Iron in PDB 8uf3: Structure of Cytochrome C4 From Neisseria Gonorrhoeae

The structure of Structure of Cytochrome C4 From Neisseria Gonorrhoeae, PDB code: 8uf3 was solved by F.Zhong, M.J.Ragusa, E.V.Pletneva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.61 / 2.45
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	168.047, 168.047, 168.047, 90, 90, 90
R / Rfree (%)	20.4 / 24.3

The binding sites of Iron atom in the Structure of Cytochrome C4 From Neisseria Gonorrhoeae (pdb code 8uf3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of Cytochrome C4 From Neisseria Gonorrhoeae, PDB code: 8uf3:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Structure of Cytochrome C4 From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Cytochrome C4 From Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:42.3 occ:1.00 FE A:HEC201 0.0 42.3 1.0 ND A:HEC201 2.0 42.1 1.0 NB A:HEC201 2.0 39.2 1.0 NC A:HEC201 2.0 46.5 1.0 NE2 A:HIS21 2.1 43.8 1.0 NA A:HEC201 2.1 41.8 1.0 SD A:MET63 2.4 48.5 1.0 C1D A:HEC201 3.0 45.8 1.0 C4D A:HEC201 3.0 41.3 1.0 CE1 A:HIS21 3.0 45.2 1.0 C4C A:HEC201 3.0 42.4 1.0 C1B A:HEC201 3.1 43.1 1.0 C4B A:HEC201 3.1 45.4 1.0 C1C A:HEC201 3.1 43.6 1.0 CD2 A:HIS21 3.1 41.2 1.0 C1A A:HEC201 3.1 38.6 1.0 C4A A:HEC201 3.1 41.1 1.0 CG A:MET63 3.4 47.8 1.0 CHD A:HEC201 3.4 43.8 1.0 CHA A:HEC201 3.4 37.1 1.0 CHC A:HEC201 3.4 46.7 1.0 CHB A:HEC201 3.5 40.6 1.0 CE A:MET63 3.5 41.5 1.0 CB A:MET63 4.1 44.9 1.0 ND1 A:HIS21 4.2 45.1 1.0 C2D A:HEC201 4.2 44.5 1.0 CG A:HIS21 4.2 43.6 1.0 C3D A:HEC201 4.2 43.4 1.0 C2B A:HEC201 4.3 42.3 1.0 C3C A:HEC201 4.3 43.9 1.0 C2C A:HEC201 4.3 45.4 1.0 C3B A:HEC201 4.3 45.7 1.0 C2A A:HEC201 4.4 42.2 1.0 C3A A:HEC201 4.4 43.2 1.0

Iron binding site 2 out of 4 in the Structure of Cytochrome C4 From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Cytochrome C4 From Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:38.2 occ:1.00 FE A:HEC202 0.0 38.2 1.0 NA A:HEC202 2.0 42.4 1.0 NC A:HEC202 2.0 39.0 1.0 NB A:HEC202 2.0 40.2 1.0 NE2 A:HIS121 2.1 43.3 1.0 ND A:HEC202 2.1 39.8 1.0 SD A:MET166 2.4 44.1 1.0 CE1 A:HIS121 3.0 38.9 1.0 C4A A:HEC202 3.1 43.8 1.0 C1C A:HEC202 3.1 41.9 1.0 C1B A:HEC202 3.1 42.7 1.0 C4B A:HEC202 3.1 41.2 1.0 C4D A:HEC202 3.1 43.2 1.0 C1A A:HEC202 3.1 41.3 1.0 C1D A:HEC202 3.1 42.3 1.0 CD2 A:HIS121 3.1 38.3 1.0 C4C A:HEC202 3.1 42.2 1.0 CE A:MET166 3.3 40.9 1.0 CHC A:HEC202 3.4 43.8 1.0 CHB A:HEC202 3.4 43.1 1.0 CHA A:HEC202 3.5 40.1 1.0 CHD A:HEC202 3.5 44.2 1.0 CG A:MET166 3.5 41.4 1.0 ND1 A:HIS121 4.1 41.1 1.0 CG A:HIS121 4.2 43.7 1.0 C3A A:HEC202 4.3 38.6 1.0 C2C A:HEC202 4.3 42.2 1.0 C3B A:HEC202 4.3 42.4 1.0 C2B A:HEC202 4.3 42.6 1.0 C2A A:HEC202 4.3 38.9 1.0 C3C A:HEC202 4.3 41.0 1.0 C3D A:HEC202 4.3 42.6 1.0 C2D A:HEC202 4.3 41.2 1.0 CD1 A:LEU141 4.9 40.5 1.0 CB A:MET166 4.9 43.3 1.0

