Atomistry » Iron » PDB 8tww-8umh » 8uco
Atomistry »
  Iron »
    PDB 8tww-8umh »
      8uco »

Iron in PDB 8uco: Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine

Other elements in 8uco:

The structure of Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine also contains other interesting chemical elements:

Copper (Cu) 3 atoms
Zinc (Zn) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine (pdb code 8uco). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine, PDB code: 8uco:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8uco

Go back to Iron Binding Sites List in 8uco
Iron binding site 1 out of 2 in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe602

b:44.5
occ:1.00
FE a:HEA602 0.0 44.5 1.0
NA a:HEA602 1.9 44.5 1.0
NB a:HEA602 1.9 44.5 1.0
ND a:HEA602 1.9 44.5 1.0
NC a:HEA602 1.9 44.5 1.0
NE2 a:HIS380 2.7 42.9 1.0
C1D a:HEA602 2.9 44.5 1.0
C1B a:HEA602 2.9 44.5 1.0
C4C a:HEA602 2.9 44.5 1.0
C4A a:HEA602 2.9 44.5 1.0
C4B a:HEA602 3.0 44.5 1.0
C1A a:HEA602 3.0 44.5 1.0
C4D a:HEA602 3.0 44.5 1.0
C1C a:HEA602 3.0 44.5 1.0
CHD a:HEA602 3.1 44.5 1.0
CHB a:HEA602 3.2 44.5 1.0
CE1 a:HIS380 3.2 42.9 1.0
NE2 a:HIS64 3.2 42.2 1.0
CHC a:HEA602 3.3 44.5 1.0
CHA a:HEA602 3.4 44.5 1.0
CD2 a:HIS380 3.5 42.9 1.0
CD2 a:HIS64 4.0 42.2 1.0
ND1 a:HIS380 4.1 42.9 1.0
C3C a:HEA602 4.1 44.5 1.0
C3A a:HEA602 4.1 44.5 1.0
C2D a:HEA602 4.1 44.5 1.0
C2B a:HEA602 4.1 44.5 1.0
C2A a:HEA602 4.1 44.5 1.0
C2C a:HEA602 4.1 44.5 1.0
C3B a:HEA602 4.2 44.5 1.0
C3D a:HEA602 4.2 44.5 1.0
CG a:HIS380 4.3 42.9 1.0
CE1 a:HIS64 4.3 42.2 1.0
CE1 a:PHE379 4.8 43.2 1.0

Iron binding site 2 out of 2 in 8uco

Go back to Iron Binding Sites List in 8uco
Iron binding site 2 out of 2 in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe603

b:46.0
occ:1.00
FE a:HEA603 0.0 46.0 1.0
ND a:HEA603 1.9 46.0 1.0
NA a:HEA603 1.9 46.0 1.0
NB a:HEA603 1.9 46.0 1.0
NC a:HEA603 1.9 46.0 1.0
C4D a:HEA603 2.9 46.0 1.0
C4B a:HEA603 2.9 46.0 1.0
C1C a:HEA603 2.9 46.0 1.0
C1A a:HEA603 2.9 46.0 1.0
C1D a:HEA603 3.0 46.0 1.0
C1B a:HEA603 3.0 46.0 1.0
C4A a:HEA603 3.0 46.0 1.0
C4C a:HEA603 3.0 46.0 1.0
CHC a:HEA603 3.1 46.0 1.0
CHA a:HEA603 3.1 46.0 1.0
CHD a:HEA603 3.4 46.0 1.0
CHB a:HEA603 3.4 46.0 1.0
CU a:CU601 3.7 46.8 1.0
NE2 a:HIS378 3.8 43.7 1.0
C2C a:HEA603 4.1 46.0 1.0
CE1 a:HIS243 4.1 42.4 1.0
C2A a:HEA603 4.1 46.0 1.0
C3C a:HEA603 4.2 46.0 1.0
C3A a:HEA603 4.2 46.0 1.0
C3D a:HEA603 4.2 46.0 1.0
C3B a:HEA603 4.2 46.0 1.0
C2D a:HEA603 4.2 46.0 1.0
C2B a:HEA603 4.2 46.0 1.0
CE1 a:HIS378 4.6 43.7 1.0
CG2 a:VAL246 4.7 41.8 1.0
ND1 a:HIS243 4.7 42.4 1.0
CD2 a:HIS378 4.7 43.7 1.0

Reference:

J.Ye, B.Liu, W.Li. Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamin To Be Published.
Page generated: Thu Oct 31 20:46:03 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy