of 10 in 8s5j
Go back to
Iron Binding Sites List in 8s5j
Iron binding site 4 out
of 10 in the Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe601
b:38.6
occ:1.00
|
FE
|
D:HEM601
|
0.0
|
38.6
|
1.0
|
ND
|
D:HEM601
|
2.0
|
38.6
|
1.0
|
NC
|
D:HEM601
|
2.0
|
38.6
|
1.0
|
NA
|
D:HEM601
|
2.0
|
38.6
|
1.0
|
NB
|
D:HEM601
|
2.0
|
38.6
|
1.0
|
HG
|
D:CYS52
|
2.4
|
42.2
|
1.0
|
C4B
|
D:HEM601
|
2.9
|
38.6
|
1.0
|
C1B
|
D:HEM601
|
3.0
|
38.6
|
1.0
|
C1A
|
D:HEM601
|
3.0
|
38.6
|
1.0
|
C1C
|
D:HEM601
|
3.0
|
38.6
|
1.0
|
C4D
|
D:HEM601
|
3.0
|
38.6
|
1.0
|
C4A
|
D:HEM601
|
3.0
|
38.6
|
1.0
|
C1D
|
D:HEM601
|
3.0
|
38.6
|
1.0
|
C4C
|
D:HEM601
|
3.0
|
38.6
|
1.0
|
CHC
|
D:HEM601
|
3.3
|
38.6
|
1.0
|
CHA
|
D:HEM601
|
3.3
|
38.6
|
1.0
|
SG
|
D:CYS52
|
3.4
|
42.2
|
1.0
|
CHB
|
D:HEM601
|
3.4
|
38.6
|
1.0
|
CHD
|
D:HEM601
|
3.4
|
38.6
|
1.0
|
HD2
|
D:PRO64
|
4.1
|
41.7
|
1.0
|
HB2
|
D:CYS52
|
4.1
|
42.2
|
1.0
|
C3B
|
D:HEM601
|
4.1
|
38.6
|
1.0
|
C2B
|
D:HEM601
|
4.1
|
38.6
|
1.0
|
C2A
|
D:HEM601
|
4.2
|
38.6
|
1.0
|
C3A
|
D:HEM601
|
4.2
|
38.6
|
1.0
|
C3D
|
D:HEM601
|
4.2
|
38.6
|
1.0
|
C2C
|
D:HEM601
|
4.2
|
38.6
|
1.0
|
C2D
|
D:HEM601
|
4.2
|
38.6
|
1.0
|
C3C
|
D:HEM601
|
4.2
|
38.6
|
1.0
|
HB2
|
D:TRP54
|
4.3
|
40.4
|
1.0
|
HHC
|
D:HEM601
|
4.3
|
38.6
|
1.0
|
HHA
|
D:HEM601
|
4.3
|
38.6
|
1.0
|
CB
|
D:CYS52
|
4.3
|
42.2
|
1.0
|
HHB
|
D:HEM601
|
4.4
|
38.6
|
1.0
|
HHD
|
D:HEM601
|
4.4
|
38.6
|
1.0
|
HA
|
D:CYS52
|
4.4
|
42.2
|
1.0
|
HH12
|
D:ARG266
|
4.5
|
30.4
|
1.0
|
HG2
|
D:PRO64
|
4.5
|
41.7
|
1.0
|
HB2
|
D:HIS65
|
4.5
|
35.2
|
1.0
|
H
|
D:THR53
|
4.6
|
46.1
|
1.0
|
HD2
|
D:HIS65
|
4.9
|
35.2
|
1.0
|
CD
|
D:PRO64
|
4.9
|
41.7
|
1.0
|
H
|
D:TRP54
|
5.0
|
40.4
|
1.0
|
CA
|
D:CYS52
|
5.0
|
42.2
|
1.0
|
|
Iron binding site 5 out
of 10 in 8s5j
Go back to
Iron Binding Sites List in 8s5j
Iron binding site 5 out
of 10 in the Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe601
