Iron in PDB 8u19: Crystal Structure of Syoa Bound to Syringol

Enzymatic activity of Crystal Structure of Syoa Bound to Syringol

All present enzymatic activity of Crystal Structure of Syoa Bound to Syringol:
1.14.14.1;

Protein crystallography data

The structure of Crystal Structure of Syoa Bound to Syringol, PDB code: 8u19 was solved by A.C.Harlington, K.E.Shearwin, S.G.Bell, F.Whelan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.15 / 1.26
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 57.851, 62.353, 58.71, 90, 103.06, 90
R / Rfree (%) 14.6 / 18.2

Other elements in 8u19:

The structure of Crystal Structure of Syoa Bound to Syringol also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Syoa Bound to Syringol (pdb code 8u19). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Syoa Bound to Syringol, PDB code: 8u19:

Iron binding site 1 out of 1 in 8u19

Go back to Iron Binding Sites List in 8u19
Iron binding site 1 out of 1 in the Crystal Structure of Syoa Bound to Syringol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Syoa Bound to Syringol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:12.1
occ:1.00
FE A:HEM501 0.0 12.1 1.0
NA A:HEM501 2.0 11.9 1.0
NC A:HEM501 2.0 12.9 1.0
NB A:HEM501 2.0 11.9 1.0
ND A:HEM501 2.1 12.3 1.0
SG A:CYS360 2.3 12.7 1.0
C1A A:HEM501 3.0 11.2 1.0
C4A A:HEM501 3.0 10.7 1.0
C4C A:HEM501 3.0 12.8 1.0
C4B A:HEM501 3.1 11.6 1.0
C1B A:HEM501 3.1 11.3 1.0
C1C A:HEM501 3.1 12.0 1.0
C4D A:HEM501 3.1 11.7 1.0
C1D A:HEM501 3.1 12.8 1.0
CB A:CYS360 3.3 12.0 1.0
CHD A:HEM501 3.4 12.7 1.0
CHC A:HEM501 3.4 11.6 1.0
CHB A:HEM501 3.4 10.7 1.0
CHA A:HEM501 3.4 11.6 1.0
C8 A:3DM502 3.6 15.1 1.0
CA A:CYS360 4.0 12.1 1.0
C3B A:HEM501 4.3 12.2 1.0
C3A A:HEM501 4.3 11.4 1.0
C3C A:HEM501 4.3 13.9 1.0
C2B A:HEM501 4.3 11.7 1.0
C2C A:HEM501 4.3 13.3 1.0
C2A A:HEM501 4.3 11.3 1.0
C3D A:HEM501 4.3 12.1 1.0
C2D A:HEM501 4.3 12.8 1.0
N A:GLY362 4.5 13.4 1.0
C A:CYS360 4.6 12.5 1.0
N A:SER361 4.7 12.8 1.0
O3 A:3DM502 4.9 14.1 1.0
CA A:GLY362 5.0 14.2 1.0

Reference:

A.C.Harlington, K.E.Shearwin, S.G.Bell, F.Whelan. Structural Insights Into the S-Lignin O-Demethylase Syoa To Be Published.
Page generated: Sat Aug 10 18:21:58 2024

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