Iron in PDB 8vij: Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin Y34F C51S C71S Variant (Cyanomet)

The structure of Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin Y34F C51S C71S Variant (Cyanomet), PDB code: 8vij was solved by J.T.J.Lecomte, J.L.Schlessman, J.E.Martinez, T.D.Schultz, M.A.Siegler, M.Delcampo, P.Le Magueres, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	16.97 / 1.35
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	27.464, 105.154, 151.319, 90, 90, 90
R / Rfree (%)	16.3 / 20.1

The binding sites of Iron atom in the Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin Y34F C51S C71S Variant (Cyanomet) (pdb code 8vij). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin Y34F C51S C71S Variant (Cyanomet), PDB code: 8vij:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin Y34F C51S C71S Variant (Cyanomet)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin Y34F C51S C71S Variant (Cyanomet) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:5.5 occ:1.00 FE A:HEM201 0.0 5.5 1.0 ND A:HEM201 2.0 6.6 1.0 C A:CYN202 2.0 6.1 1.0 NA A:HEM201 2.0 6.0 1.0 NC A:HEM201 2.0 4.4 1.0 NB A:HEM201 2.1 5.2 1.0 NE2 A:HIS69 2.1 4.1 1.0 C4D A:HEM201 3.0 6.0 1.0 C1D A:HEM201 3.0 6.3 1.0 C4C A:HEM201 3.0 4.6 1.0 C1A A:HEM201 3.0 5.7 1.0 C4B A:HEM201 3.0 3.8 1.0 C1C A:HEM201 3.0 4.2 1.0 CE1 A:HIS69 3.0 3.6 1.0 C4A A:HEM201 3.1 5.3 1.0 C1B A:HEM201 3.1 3.6 1.0 CD2 A:HIS69 3.1 3.5 1.0 N A:CYN202 3.2 14.2 1.0 CHD A:HEM201 3.4 4.3 1.0 CHA A:HEM201 3.4 7.0 1.0 CHC A:HEM201 3.4 4.7 1.0 CHB A:HEM201 3.4 5.3 1.0 ND1 A:HIS69 4.2 4.0 1.0 CG A:HIS69 4.2 3.4 1.0 C2D A:HEM201 4.2 7.4 1.0 C3D A:HEM201 4.2 8.4 1.0 C3B A:HEM201 4.3 5.5 1.0 C3C A:HEM201 4.3 4.8 1.0 C2C A:HEM201 4.3 4.6 1.0 C2A A:HEM201 4.3 5.2 1.0 C2B A:HEM201 4.3 5.0 1.0 C3A A:HEM201 4.3 4.7 1.0 O A:HOH364 4.7 17.7 1.0

Iron binding site 2 out of 4 in the Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin Y34F C51S C71S Variant (Cyanomet)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin Y34F C51S C71S Variant (Cyanomet) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:5.9 occ:1.00 FE B:HEM201 0.0 5.9 1.0 ND B:HEM201 2.0 6.5 1.0 C B:CYN202 2.0 5.6 1.0 NA B:HEM201 2.0 6.3 1.0 NC B:HEM201 2.0 4.5 1.0 NB B:HEM201 2.1 5.3 1.0 NE2 B:HIS69 2.1 3.8 1.0 C4C B:HEM201 3.0 4.3 1.0 C4D B:HEM201 3.0 4.9 1.0 C1D B:HEM201 3.0 6.2 1.0 C1C B:HEM201 3.0 4.3 1.0 C1A B:HEM201 3.0 4.9 1.0 C4B B:HEM201 3.0 3.6 1.0 C4A B:HEM201 3.1 4.9 1.0 CE1 B:HIS69 3.1 4.0 1.0 C1B B:HEM201 3.1 6.0 1.0 CD2 B:HIS69 3.1 3.3 1.0 N B:CYN202 3.2 15.1 1.0 CHC B:HEM201 3.4 4.8 1.0 CHA B:HEM201 3.4 4.9 1.0 CHD B:HEM201 3.4 4.4 1.0 CHB B:HEM201 3.4 5.5 1.0 ND1 B:HIS69 4.2 5.7 1.0 CG B:HIS69 4.2 3.8 1.0 C3C B:HEM201 4.3 5.7 1.0 C2D B:HEM201 4.3 6.9 1.0 C3D B:HEM201 4.3 6.5 1.0 C2C B:HEM201 4.3 4.7 1.0 C3B B:HEM201 4.3 6.5 1.0 C2A B:HEM201 4.3 6.0 1.0 C2B B:HEM201 4.3 6.2 1.0 C3A B:HEM201 4.3 5.3 1.0 O B:HOH371 4.7 17.4 1.0