b:39.8
occ:1.00
|
FE
|
E:HEM601
|
0.0
|
39.8
|
1.0
|
ND
|
E:HEM601
|
2.0
|
39.8
|
1.0
|
NC
|
E:HEM601
|
2.0
|
39.8
|
1.0
|
NA
|
E:HEM601
|
2.0
|
39.8
|
1.0
|
NB
|
E:HEM601
|
2.0
|
39.8
|
1.0
|
HG
|
E:CYS52
|
2.4
|
43.2
|
1.0
|
C4B
|
E:HEM601
|
2.9
|
39.8
|
1.0
|
C1B
|
E:HEM601
|
3.0
|
39.8
|
1.0
|
C1C
|
E:HEM601
|
3.0
|
39.8
|
1.0
|
C1A
|
E:HEM601
|
3.0
|
39.8
|
1.0
|
C4D
|
E:HEM601
|
3.0
|
39.8
|
1.0
|
C4A
|
E:HEM601
|
3.0
|
39.8
|
1.0
|
C1D
|
E:HEM601
|
3.0
|
39.8
|
1.0
|
C4C
|
E:HEM601
|
3.0
|
39.8
|
1.0
|
CHC
|
E:HEM601
|
3.3
|
39.8
|
1.0
|
CHA
|
E:HEM601
|
3.3
|
39.8
|
1.0
|
CHB
|
E:HEM601
|
3.4
|
39.8
|
1.0
|
CHD
|
E:HEM601
|
3.4
|
39.8
|
1.0
|
SG
|
E:CYS52
|
3.4
|
43.2
|
1.0
|
HD2
|
E:PRO64
|
3.8
|
43.8
|
1.0
|
C3B
|
E:HEM601
|
4.1
|
39.8
|
1.0
|
C2B
|
E:HEM601
|
4.1
|
39.8
|
1.0
|
C2A
|
E:HEM601
|
4.2
|
39.8
|
1.0
|
C3A
|
E:HEM601
|
4.2
|
39.8
|
1.0
|
C2C
|
E:HEM601
|
4.2
|
39.8
|
1.0
|
C3D
|
E:HEM601
|
4.2
|
39.8
|
1.0
|
HB2
|
E:TRP54
|
4.2
|
41.8
|
1.0
|
C2D
|
E:HEM601
|
4.2
|
39.8
|
1.0
|
C3C
|
E:HEM601
|
4.2
|
39.8
|
1.0
|
HB2
|
E:CYS52
|
4.3
|
43.2
|
1.0
|
HHC
|
E:HEM601
|
4.3
|
39.8
|
1.0
|
HHA
|
E:HEM601
|
4.3
|
39.8
|
1.0
|
HHB
|
E:HEM601
|
4.4
|
39.8
|
1.0
|
HHD
|
E:HEM601
|
4.4
|
39.8
|
1.0
|
HA
|
E:CYS52
|
4.4
|
43.2
|
1.0
|
H
|
E:THR53
|
4.4
|
47.1
|
1.0
|
CB
|
E:CYS52
|
4.5
|
43.2
|
1.0
|
HD1
|
E:HIS65
|
4.6
|
37.1
|
1.0
|
CD
|
E:PRO64
|
4.7
|
43.8
|
1.0
|
HH12
|
E:ARG266
|
4.8
|
29.6
|
1.0
|
H
|
E:TRP54
|
4.8
|
41.8
|
1.0
|
ND1
|
E:HIS65
|
4.8
|
37.1
|
1.0
|
HG2
|
E:PRO64
|
4.8
|
43.8
|
1.0
|
HD3
|
E:PRO64
|
4.9
|
43.8
|
1.0
|
CA
|
E:CYS52
|
5.0
|
43.2
|
1.0
|
|
Iron binding site 6 out
of 10 in 8s5j
Go back to
Iron Binding Sites List in 8s5j
Iron binding site 6 out
of 10 in the Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe601
b:40.1
occ:1.00
|
FE
|
F:HEM601
|
0.0
|
40.1
|
1.0
|
