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Iron in PDB 8uem: The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis

Other elements in 8uem:

The structure of The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis also contains other interesting chemical elements:

Molybdenum (Mo) 2 atoms
Copper (Cu) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis (pdb code 8uem). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis, PDB code: 8uem:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 8uem

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Iron binding site 1 out of 8 in the The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:22.6
occ:1.00
 FE1 C:FES201 0.0 22.6 1.0
S1 C:FES201 2.2 10.6 1.0
S2 C:FES201 2.2 8.1 1.0
SG C:CYS47 2.3 9.4 1.0
SG C:CYS59 2.3 5.4 1.0
FE2 C:FES201 2.7 22.1 1.0
CB C:CYS59 2.9 4.0 1.0
CB C:CYS47 3.3 7.4 1.0
O C:HOH303 3.8 9.4 1.0
N C:CYS59 4.1 7.1 1.0
CA C:CYS59 4.1 9.4 1.0
CB C:LYS57 4.2 10.2 1.0
N C:CYS47 4.3 4.3 1.0
SG C:CYS39 4.4 12.5 1.0
CA C:SER42 4.5 9.0 1.0
CA C:CYS47 4.5 4.5 1.0
SG C:CYS44 4.5 9.5 1.0
N C:GLY45 4.6 8.4 1.0
CD C:LYS57 4.7 9.6 1.0
CA C:LYS57 4.8 7.0 1.0
CE B:MET1 4.8 10.9 1.0
C C:CYS59 4.9 6.0 1.0
N C:THR46 4.9 2.5 1.0
CA C:GLY45 4.9 6.8 1.0
CG C:LYS57 4.9 10.1 1.0
OG1 C:THR60 4.9 11.1 1.0
C C:LYS57 5.0 8.9 1.0

Iron binding site 2 out of 8 in 8uem

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Iron binding site 2 out of 8 in the The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:22.1
occ:1.00
 FE2 C:FES201 0.0 22.1 1.0
S2 C:FES201 2.2 8.1 1.0
S1 C:FES201 2.2 10.6 1.0
SG C:CYS39 2.3 12.5 1.0
SG C:CYS44 2.3 9.5 1.0
FE1 C:FES201 2.7 22.6 1.0
CB C:CYS39 3.3 5.8 1.0
N C:CYS44 3.4 8.8 1.0
N C:CYS39 3.5 7.5 1.0
CB C:CYS44 3.5 5.9 1.0
O C:HOH303 3.7 9.4 1.0
N C:GLY45 3.7 8.4 1.0
CA C:CYS39 3.8 8.6 1.0
CA C:CYS44 3.9 9.0 1.0
O C:CYS39 4.0 9.5 1.0
N C:GLY38 4.0 6.0 1.0
N C:ASN43 4.1 10.0 1.0
C C:CYS39 4.1 8.8 1.0
C C:GLY38 4.2 9.6 1.0
C C:CYS44 4.2 7.6 1.0
SG C:CYS59 4.3 5.4 1.0
OG1 C:THR46 4.3 9.2 1.0
C C:ASN43 4.5 8.8 1.0
N C:THR46 4.5 2.5 1.0
CA C:SER42 4.5 9.0 1.0
C C:SER42 4.6 8.1 1.0
CA C:GLY38 4.6 6.0 1.0
SG C:CYS47 4.6 9.4 1.0
N C:SER42 4.7 10.4 1.0
CA C:GLY45 4.7 6.8 1.0
CA C:ASN43 4.9 9.5 1.0

Iron binding site 3 out of 8 in 8uem

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Iron binding site 3 out of 8 in the The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:23.7
occ:1.00
 FE1 C:FES202 0.0 23.7 1.0
S2 C:FES202 2.2 0.0 1.0
S1 C:FES202 2.2 6.3 1.0
SG C:CYS133 2.3 7.4 1.0
SG C:CYS101 2.4 8.5 1.0
FE2 C:FES202 2.8 22.1 1.0
CB C:CYS133 3.2 2.7 1.0
CB C:CYS101 3.4 3.3 1.0
CA C:CYS133 3.5 6.5 1.0
N C:CYS101 4.1 6.7 1.0
N C:ARG134 4.1 7.0 1.0
O C:HOH320 4.2 10.9 1.0
C C:CYS133 4.2 3.4 1.0
N C:CYS135 4.3 8.3 1.0
CA C:CYS101 4.3 9.0 1.0
CB C:CYS135 4.4 6.7 1.0
CG2 C:THR136 4.6 5.2 1.0
SG C:CYS98 4.7 5.2 1.0
SG C:CYS135 4.7 8.2 1.0
O C:ILE132 4.7 10.2 1.0
N C:CYS133 4.8 6.0 1.0
N C:THR102 4.8 5.4 1.0
C C:CYS101 4.9 2.3 1.0
N C:PHE100 4.9 5.3 1.0
CA C:CYS135 4.9 6.3 1.0
N C:THR136 5.0 4.1 1.0
OG1 C:THR136 5.0 5.1 1.0