Iron binding site 3 out of 4 in the Structure of Cytochrome C4 From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Cytochrome C4 From Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:42.7 occ:1.00 FE B:HEC201 0.0 42.7 1.0 NB B:HEC201 2.0 39.8 1.0 NA B:HEC201 2.0 41.5 1.0 NE2 B:HIS21 2.0 41.3 1.0 ND B:HEC201 2.0 39.0 1.0 NC B:HEC201 2.1 40.2 1.0 SD B:MET63 2.4 43.4 1.0 CD2 B:HIS21 3.0 43.5 1.0 CE1 B:HIS21 3.0 42.6 1.0 C1B B:HEC201 3.0 42.4 1.0 C4D B:HEC201 3.0 43.2 1.0 C1A B:HEC201 3.0 39.7 1.0 C4B B:HEC201 3.1 44.2 1.0 C4A B:HEC201 3.1 40.0 1.0 C1D B:HEC201 3.1 42.3 1.0 C4C B:HEC201 3.1 40.6 1.0 C1C B:HEC201 3.1 43.1 1.0 CG B:MET63 3.3 40.4 1.0 CHA B:HEC201 3.4 41.8 1.0 CE B:MET63 3.4 37.2 1.0 CHB B:HEC201 3.4 37.5 1.0 CHD B:HEC201 3.4 43.2 1.0 CHC B:HEC201 3.5 43.1 1.0 CB B:MET63 4.0 41.1 1.0 ND1 B:HIS21 4.1 42.6 1.0 CG B:HIS21 4.1 46.3 1.0 C2B B:HEC201 4.2 41.1 1.0 C3B B:HEC201 4.3 42.0 1.0 C3D B:HEC201 4.3 38.8 1.0 C2A B:HEC201 4.3 40.4 1.0 C3A B:HEC201 4.3 41.6 1.0 C2D B:HEC201 4.3 43.0 1.0 C2C B:HEC201 4.4 43.4 1.0 C3C B:HEC201 4.4 44.9 1.0

Iron binding site 4 out of 4 in the Structure of Cytochrome C4 From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Cytochrome C4 From Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe202 b:39.2 occ:1.00 FE B:HEC202 0.0 39.2 1.0 NB B:HEC202 2.0 43.9 1.0 NA B:HEC202 2.0 41.9 1.0 NE2 B:HIS121 2.0 43.1 1.0 NC B:HEC202 2.0 43.6 1.0 ND B:HEC202 2.1 41.0 1.0 SD B:MET166 2.3 46.6 1.0 CE1 B:HIS121 3.0 45.8 1.0 C4B B:HEC202 3.0 45.8 1.0 C1C B:HEC202 3.0 43.6 1.0 C1B B:HEC202 3.0 47.0 1.0 C1A B:HEC202 3.0 42.7 1.0 C4A B:HEC202 3.1 41.8 1.0 CD2 B:HIS121 3.1 43.0 1.0 C4D B:HEC202 3.1 41.6 1.0 C1D B:HEC202 3.1 43.7 1.0 C4C B:HEC202 3.1 42.3 1.0 CHC B:HEC202 3.4 45.2 1.0 CHA B:HEC202 3.4 41.0 1.0 CE B:MET166 3.4 40.3 1.0 CHB B:HEC202 3.4 42.2 1.0 CG B:MET166 3.4 45.5 1.0 CHD B:HEC202 3.5 43.0 1.0 ND1 B:HIS121 4.1 44.4 1.0 CG B:HIS121 4.2 44.7 1.0 C3B B:HEC202 4.2 43.4 1.0 C2B B:HEC202 4.2 46.1 1.0 C2A B:HEC202 4.3 43.2 1.0 C2C B:HEC202 4.3 43.2 1.0 C3A B:HEC202 4.3 43.7 1.0 C3D B:HEC202 4.3 42.7 1.0 C3C B:HEC202 4.3 42.9 1.0 C2D B:HEC202 4.3 44.1 1.0 CB B:MET166 4.8 48.0 1.0

F.Zhong, M.E.Reik, M.J.Ragusa, E.V.Pletneva. The Structure of the Diheme Cytochrome C 4 From Neisseria Gonorrhoeae Reveals Multiple Contributors to Tuning Reduction Potentials. J.Inorg.Biochem. V. 253 12496 2024.
ISSN: ISSN 0162-0134
PubMed: 38330683
DOI: 10.1016/J.JINORGBIO.2024.112496