ND
|
F:HEM601
|
2.0
|
40.1
|
1.0
|
NC
|
F:HEM601
|
2.0
|
40.1
|
1.0
|
NA
|
F:HEM601
|
2.0
|
40.1
|
1.0
|
NB
|
F:HEM601
|
2.0
|
40.1
|
1.0
|
C4B
|
F:HEM601
|
3.0
|
40.1
|
1.0
|
C1B
|
F:HEM601
|
3.0
|
40.1
|
1.0
|
C1A
|
F:HEM601
|
3.0
|
40.1
|
1.0
|
C1C
|
F:HEM601
|
3.0
|
40.1
|
1.0
|
C4D
|
F:HEM601
|
3.0
|
40.1
|
1.0
|
C4A
|
F:HEM601
|
3.0
|
40.1
|
1.0
|
C1D
|
F:HEM601
|
3.0
|
40.1
|
1.0
|
C4C
|
F:HEM601
|
3.0
|
40.1
|
1.0
|
CHC
|
F:HEM601
|
3.3
|
40.1
|
1.0
|
CHA
|
F:HEM601
|
3.4
|
40.1
|
1.0
|
CHB
|
F:HEM601
|
3.4
|
40.1
|
1.0
|
CHD
|
F:HEM601
|
3.4
|
40.1
|
1.0
|
SG
|
F:CYS52
|
3.5
|
43.6
|
1.0
|
HD2
|
F:PRO64
|
3.9
|
44.7
|
1.0
|
HB2
|
F:TRP54
|
3.9
|
41.4
|
1.0
|
C3B
|
F:HEM601
|
4.1
|
40.1
|
1.0
|
C2B
|
F:HEM601
|
4.1
|
40.1
|
1.0
|
C2A
|
F:HEM601
|
4.2
|
40.1
|
1.0
|
C3A
|
F:HEM601
|
4.2
|
40.1
|
1.0
|
HB2
|
F:CYS52
|
4.2
|
43.6
|
1.0
|
C3D
|
F:HEM601
|
4.2
|
40.1
|
1.0
|
C2C
|
F:HEM601
|
4.2
|
40.1
|
1.0
|
C2D
|
F:HEM601
|
4.2
|
40.1
|
1.0
|
C3C
|
F:HEM601
|
4.2
|
40.1
|
1.0
|
HHC
|
F:HEM601
|
4.3
|
40.1
|
1.0
|
HHA
|
F:HEM601
|
4.3
|
40.1
|
1.0
|
HHB
|
F:HEM601
|
4.3
|
40.1
|
1.0
|
H
|
F:THR53
|
4.4
|
46.7
|
1.0
|
HHD
|
F:HEM601
|
4.4
|
40.1
|
1.0
|
HA
|
F:CYS52
|
4.4
|
43.6
|
1.0
|
CB
|
F:CYS52
|
4.4
|
43.6
|
1.0
|
HG
|
F:CYS52
|
4.4
|
43.6
|
1.0
|
H
|
F:TRP54
|
4.4
|
41.4
|
1.0
|
HD2
|
F:HIS65
|
4.6
|
38.4
|
1.0
|
CD
|
F:PRO64
|
4.8
|
44.7
|
1.0
|
HH12
|
F:ARG266
|
4.8
|
29.9
|
1.0
|
CB
|
F:TRP54
|
4.8
|
41.4
|
1.0
|
HB3
|
F:TRP54
|
4.9
|
41.4
|
1.0
|
HG2
|
F:PRO64
|
4.9
|
44.7
|
1.0
|
CA
|
F:CYS52
|
4.9
|
43.6
|
1.0
|
HD3
|
F:PRO64
|
5.0
|
44.7
|
1.0
|
HB2
|
F:HIS65
|
5.0
|
38.4
|
1.0
|
|
Iron binding site 7 out
of 10 in 8s5j
Go back to
Iron Binding Sites List in 8s5j
Iron binding site 7 out
of 10 in the Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe601
b:39.9
occ:1.00
|
FE
|
G:HEM601
|
0.0
|
39.9
|
1.0
|
NC
|
G:HEM601
|
