Iron in PDB 8vu3: Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles

All present enzymatic activity of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles:
1.97.1.12;

The structure of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles also contains other interesting chemical elements:

Magnesium	(Mg)	288 atoms
Calcium	(Ca)	3 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles (pdb code 8vu3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 36 binding sites of Iron where determined in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles, PDB code: 8vu3:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 36 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe847 b:31.1 occ:1.00 FE1 A:SF4847 0.0 31.1 1.0 SG B:CYS575 2.2 15.9 1.0 S3 A:SF4847 2.3 8.8 1.0 S2 A:SF4847 2.3 17.5 1.0 S4 A:SF4847 2.3 11.3 1.0 FE2 A:SF4847 2.7 27.0 1.0 FE4 A:SF4847 2.7 29.4 1.0 FE3 A:SF4847 2.7 29.4 1.0 CB B:CYS575 3.4 14.9 1.0 CA B:CYS575 3.8 11.9 1.0 CZ3 B:TRP674 3.9 1.1 1.0 S1 A:SF4847 3.9 23.6 1.0 N B:CYS575 4.1 21.7 1.0 CD1 A:ILE724 4.3 17.8 1.0 SG B:CYS566 4.6 13.5 1.0 CE3 B:TRP674 4.6 11.2 1.0 CB B:CYS566 4.6 20.4 1.0 CG2 A:ILE724 4.7 29.8 1.0 SG A:CYS578 4.7 19.2 1.0 CH2 B:TRP674 4.8 9.7 1.0 SG A:CYS587 4.9 19.5 1.0 CG1 A:ILE724 4.9 15.2 1.0 C B:THR574 4.9 16.8 1.0 NH2 A:ARG728 5.0 21.3 1.0

Iron binding site 2 out of 36 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe847 b:27.0 occ:1.00 FE2 A:SF4847 0.0 27.0 1.0 SG A:CYS587 2.2 19.5 1.0 S4 A:SF4847 2.3 11.3 1.0 S1 A:SF4847 2.3 23.6 1.0 S3 A:SF4847 2.3 8.8 1.0 FE1 A:SF4847 2.7 31.1 1.0 FE4 A:SF4847 2.7 29.4 1.0 FE3 A:SF4847 2.7 29.4 1.0 CB A:CYS587 3.1 6.7 1.0 CA A:CYS587 3.8 10.9 1.0 S2 A:SF4847 3.9 17.5 1.0 CE3 B:TRP674 4.0 11.2 1.0 CZ3 B:TRP674 4.1 1.1 1.0 N A:CYS587 4.2 16.9 1.0 CD1 B:ILE709 4.3 16.1 1.0 CB A:CYS578 4.5 13.2 1.0 SG A:CYS578 4.6 19.2 1.0 SG B:CYS575 4.7 15.9 1.0 CG1 B:ILE709 4.8 9.7 1.0 NH2 A:ARG728 4.9 21.3 1.0 SG B:CYS566 4.9 13.5 1.0

Iron binding site 3 out of 36 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe847 b:29.4 occ:1.00 FE3 A:SF4847 0.0 29.4 1.0 SG A:CYS578 2.2 19.2 1.0 S2 A:SF4847 2.3 17.5 1.0 S1 A:SF4847 2.3 23.6 1.0 S4 A:SF4847 2.3 11.3 1.0 FE4 A:SF4847 2.7 29.4 1.0 FE1 A:SF4847 2.7 31.1 1.0 FE2 A:SF4847 2.7 27.0 1.0 CB A:CYS578 3.1 13.2 1.0 S3 A:SF4847 3.9 8.8 1.0 CD B:PRO569 4.4 14.2 1.0 CA A:CYS578 4.5 11.1 1.0 N B:PRO569 4.5 11.1 1.0 N A:GLY580 4.5 13.1 1.0 CA A:GLY580 4.6 0.1 1.0 SG A:CYS587 4.6 19.5 1.0 SG B:CYS566 4.6 13.5 1.0 C A:GLY580 4.6 5.6 1.0 SG B:CYS575 4.6 15.9 1.0 CB B:PRO569 4.7 12.8 1.0 O A:GLY580 4.8 8.8 1.0 C B:GLY568 4.8 13.7 1.0 CD1 A:ILE724 4.8 17.8 1.0 N A:CYS578 4.9 23.0 1.0 CA A:CYS587 4.9 10.9 1.0 CG B:PRO569 4.9 15.8 1.0 CB A:CYS587 4.9 6.7 1.0 CA B:GLY568 4.9 11.7 1.0 CA B:PRO569 4.9 8.1 1.0

