Iron in PDB 8vtj: Crystal Structure of R. Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Cyanophenylalanine

Protein crystallography data

The structure of Crystal Structure of R. Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Cyanophenylalanine, PDB code: 8vtj was solved by I.Mathews, K.Tran, S.G.Boxer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.85 / 2.81
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 141.29, 141.29, 187.18, 90, 90, 120
R / Rfree (%) 17.1 / 19.7

Other elements in 8vtj:

The structure of Crystal Structure of R. Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Cyanophenylalanine also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Magnesium (Mg) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of R. Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Cyanophenylalanine (pdb code 8vtj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of R. Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Cyanophenylalanine, PDB code: 8vtj:

Iron binding site 1 out of 1 in 8vtj

Go back to Iron Binding Sites List in 8vtj
Iron binding site 1 out of 1 in the Crystal Structure of R. Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Cyanophenylalanine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of R. Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Cyanophenylalanine within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Fe405

b:32.6
occ:1.00
OE2 M:GLU234 2.2 41.8 1.0
NE2 M:HIS219 2.2 40.2 1.0
NE2 L:HIS190 2.2 41.3 1.0
NE2 M:HIS266 2.3 38.3 1.0
NE2 L:HIS230 2.3 39.9 1.0
OE1 M:GLU234 2.4 44.5 1.0
CD M:GLU234 2.6 41.3 1.0
CE1 L:HIS190 2.9 37.5 1.0
CE1 M:HIS219 3.0 37.5 1.0
CE1 M:HIS266 3.1 38.4 1.0
CE1 L:HIS230 3.2 37.0 1.0
CD2 M:HIS219 3.3 39.0 1.0
CD2 L:HIS230 3.3 39.7 1.0
CD2 L:HIS190 3.4 41.7 1.0
CD2 M:HIS266 3.4 37.6 1.0
CG M:GLU234 4.1 35.6 1.0
ND1 L:HIS190 4.1 35.8 1.0
ND1 M:HIS219 4.2 36.1 1.0
ND1 M:HIS266 4.3 39.0 1.0
CG M:HIS219 4.3 38.1 1.0
ND1 L:HIS230 4.4 37.4 1.0
CG L:HIS190 4.4 39.0 1.0
CG1 M:ILE223 4.4 36.4 1.0
CG L:HIS230 4.4 36.8 1.0
CG M:HIS266 4.5 39.9 1.0
CG2 L:VAL194 4.6 36.7 1.0
O M:HOH511 4.8 39.3 1.0
CB M:GLU234 4.9 35.1 1.0

Reference:

I.Mathews, K.Tran, S.G.Boxer. Crystal Structure of R. Sphaeroides Photosynthetic Reaction Center Variant Y(M210)2-Cyanophenylalanine To Be Published.
Page generated: Sat Aug 10 18:45:44 2024

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