2.0
|
39.9
|
1.0
|
ND
|
G:HEM601
|
2.0
|
39.9
|
1.0
|
NA
|
G:HEM601
|
2.0
|
39.9
|
1.0
|
NB
|
G:HEM601
|
2.0
|
39.9
|
1.0
|
HG
|
G:CYS52
|
2.4
|
42.6
|
1.0
|
C4B
|
G:HEM601
|
3.0
|
39.9
|
1.0
|
C1B
|
G:HEM601
|
3.0
|
39.9
|
1.0
|
C1A
|
G:HEM601
|
3.0
|
39.9
|
1.0
|
C1C
|
G:HEM601
|
3.0
|
39.9
|
1.0
|
C4D
|
G:HEM601
|
3.0
|
39.9
|
1.0
|
C4A
|
G:HEM601
|
3.0
|
39.9
|
1.0
|
C1D
|
G:HEM601
|
3.0
|
39.9
|
1.0
|
C4C
|
G:HEM601
|
3.0
|
39.9
|
1.0
|
CHC
|
G:HEM601
|
3.3
|
39.9
|
1.0
|
CHA
|
G:HEM601
|
3.4
|
39.9
|
1.0
|
CHB
|
G:HEM601
|
3.4
|
39.9
|
1.0
|
CHD
|
G:HEM601
|
3.4
|
39.9
|
1.0
|
SG
|
G:CYS52
|
3.4
|
42.6
|
1.0
|
HD2
|
G:HIS65
|
3.6
|
37.4
|
1.0
|
HD2
|
G:PRO64
|
4.0
|
43.7
|
1.0
|
C3B
|
G:HEM601
|
4.1
|
39.9
|
1.0
|
C2B
|
G:HEM601
|
4.1
|
39.9
|
1.0
|
HB2
|
G:TRP54
|
4.2
|
40.5
|
1.0
|
C2A
|
G:HEM601
|
4.2
|
39.9
|
1.0
|
C3A
|
G:HEM601
|
4.2
|
39.9
|
1.0
|
HB2
|
G:CYS52
|
4.2
|
42.6
|
1.0
|
C3D
|
G:HEM601
|
4.2
|
39.9
|
1.0
|
C2C
|
G:HEM601
|
4.2
|
39.9
|
1.0
|
C2D
|
G:HEM601
|
4.2
|
39.9
|
1.0
|
C3C
|
G:HEM601
|
4.2
|
39.9
|
1.0
|
HHC
|
G:HEM601
|
4.3
|
39.9
|
1.0
|
HHA
|
G:HEM601
|
4.3
|
39.9
|
1.0
|
HA
|
G:CYS52
|
4.4
|
42.6
|
1.0
|
HHB
|
G:HEM601
|
4.4
|
39.9
|
1.0
|
HHD
|
G:HEM601
|
4.4
|
39.9
|
1.0
|
CD2
|
G:HIS65
|
4.4
|
37.4
|
1.0
|
CB
|
G:CYS52
|
4.4
|
42.6
|
1.0
|
H
|
G:THR53
|
4.4
|
46.0
|
1.0
|
HH12
|
G:ARG266
|
4.6
|
30.6
|
1.0
|
H
|
G:TRP54
|
4.7
|
40.5
|
1.0
|
HB2
|
G:HIS65
|
4.9
|
37.4
|
1.0
|
CD
|
G:PRO64
|
4.9
|
43.7
|
1.0
|
CA
|
G:CYS52
|
4.9
|
42.6
|
1.0
|
|
Iron binding site 8 out
of 10 in 8s5j
Go back to
Iron Binding Sites List in 8s5j
Iron binding site 8 out
of 10 in the Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe601
b:36.6
occ:1.00
|
FE
|
H:HEM601
|
0.0
|
36.6
|
1.0
|
NC
|
H:HEM601
|
2.0
|
36.6
|
1.0
|
NA
|
H:HEM601
|
2.0
|
36.6
|
1.0
|
ND
|
H:HEM601
|
2.0
|
36.6
|
1.0
|
NB
|
H:HEM601
|
2.0
|
36.6
|
