Iron in PDB 8sbi: Crystal Structure of Human Sterol 14 Alpha-Demethylase (CYP51) in the Ligand-Free State

Enzymatic activity of Crystal Structure of Human Sterol 14 Alpha-Demethylase (CYP51) in the Ligand-Free State

All present enzymatic activity of Crystal Structure of Human Sterol 14 Alpha-Demethylase (CYP51) in the Ligand-Free State:
1.14.14.154;

Protein crystallography data

The structure of Crystal Structure of Human Sterol 14 Alpha-Demethylase (CYP51) in the Ligand-Free State, PDB code: 8sbi was solved by T.Y.Hargrove, Z.Wawrzak, G.I.Lepesheva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.01 / 2.73
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 143.81, 55.64, 103.07, 90, 90, 90
R / Rfree (%) 23 / 24.6

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Human Sterol 14 Alpha-Demethylase (CYP51) in the Ligand-Free State (pdb code 8sbi). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Human Sterol 14 Alpha-Demethylase (CYP51) in the Ligand-Free State, PDB code: 8sbi:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8sbi

Go back to Iron Binding Sites List in 8sbi
Iron binding site 1 out of 2 in the Crystal Structure of Human Sterol 14 Alpha-Demethylase (CYP51) in the Ligand-Free State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Human Sterol 14 Alpha-Demethylase (CYP51) in the Ligand-Free State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:58.2
occ:1.00
FE A:HEM601 0.0 58.2 1.0
ND A:HEM601 2.0 49.8 1.0
NA A:HEM601 2.0 59.2 1.0
NC A:HEM601 2.1 55.8 1.0
NB A:HEM601 2.1 45.9 1.0
SG A:CYS449 2.3 68.8 1.0
C1D A:HEM601 3.0 47.4 1.0
C4C A:HEM601 3.0 45.9 1.0
C4D A:HEM601 3.0 52.1 1.0
C1A A:HEM601 3.0 46.6 1.0
C1B A:HEM601 3.1 41.4 1.0
C4A A:HEM601 3.1 46.7 1.0
C4B A:HEM601 3.1 42.1 1.0
C1C A:HEM601 3.1 42.1 1.0
CHD A:HEM601 3.4 46.7 1.0
CHA A:HEM601 3.4 50.3 1.0
CHB A:HEM601 3.4 45.5 1.0
CHC A:HEM601 3.5 39.8 1.0
CB A:CYS449 3.6 52.4 1.0
C2D A:HEM601 4.2 50.5 1.0
C3C A:HEM601 4.2 39.3 1.0
C2A A:HEM601 4.2 52.5 1.0
C2C A:HEM601 4.3 39.7 1.0
C3A A:HEM601 4.3 48.4 1.0
O A:ALA311 4.3 36.7 1.0
C3D A:HEM601 4.3 54.3 1.0
C2B A:HEM601 4.3 37.8 1.0
C3B A:HEM601 4.3 39.4 1.0
CA A:CYS449 4.4 55.1 1.0
C A:ALA311 5.0 38.8 1.0

Iron binding site 2 out of 2 in 8sbi

Go back to Iron Binding Sites List in 8sbi
Iron binding site 2 out of 2 in the Crystal Structure of Human Sterol 14 Alpha-Demethylase (CYP51) in the Ligand-Free State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Human Sterol 14 Alpha-Demethylase (CYP51) in the Ligand-Free State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe601

b:42.3
occ:1.00
FE B:HEM601 0.0 42.3 1.0
ND B:HEM601 2.0 49.1 1.0
NA B:HEM601 2.0 46.3 1.0
NC B:HEM601 2.0 45.7 1.0
NB B:HEM601 2.1 43.4 1.0
SG B:CYS449 2.3 44.5 1.0
C1D B:HEM601 3.0 48.7 1.0
C4D B:HEM601 3.0 52.1 1.0
C4C B:HEM601 3.0 43.8 1.0
C1A B:HEM601 3.0 49.0 1.0
C4B B:HEM601 3.1 43.3 1.0
C1C B:HEM601 3.1 44.9 1.0
C1B B:HEM601 3.1 44.5 1.0
C4A B:HEM601 3.1 42.4 1.0
CHD B:HEM601 3.4 49.1 1.0
CHA B:HEM601 3.4 51.7 1.0
CHC B:HEM601 3.4 42.8 1.0
CHB B:HEM601 3.5 43.9 1.0
CB B:CYS449 3.5 50.0 1.0
O B:ALA311 4.0 51.7 1.0
C2D B:HEM601 4.2 53.0 1.0
C3C B:HEM601 4.2 44.9 1.0
C2C B:HEM601 4.2 44.6 1.0
C3D B:HEM601 4.2 56.4 1.0
C3A B:HEM601 4.3 48.6 1.0
C2A B:HEM601 4.3 52.6 1.0
C2B B:HEM601 4.3 48.8 1.0
C3B B:HEM601 4.3 44.2 1.0
CA B:CYS449 4.5 53.8 1.0
C B:ALA311 4.8 46.0 1.0

Reference:

T.Y.Hargrove, Z.Wawrzak, G.I.Lepesheva. Structural Dynamics of Sterol 14 Alpha Demethylases Upon Catalysis To Be Published.
Page generated: Sat Aug 10 17:46:11 2024

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