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Iron in PDB 8uco: Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine

Other elements in 8uco:

The structure of Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine also contains other interesting chemical elements:

Copper (Cu) 3 atoms
Zinc (Zn) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine (pdb code 8uco). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine, PDB code: 8uco:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8uco

Go back to Iron Binding Sites List in 8uco
Iron binding site 1 out of 2 in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe602

b:44.5
occ:1.00
FE a:HEA602 0.0 44.5 1.0
NA a:HEA602 1.9 44.5 1.0
NB a:HEA602 1.9 44.5 1.0
ND a:HEA602 1.9 44.5 1.0
NC a:HEA602 1.9 44.5 1.0
NE2 a:HIS380 2.7 42.9 1.0
C1D a:HEA602 2.9 44.5 1.0
C1B a:HEA602 2.9 44.5 1.0
C4C a:HEA602 2.9 44.5 1.0
C4A a:HEA602 2.9 44.5 1.0
C4B a:HEA602 3.0 44.5 1.0
C1A a:HEA602 3.0 44.5 1.0
C4D a:HEA602 3.0 44.5 1.0
C1C a:HEA602 3.0 44.5 1.0
CHD a:HEA602 3.1 44.5 1.0
CHB a:HEA602 3.2 44.5 1.0
CE1 a:HIS380 3.2 42.9 1.0
NE2 a:HIS64 3.2 42.2 1.0
CHC a:HEA602 3.3 44.5 1.0
CHA a:HEA602 3.4 44.5 1.0
CD2 a:HIS380 3.5 42.9 1.0
CD2 a:HIS64 4.0 42.2 1.0
ND1 a:HIS380 4.1 42.9 1.0
C3C a:HEA602 4.1 44.5 1.0
C3A a:HEA602 4.1 44.5 1.0
C2D a:HEA602 4.1 44.5 1.0
C2B a:HEA602 4.1 44.5 1.0
C2A a:HEA602 4.1 44.5 1.0
C2C a:HEA602 4.1 44.5 1.0
C3B a:HEA602 4.2 44.5 1.0
C3D a:HEA602 4.2 44.5 1.0
CG a:HIS380 4.3 42.9 1.0
CE1 a:HIS64 4.3 42.2 1.0
CE1 a:PHE379 4.8 43.2 1.0

Iron binding site 2 out of 2 in 8uco

Go back to Iron Binding Sites List in 8uco
Iron binding site 2 out of 2 in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe603

b:46.0
occ:1.00
FE a:HEA603 0.0 46.0 1.0
ND a:HEA603 1.9 46.0 1.0
NA a:HEA603 1.9 46.0 1.0
NB a:HEA603 1.9 46.0 1.0
NC a:HEA603 1.9 46.0 1.0
C4D a:HEA603 2.9 46.0 1.0
C4B a:HEA603 2.9 46.0 1.0
C1C a:HEA603 2.9 46.0 1.0
C1A a:HEA603 2.9 46.0 1.0
C1D a:HEA603 3.0 46.0 1.0
C1B a:HEA603 3.0 46.0 1.0
C4A a:HEA603 3.0 46.0 1.0
C4C a:HEA603 3.0 46.0 1.0
CHC a:HEA603 3.1 46.0 1.0
CHA a:HEA603 3.1 46.0 1.0
CHD a:HEA603 3.4 46.0 1.0
CHB a:HEA603 3.4 46.0 1.0
CU a:CU601 3.7 46.8 1.0
NE2 a:HIS378 3.8 43.7 1.0
C2C a:HEA603 4.1 46.0 1.0
CE1 a:HIS243 4.1 42.4 1.0
C2A a:HEA603 4.1 46.0 1.0
C3C a:HEA603 4.2 46.0 1.0
C3A a:HEA603 4.2 46.0 1.0
C3D a:HEA603 4.2 46.0 1.0
C3B a:HEA603 4.2 46.0 1.0
C2D a:HEA603 4.2 46.0 1.0
C2B a:HEA603 4.2 46.0 1.0
CE1 a:HIS378 4.6 43.7 1.0
CG2 a:VAL246 4.7 41.8 1.0
ND1 a:HIS243 4.7 42.4 1.0
CD2 a:HIS378 4.7 43.7 1.0

Reference:

J.Ye, B.Liu, W.Li. Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamin To Be Published.
Page generated: Thu Oct 31 20:46:03 2024

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