Iron binding site 4 out of 8 in 8uem

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Iron binding site 4 out of 8 in the The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:22.1
occ:1.00
 FE2 C:FES202 0.0 22.1 1.0
S2 C:FES202 2.2 0.0 1.0
S1 C:FES202 2.2 6.3 1.0
SG C:CYS98 2.2 5.2 1.0
SG C:CYS135 2.5 8.2 1.0
FE1 C:FES202 2.8 23.7 1.0
CB C:CYS135 3.1 6.7 1.0
CB C:CYS98 3.3 6.0 1.0
O A:HOH1121 3.6 30.0 1.0
N C:CYS98 3.6 4.3 1.0
CA C:CYS98 3.8 4.8 1.0
N C:GLY99 3.9 3.5 1.0
N C:CYS135 4.1 8.3 1.0
C C:CYS98 4.2 3.2 1.0
N C:PHE100 4.2 5.3 1.0
CA C:CYS135 4.3 6.3 1.0
SG C:CYS133 4.4 7.4 1.0
C C:GLN97 4.7 4.2 1.0
CB C:PHE100 4.8 5.3 1.0
N C:GLN97 4.8 2.3 1.0
N C:ARG134 4.8 7.0 1.0
SG C:CYS101 4.9 8.5 1.0
N C:CYS101 4.9 6.7 1.0
CA C:GLY99 4.9 5.0 1.0
CB C:GLN97 4.9 4.8 1.0
N A:GLY262 5.0 9.0 1.0
O A:GLY261 5.0 7.7 1.0

Iron binding site 5 out of 8 in 8uem

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Iron binding site 5 out of 8 in the The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe201

b:22.3
occ:1.00
 FE1 F:FES201 0.0 22.3 1.0
S2 F:FES201 2.2 9.8 1.0
S1 F:FES201 2.2 8.1 1.0
SG F:CYS47 2.3 9.2 1.0
SG F:CYS59 2.3 6.2 1.0
FE2 F:FES201 2.7 22.2 1.0
CB F:CYS59 2.9 3.3 1.0
CB F:CYS47 3.3 7.3 1.0
O F:HOH303 3.8 8.9 1.0
N F:CYS59 4.1 7.7 1.0
CA F:CYS59 4.1 9.3 1.0
CB F:LYS57 4.2 10.5 1.0
N F:CYS47 4.2 3.9 1.0
SG F:CYS39 4.3 12.5 1.0
CA F:CYS47 4.4 4.7 1.0
CA F:SER42 4.5 9.7 1.0
SG F:CYS44 4.5 9.3 1.0
N F:GLY45 4.6 8.0 1.0
CD F:LYS57 4.6 10.4 1.0
CG F:LYS57 4.8 9.2 1.0
CA F:LYS57 4.8 7.0 1.0
CE E:MET1 4.8 11.0 1.0
C F:CYS59 4.9 6.1 1.0
CA F:GLY45 4.9 7.0 1.0
OG1 F:THR60 4.9 11.7 1.0
N F:THR46 5.0 1.8 1.0
C F:LYS57 5.0 8.4 1.0

Iron binding site 6 out of 8 in 8uem

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Iron binding site 6 out of 8 in the The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe201