1.0
|
C4B
|
H:HEM601
|
3.0
|
36.6
|
1.0
|
C4D
|
H:HEM601
|
3.0
|
36.6
|
1.0
|
C1A
|
H:HEM601
|
3.0
|
36.6
|
1.0
|
C1C
|
H:HEM601
|
3.0
|
36.6
|
1.0
|
C1D
|
H:HEM601
|
3.0
|
36.6
|
1.0
|
C1B
|
H:HEM601
|
3.0
|
36.6
|
1.0
|
C4A
|
H:HEM601
|
3.0
|
36.6
|
1.0
|
C4C
|
H:HEM601
|
3.0
|
36.6
|
1.0
|
CHC
|
H:HEM601
|
3.3
|
36.6
|
1.0
|
CHA
|
H:HEM601
|
3.3
|
36.6
|
1.0
|
SG
|
H:CYS52
|
3.3
|
39.4
|
1.0
|
CHB
|
H:HEM601
|
3.4
|
36.6
|
1.0
|
CHD
|
H:HEM601
|
3.4
|
36.6
|
1.0
|
HD2
|
H:PRO64
|
4.0
|
39.8
|
1.0
|
HB2
|
H:TRP54
|
4.0
|
36.5
|
1.0
|
HB2
|
H:CYS52
|
4.2
|
39.4
|
1.0
|
C3B
|
H:HEM601
|
4.2
|
36.6
|
1.0
|
C3D
|
H:HEM601
|
4.2
|
36.6
|
1.0
|
C2B
|
H:HEM601
|
4.2
|
36.6
|
1.0
|
C2D
|
H:HEM601
|
4.2
|
36.6
|
1.0
|
C2A
|
H:HEM601
|
4.2
|
36.6
|
1.0
|
C3A
|
H:HEM601
|
4.2
|
36.6
|
1.0
|
C2C
|
H:HEM601
|
4.2
|
36.6
|
1.0
|
C3C
|
H:HEM601
|
4.2
|
36.6
|
1.0
|
HHC
|
H:HEM601
|
4.3
|
36.6
|
1.0
|
HHA
|
H:HEM601
|
4.3
|
36.6
|
1.0
|
HG
|
H:CYS52
|
4.3
|
39.4
|
1.0
|
CB
|
H:CYS52
|
4.4
|
39.4
|
1.0
|
HHB
|
H:HEM601
|
4.4
|
36.6
|
1.0
|
HA
|
H:CYS52
|
4.4
|
39.4
|
1.0
|
HHD
|
H:HEM601
|
4.4
|
36.6
|
1.0
|
H
|
H:TRP54
|
4.5
|
36.5
|
1.0
|
H
|
H:THR53
|
4.5
|
41.8
|
1.0
|
HH12
|
H:ARG266
|
4.6
|
27.3
|
1.0
|
HB3
|
H:TRP54
|
4.8
|
36.5
|
1.0
|
CB
|
H:TRP54
|
4.9
|
36.5
|
1.0
|
CD
|
H:PRO64
|
4.9
|
39.8
|
1.0
|
CA
|
H:CYS52
|
4.9
|
39.4
|
1.0
|
HB2
|
H:HIS65
|
4.9
|
33.2
|
1.0
|
HG2
|
H:PRO64
|
5.0
|
39.8
|
1.0
|
|
Iron binding site 9 out
of 10 in 8s5j
Go back to
Iron Binding Sites List in 8s5j
Iron binding site 9 out
of 10 in the Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe601
b:45.3
occ:1.00
|
FE
|
I:HEM601
|
0.0
|
45.3
|
1.0
|
NC
|
I:HEM601
|
2.0
|
45.3
|
1.0
|
ND
|
I:HEM601
|
2.0
|
45.3
|
1.0
|
NA
|
I:HEM601
|
2.0
|
45.3
|
1.0
|
NB
|
I:HEM601
|
2.0
|
45.3
|
1.0
|
C4B
|
I:HEM601
|
3.0
|
45.3
|
1.0
|
C1B
|
I:HEM601
|
3.0
|
45.3
|
1.0
|
C1A
|