Iron binding site 3 out of 4 in the Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin Y34F C51S C71S Variant (Cyanomet)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin Y34F C51S C71S Variant (Cyanomet) within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe201 b:6.5 occ:1.00 FE C:HEM201 0.0 6.5 1.0 ND C:HEM201 2.0 6.4 1.0 NA C:HEM201 2.0 5.8 1.0 NC C:HEM201 2.0 6.0 1.0 NB C:HEM201 2.0 5.2 1.0 NE2 C:HIS69 2.1 3.8 1.0 C C:CYN202 2.1 6.8 1.0 C4D C:HEM201 3.0 5.7 1.0 C4C C:HEM201 3.0 4.5 1.0 C1D C:HEM201 3.0 7.7 1.0 CE1 C:HIS69 3.0 4.5 1.0 C4B C:HEM201 3.0 5.6 1.0 C1C C:HEM201 3.0 4.8 1.0 C1A C:HEM201 3.0 5.7 1.0 CD2 C:HIS69 3.1 4.0 1.0 C4A C:HEM201 3.1 4.5 1.0 C1B C:HEM201 3.1 5.4 1.0 N C:CYN202 3.2 18.4 1.0 CHA C:HEM201 3.4 6.4 1.0 CHC C:HEM201 3.4 4.9 1.0 CHD C:HEM201 3.4 6.7 1.0 CHB C:HEM201 3.4 6.7 1.0 ND1 C:HIS69 4.2 4.9 1.0 CG C:HIS69 4.2 4.2 1.0 C3D C:HEM201 4.3 6.6 1.0 C2D C:HEM201 4.3 6.6 1.0 C3B C:HEM201 4.3 6.3 1.0 C3C C:HEM201 4.3 5.5 1.0 C2C C:HEM201 4.3 5.2 1.0 C2B C:HEM201 4.3 5.0 1.0 C2A C:HEM201 4.3 6.8 1.0 C3A C:HEM201 4.3 7.2 1.0 O C:HOH355 4.8 17.2 1.0

Iron binding site 4 out of 4 in the Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin Y34F C51S C71S Variant (Cyanomet)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Shewanella Benthica Group 1 Truncated Hemoglobin Y34F C51S C71S Variant (Cyanomet) within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe201 b:5.1 occ:1.00 FE D:HEM201 0.0 5.1 1.0 ND D:HEM201 2.0 5.6 1.0 C D:CYN202 2.0 4.8 1.0 NA D:HEM201 2.0 3.9 1.0 NC D:HEM201 2.0 4.7 1.0 NB D:HEM201 2.0 4.3 1.0 NE2 D:HIS69 2.1 3.9 1.0 C4D D:HEM201 3.0 6.0 1.0 C1D D:HEM201 3.0 7.0 1.0 CE1 D:HIS69 3.0 3.5 1.0 C4C D:HEM201 3.0 3.7 1.0 C4B D:HEM201 3.0 3.5 1.0 C1C D:HEM201 3.0 3.4 1.0 C1A D:HEM201 3.0 4.9 1.0 C1B D:HEM201 3.1 4.0 1.0 C4A D:HEM201 3.1 4.2 1.0 CD2 D:HIS69 3.1 3.6 1.0 N D:CYN202 3.2 13.6 1.0 CHA D:HEM201 3.4 7.7 1.0 CHC D:HEM201 3.4 4.4 1.0 CHD D:HEM201 3.4 5.3 1.0 CHB D:HEM201 3.4 4.0 1.0 ND1 D:HIS69 4.1 3.5 1.0 CG D:HIS69 4.2 3.7 1.0 C3D D:HEM201 4.3 8.9 1.0 C2D D:HEM201 4.3 8.7 1.0 C3B D:HEM201 4.3 5.7 1.0 C2C D:HEM201 4.3 3.8 1.0 C3C D:HEM201 4.3 4.9 1.0 C2B D:HEM201 4.3 5.8 1.0 C2A D:HEM201 4.3 4.5 1.0 C3A D:HEM201 4.3 4.5 1.0 O D:HOH360 4.7 16.2 1.0

J.T.J.Lecomte, J.T.J.Lecomte, J.L.Schlessman, J.E.Martinez, T.D.Schultz, M.A.Siegler, M.Delcampo, P.Le Magueres. N/A N/A.