Iron binding site 4 out of 36 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe847 b:29.4 occ:1.00 FE4 A:SF4847 0.0 29.4 1.0 SG B:CYS566 2.2 13.5 1.0 S1 A:SF4847 2.3 23.6 1.0 S2 A:SF4847 2.3 17.5 1.0 S3 A:SF4847 2.3 8.8 1.0 FE1 A:SF4847 2.7 31.1 1.0 FE3 A:SF4847 2.7 29.4 1.0 FE2 A:SF4847 2.7 27.0 1.0 CB B:CYS566 3.2 20.4 1.0 S4 A:SF4847 3.9 11.3 1.0 CB A:PRO581 4.5 8.1 1.0 CA B:GLY568 4.5 11.7 1.0 CA B:CYS566 4.5 12.8 1.0 N A:PRO581 4.5 8.5 1.0 CD1 B:ILE709 4.6 16.1 1.0 N B:GLY568 4.6 12.2 1.0 SG A:CYS587 4.6 19.5 1.0 CA A:PRO581 4.6 6.3 1.0 N B:CYS566 4.8 21.3 1.0 CD A:PRO581 4.8 11.2 1.0 SG B:CYS575 4.8 15.9 1.0 SG A:CYS578 4.8 19.2 1.0 C A:GLY580 4.8 5.6 1.0 C B:GLY568 4.9 13.7 1.0 C B:PRO565 5.0 15.5 1.0

Iron binding site 5 out of 36 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:27.0 occ:1.00 FE1 C:SF4101 0.0 27.0 1.0 SG C:CYS51 2.3 23.9 1.0 S4 C:SF4101 2.3 12.6 1.0 S2 C:SF4101 2.3 17.4 1.0 S3 C:SF4101 2.3 23.1 1.0 FE3 C:SF4101 2.7 27.4 1.0 FE2 C:SF4101 2.7 32.8 1.0 FE4 C:SF4101 2.7 32.9 1.0 N C:CYS51 3.4 12.9 1.0 N C:LYS52 3.6 13.2 1.0 CB C:CYS51 3.7 17.1 1.0 S1 C:SF4101 3.9 12.8 1.0 CA C:CYS51 3.9 6.7 1.0 CD C:PRO22 4.0 13.4 1.0 C C:CYS51 4.2 17.1 1.0 N C:GLY50 4.2 15.3 1.0 N C:ARG53 4.2 12.6 1.0 C C:GLY50 4.3 21.0 1.0 CG2 C:VAL49 4.3 7.8 1.0 CA C:LYS52 4.5 10.4 1.0 CA C:GLY50 4.5 2.4 1.0 CG C:PRO22 4.5 18.4 1.0 SG C:CYS48 4.7 23.2 1.0 SG C:CYS54 4.7 25.9 1.0 SG C:CYS21 4.7 25.9 1.0 C C:LYS52 4.9 9.8 1.0 CB C:ARG53 4.9 19.9 1.0 N C:VAL49 5.0 24.0 1.0

Iron binding site 6 out of 36 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:32.8 occ:1.00 FE2 C:SF4101 0.0 32.8 1.0 SG C:CYS21 2.3 25.9 1.0 S1 C:SF4101 2.3 12.8 1.0 S3 C:SF4101 2.3 23.1 1.0 S4 C:SF4101 2.3 12.6 1.0 FE3 C:SF4101 2.7 27.4 1.0 FE4 C:SF4101 2.7 32.9 1.0 FE1 C:SF4101 2.7 27.0 1.0 CB C:CYS21 3.4 20.0 1.0 CA C:CYS21 3.8 8.5 1.0 S2 C:SF4101 3.9 17.4 1.0 CD C:PRO22 4.0 13.4 1.0 OG1 C:THR23 4.0 37.8 1.0 CG2 C:VAL25 4.1 22.8 1.0 CB C:VAL25 4.1 24.2 1.0 CD1 C:LEU26 4.5 16.5 1.0 N C:PRO22 4.5 24.2 1.0 C C:CYS21 4.6 21.2 1.0 SG C:CYS51 4.6 23.9 1.0 SG C:CYS54 4.7 25.9 1.0 SG C:CYS48 4.8 23.2 1.0 CG C:LEU26 4.8 20.2 1.0 CG C:PRO22 5.0 18.4 1.0 N C:THR23 5.0 19.3 1.0 N C:VAL25 5.0 22.9 1.0 CG1 C:VAL25 5.0 23.8 1.0

