Iron in PDB 8tls: Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin C51S C71S Y108A Variant

Protein crystallography data

The structure of Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin C51S C71S Y108A Variant, PDB code: 8tls was solved by T.D.Schultz, J.E.Martinez, M.A.Siegler, J.L.Schlessman, J.T.J.Lecomte, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.90 / 1.70
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 66.718, 66.718, 125.018, 90, 90, 90
R / Rfree (%) 18.9 / 21.4

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin C51S C71S Y108A Variant (pdb code 8tls). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin C51S C71S Y108A Variant, PDB code: 8tls:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8tls

Go back to Iron Binding Sites List in 8tls
Iron binding site 1 out of 2 in the Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin C51S C71S Y108A Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin C51S C71S Y108A Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:3.1
occ:1.00
FE A:HEM201 0.0 3.1 1.0
ND A:HEM201 1.9 5.2 1.0
NA A:HEM201 2.0 3.4 1.0
NB A:HEM201 2.1 2.9 1.0
NC A:HEM201 2.1 2.2 1.0
NE2 A:HIS69 2.1 3.8 1.0
C A:CYN202 2.2 2.2 1.0
C1D A:HEM201 2.9 5.3 1.0
C4D A:HEM201 2.9 6.6 1.0
C1A A:HEM201 3.0 3.6 1.0
C4C A:HEM201 3.0 3.7 1.0
C4A A:HEM201 3.0 2.7 1.0
C4B A:HEM201 3.0 2.7 1.0
C1B A:HEM201 3.0 4.2 1.0
CE1 A:HIS69 3.1 3.2 1.0
C1C A:HEM201 3.1 3.3 1.0
CD2 A:HIS69 3.1 2.8 1.0
CHA A:HEM201 3.3 6.1 1.0
N A:CYN202 3.3 7.6 1.0
CHD A:HEM201 3.4 5.4 1.0
CHB A:HEM201 3.4 2.9 1.0
CHC A:HEM201 3.4 3.0 1.0
C2D A:HEM201 4.2 6.5 1.0
C3D A:HEM201 4.2 7.2 1.0
ND1 A:HIS69 4.2 3.2 1.0
C2A A:HEM201 4.2 4.3 1.0
C3A A:HEM201 4.2 2.5 1.0
CG A:HIS69 4.2 2.4 1.0
C3C A:HEM201 4.2 3.2 1.0
C2B A:HEM201 4.3 3.7 1.0
C3B A:HEM201 4.3 2.7 1.0
C2C A:HEM201 4.3 1.6 1.0
OH A:TYR34 4.5 5.9 1.0

Iron binding site 2 out of 2 in 8tls

Go back to Iron Binding Sites List in 8tls
Iron binding site 2 out of 2 in the Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin C51S C71S Y108A Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin C51S C71S Y108A Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:5.7
occ:1.00
FE B:HEM201 0.0 5.7 1.0
ND B:HEM201 2.0 4.7 1.0
NA B:HEM201 2.0 4.5 1.0
NB B:HEM201 2.0 6.8 1.0
NC B:HEM201 2.0 2.3 1.0
NE2 B:HIS69 2.1 4.4 1.0
C B:CYN202 2.2 4.4 1.0
C1D B:HEM201 3.0 7.6 1.0
C4D B:HEM201 3.0 7.4 1.0
C4C B:HEM201 3.0 4.1 1.0
C1A B:HEM201 3.0 7.1 1.0
C4A B:HEM201 3.0 6.4 1.0
C1B B:HEM201 3.0 5.1 1.0
CD2 B:HIS69 3.0 4.6 1.0
CE1 B:HIS69 3.0 4.7 1.0
C4B B:HEM201 3.1 4.3 1.0
C1C B:HEM201 3.1 4.4 1.0
N B:CYN202 3.3 7.4 1.0
CHD B:HEM201 3.3 5.7 1.0
CHA B:HEM201 3.4 6.9 1.0
CHB B:HEM201 3.4 5.0 1.0
CHC B:HEM201 3.5 4.3 1.0
ND1 B:HIS69 4.2 3.4 1.0
CG B:HIS69 4.2 4.0 1.0
C2D B:HEM201 4.2 6.2 1.0
C3D B:HEM201 4.2 10.2 1.0
C3C B:HEM201 4.2 2.6 1.0
C3A B:HEM201 4.2 8.1 1.0
C2A B:HEM201 4.2 7.8 1.0
C2B B:HEM201 4.2 5.4 1.0
C3B B:HEM201 4.3 5.0 1.0
C2C B:HEM201 4.3 2.3 1.0
OH B:TYR34 4.5 7.2 1.0
O B:HOH373 4.9 9.7 1.0

Reference:

T.D.Schultz, J.E.Martinez, M.A.Siegler, J.L.Schlessman, J.T.J.Lecomte. Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin C51S C71S Y108A Variant To Be Published.
Page generated: Sat Aug 10 18:20:05 2024

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