I:HEM601
|
3.0
|
45.3
|
1.0
|
C1C
|
I:HEM601
|
3.0
|
45.3
|
1.0
|
C4D
|
I:HEM601
|
3.0
|
45.3
|
1.0
|
C4A
|
I:HEM601
|
3.0
|
45.3
|
1.0
|
C1D
|
I:HEM601
|
3.0
|
45.3
|
1.0
|
C4C
|
I:HEM601
|
3.0
|
45.3
|
1.0
|
SG
|
I:CYS52
|
3.1
|
46.5
|
1.0
|
CHC
|
I:HEM601
|
3.3
|
45.3
|
1.0
|
CHA
|
I:HEM601
|
3.4
|
45.3
|
1.0
|
CHB
|
I:HEM601
|
3.4
|
45.3
|
1.0
|
CHD
|
I:HEM601
|
3.4
|
45.3
|
1.0
|
HG
|
I:CYS52
|
3.5
|
46.5
|
1.0
|
HD2
|
I:PRO64
|
3.9
|
49.6
|
1.0
|
HB2
|
I:TRP54
|
4.1
|
46.2
|
1.0
|
C3B
|
I:HEM601
|
4.1
|
45.3
|
1.0
|
C2B
|
I:HEM601
|
4.2
|
45.3
|
1.0
|
C2A
|
I:HEM601
|
4.2
|
45.3
|
1.0
|
C3A
|
I:HEM601
|
4.2
|
45.3
|
1.0
|
C3D
|
I:HEM601
|
4.2
|
45.3
|
1.0
|
C2C
|
I:HEM601
|
4.2
|
45.3
|
1.0
|
C2D
|
I:HEM601
|
4.2
|
45.3
|
1.0
|
HD2
|
I:HIS65
|
4.2
|
41.0
|
1.0
|
C3C
|
I:HEM601
|
4.2
|
45.3
|
1.0
|
HA
|
I:CYS52
|
4.3
|
46.5
|
1.0
|
HHC
|
I:HEM601
|
4.3
|
45.3
|
1.0
|
HHA
|
I:HEM601
|
4.3
|
45.3
|
1.0
|
HHB
|
I:HEM601
|
4.4
|
45.3
|
1.0
|
HHD
|
I:HEM601
|
4.4
|
45.3
|
1.0
|
H
|
I:THR53
|
4.5
|
51.4
|
1.0
|
CB
|
I:CYS52
|
4.5
|
46.5
|
1.0
|
H
|
I:TRP54
|
4.6
|
46.2
|
1.0
|
HB2
|
I:CYS52
|
4.7
|
46.5
|
1.0
|
CD2
|
I:HIS65
|
4.8
|
41.0
|
1.0
|
HH12
|
I:ARG266
|
4.8
|
32.5
|
1.0
|
CD
|
I:PRO64
|
4.8
|
49.6
|
1.0
|
HB2
|
I:HIS65
|
4.9
|
41.0
|
1.0
|
CA
|
I:CYS52
|
4.9
|
46.5
|
1.0
|
HG2
|
I:PRO64
|
4.9
|
49.6
|
1.0
|
HB3
|
I:TRP54
|
5.0
|
46.2
|
1.0
|
CB
|
I:TRP54
|
5.0
|
46.2
|
1.0
|
|
Iron binding site 10 out
of 10 in 8s5j
Go back to
Iron Binding Sites List in 8s5j
Iron binding site 10 out
of 10 in the Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Full-Length Human Cystathionine Beta-Synthase, Basal State, Helical Reconstruction within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe601
b:37.3
occ:1.00
|
FE
|
J:HEM601
|
0.0
|
37.3
|
1.0
|
ND
|
J:HEM601
|
2.0
|
37.3
|
1.0
|
NC
|
J:HEM601
|
2.0
|
37.3
|
1.0
|
NA
|
J:HEM601
|
2.0
|