b:22.2
occ:1.00
 FE2 F:FES201 0.0 22.2 1.0
S1 F:FES201 2.2 8.1 1.0
S2 F:FES201 2.2 9.8 1.0
SG F:CYS39 2.3 12.5 1.0
SG F:CYS44 2.3 9.3 1.0
FE1 F:FES201 2.7 22.3 1.0
CB F:CYS39 3.3 6.2 1.0
N F:CYS44 3.4 8.3 1.0
N F:CYS39 3.5 8.0 1.0
CB F:CYS44 3.5 5.6 1.0
O F:HOH303 3.7 8.9 1.0
N F:GLY45 3.7 8.0 1.0
CA F:CYS39 3.8 8.3 1.0
CA F:CYS44 3.9 9.3 1.0
O F:CYS39 4.0 10.5 1.0
N F:GLY38 4.0 5.8 1.0
N F:ASN43 4.1 10.1 1.0
C F:CYS39 4.2 8.7 1.0
C F:GLY38 4.2 9.8 1.0
C F:CYS44 4.2 7.4 1.0
SG F:CYS59 4.3 6.2 1.0
OG1 F:THR46 4.5 9.3 1.0
C F:ASN43 4.5 9.0 1.0
CA F:SER42 4.5 9.7 1.0
N F:THR46 4.5 1.8 1.0
CA F:GLY38 4.6 5.8 1.0
C F:SER42 4.6 8.0 1.0
SG F:CYS47 4.6 9.2 1.0
N F:SER42 4.7 10.2 1.0
CA F:GLY45 4.7 7.0 1.0
CA F:ASN43 4.9 9.8 1.0

Iron binding site 7 out of 8 in 8uem

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Iron binding site 7 out of 8 in the The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe202

b:24.4
occ:1.00
 FE1 F:FES202 0.0 24.4 1.0
S1 F:FES202 2.2 0.0 1.0
S2 F:FES202 2.2 5.9 1.0
SG F:CYS133 2.3 7.5 1.0
SG F:CYS101 2.3 8.1 1.0
FE2 F:FES202 2.7 22.1 1.0
CB F:CYS133 3.2 2.5 1.0
CB F:CYS101 3.3 3.7 1.0
CA F:CYS133 3.5 6.2 1.0
N F:CYS101 4.0 7.1 1.0
N F:ARG134 4.1 6.7 1.0
O F:HOH321 4.2 10.6 1.0
C F:CYS133 4.2 3.9 1.0
CA F:CYS101 4.2 7.9 1.0
N F:CYS135 4.3 7.8 1.0
CB F:CYS135 4.4 6.6 1.0
SG F:CYS135 4.5 8.0 1.0
SG F:CYS98 4.6 4.8 1.0
CG2 F:THR136 4.6 5.7 1.0
O F:ILE132 4.7 10.0 1.0
N F:CYS133 4.8 6.0 1.0
C F:CYS101 4.9 2.3 1.0
N F:THR102 4.9 6.2 1.0
CA F:CYS135 4.9 6.1 1.0
N F:THR136 5.0 3.5 1.0
N F:PHE100 5.0 5.6 1.0
OG1 F:THR136 5.0 5.5 1.0

Iron binding site 8 out of 8 in 8uem

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Iron binding site 8 out of 8 in the The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of The Cryoem Structure of the High Affinity Carbon Monoxide Dehydrogenase From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe202

b:22.1
occ:1.00
 FE2 F:FES202 0.0 22.1 1.0
S2 F:FES202 2.2 5.9 1.0
S1 F:FES202 2.2 0.0 1.0
SG F:CYS98 2.2 4.8 1.0
SG F:CYS135 2.3 8.0 1.0
FE1 F:FES202 2.7 24.4 1.0
CB F:CYS135 3.2 6.6 1.0
CB F:CYS98 3.4 6.2 1.0
O D:HOH1095 3.6 6.1 1.0
N F:CYS98 3.6 3.6 1.0
CA F:CYS98 4.0 4.8 1.0
N F:GLY99 4.0 4.1 1.0
N F:CYS135 4.0 7.8 1.0
CA F:CYS135 4.2 6.1 1.0
SG F:CYS133 4.3 7.5 1.0
N F:PHE100 4.3 5.6 1.0
C F:CYS98 4.3 3.3 1.0
SG F:CYS101 4.7 8.1 1.0
N F:ARG134 4.7 6.7 1.0
N F:CYS101 4.8 7.1 1.0
N F:GLN97 4.8 2.3 1.0
C F:GLN97 4.8 3.8 1.0
CB F:PHE100 4.9 5.4 1.0
CA F:GLY99 5.0 5.3 1.0

Reference:

D.Gillett, A.Kropp, H.Venugopal, C.Barlow, C.Greening, R.Grinter. Structural Basis For Bacterial Energy Extraction From Atmospheric Hydrogen To Be Published.
Page generated: Thu Oct 31 20:46:03 2024

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