37.3
|
1.0
|
NB
|
J:HEM601
|
2.0
|
37.3
|
1.0
|
C4B
|
J:HEM601
|
3.0
|
37.3
|
1.0
|
C1B
|
J:HEM601
|
3.0
|
37.3
|
1.0
|
C1A
|
J:HEM601
|
3.0
|
37.3
|
1.0
|
C4A
|
J:HEM601
|
3.0
|
37.3
|
1.0
|
C1C
|
J:HEM601
|
3.0
|
37.3
|
1.0
|
C4D
|
J:HEM601
|
3.0
|
37.3
|
1.0
|
C1D
|
J:HEM601
|
3.0
|
37.3
|
1.0
|
C4C
|
J:HEM601
|
3.0
|
37.3
|
1.0
|
SG
|
J:CYS52
|
3.2
|
39.7
|
1.0
|
CHC
|
J:HEM601
|
3.3
|
37.3
|
1.0
|
CHB
|
J:HEM601
|
3.4
|
37.3
|
1.0
|
CHA
|
J:HEM601
|
3.4
|
37.3
|
1.0
|
CHD
|
J:HEM601
|
3.4
|
37.3
|
1.0
|
HB2
|
J:TRP54
|
3.9
|
36.8
|
1.0
|
HD2
|
J:PRO64
|
4.0
|
39.5
|
1.0
|
HB2
|
J:CYS52
|
4.0
|
39.7
|
1.0
|
HD2
|
J:HIS65
|
4.0
|
32.7
|
1.0
|
HG
|
J:CYS52
|
4.1
|
39.7
|
1.0
|
C3B
|
J:HEM601
|
4.1
|
37.3
|
1.0
|
C2B
|
J:HEM601
|
4.1
|
37.3
|
1.0
|
C2A
|
J:HEM601
|
4.2
|
37.3
|
1.0
|
C3A
|
J:HEM601
|
4.2
|
37.3
|
1.0
|
CB
|
J:CYS52
|
4.2
|
39.7
|
1.0
|
C2C
|
J:HEM601
|
4.2
|
37.3
|
1.0
|
C3D
|
J:HEM601
|
4.2
|
37.3
|
1.0
|
C2D
|
J:HEM601
|
4.2
|
37.3
|
1.0
|
C3C
|
J:HEM601
|
4.2
|
37.3
|
1.0
|
HHC
|
J:HEM601
|
4.3
|
37.3
|
1.0
|
HHB
|
J:HEM601
|
4.3
|
37.3
|
1.0
|
HHA
|
J:HEM601
|
4.3
|
37.3
|
1.0
|
HHD
|
J:HEM601
|
4.4
|
37.3
|
1.0
|
HA
|
J:CYS52
|
4.4
|
39.7
|
1.0
|
H
|
J:TRP54
|
4.4
|
36.8
|
1.0
|
H
|
J:THR53
|
4.4
|
42.7
|
1.0
|
HH12
|
J:ARG266
|
4.6
|
27.2
|
1.0
|
CD2
|
J:HIS65
|
4.7
|
32.7
|
1.0
|
HB3
|
J:TRP54
|
4.7
|
36.8
|
1.0
|
CB
|
J:TRP54
|
4.7
|
36.8
|
1.0
|
CA
|
J:CYS52
|
4.8
|
39.7
|
1.0
|
CD
|
J:PRO64
|
4.9
|
39.5
|
1.0
|
HG2
|
J:PRO64
|
5.0
|
39.5
|
1.0
|
|
Reference:
T.J.Mccorvie,
D.Adamoski,
R.A.C.Machado,
J.Tang,
H.J.Bailey,
D.S.M.Ferreira,
C.Strain-Damerell,
A.Basle,
A.L.B.Ambrosio,
S.M.G.Dias,
W.W.Yue.
Architecture and Regulation of Filamentous Human Cystathionine Beta-Synthase. Nat Commun V. 15 2931 2024.
ISSN: ESSN 2041-1723
PubMed: 38575566
DOI: 10.1038/S41467-024-46864-X
Page generated: Sat Aug 10 17:46:14 2024
|