Iron binding site 7 out of 36 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:27.4 occ:1.00 FE3 C:SF4101 0.0 27.4 1.0 SG C:CYS54 2.3 25.9 1.0 S4 C:SF4101 2.3 12.6 1.0 S2 C:SF4101 2.3 17.4 1.0 S1 C:SF4101 2.3 12.8 1.0 FE2 C:SF4101 2.7 32.8 1.0 FE1 C:SF4101 2.7 27.0 1.0 FE4 C:SF4101 2.7 32.9 1.0 CB C:CYS54 3.5 21.0 1.0 S3 C:SF4101 3.9 23.1 1.0 N C:CYS54 4.0 15.0 1.0 CG2 C:VAL67 4.1 25.5 1.0 CA C:CYS54 4.4 15.7 1.0 N C:LYS52 4.4 13.2 1.0 CA C:LYS52 4.4 10.4 1.0 N C:ARG53 4.5 12.6 1.0 CD1 C:LEU26 4.5 16.5 1.0 SG C:CYS51 4.7 23.9 1.0 SG C:CYS21 4.8 25.9 1.0 SG C:CYS48 4.8 23.2 1.0 C C:LYS52 4.8 9.8 1.0

Iron binding site 8 out of 36 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:32.9 occ:1.00 FE4 C:SF4101 0.0 32.9 1.0 SG C:CYS48 2.3 23.2 1.0 S3 C:SF4101 2.3 23.1 1.0 S2 C:SF4101 2.3 17.4 1.0 S1 C:SF4101 2.3 12.8 1.0 FE2 C:SF4101 2.7 32.8 1.0 FE3 C:SF4101 2.7 27.4 1.0 FE1 C:SF4101 2.7 27.0 1.0 CB C:CYS48 3.5 19.9 1.0 CA C:CYS48 3.9 19.8 1.0 S4 C:SF4101 3.9 12.6 1.0 N C:GLY50 3.9 15.3 1.0 N C:VAL49 4.2 24.0 1.0 CG2 C:VAL5 4.2 23.5 1.0 CA C:GLY50 4.4 2.4 1.0 CG2 C:VAL25 4.4 22.8 1.0 C C:CYS48 4.4 27.4 1.0 CG1 C:VAL67 4.7 19.6 1.0 N C:CYS51 4.7 12.9 1.0 CB C:VAL25 4.8 24.2 1.0 SG C:CYS21 4.8 25.9 1.0 SG C:CYS54 4.9 25.9 1.0 CG1 C:VAL25 4.9 23.8 1.0 OG1 C:THR23 4.9 37.8 1.0 SG C:CYS51 4.9 23.9 1.0 C C:GLY50 5.0 21.0 1.0

Iron binding site 9 out of 36 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:49.3 occ:1.00 FE1 C:SF4102 0.0 49.3 1.0 SG C:CYS58 2.3 30.1 1.0 S3 C:SF4102 2.3 30.5 1.0 S2 C:SF4102 2.3 27.3 1.0 S4 C:SF4102 2.3 32.9 1.0 FE4 C:SF4102 2.7 47.3 1.0 FE2 C:SF4102 2.7 48.0 1.0 FE3 C:SF4102 2.7 41.0 1.0 CB C:CYS58 3.4 22.4 1.0 CA C:CYS58 3.8 22.5 1.0 S1 C:SF4102 3.9 31.8 1.0 CD C:PRO59 4.0 25.6 1.0 CB C:SER64 4.1 23.2 1.0 CG2 C:ILE65 4.3 24.7 1.0 OG C:SER64 4.4 26.1 1.0 SG C:CYS14 4.6 46.6 1.0 N C:ILE65 4.6 24.4 1.0 N C:PRO59 4.7 34.0 1.0 C C:CYS58 4.7 23.6 1.0 CB C:CYS17 4.8 23.1 1.0 SG C:CYS17 4.8 34.8 1.0 CB C:ILE65 4.8 19.1 1.0 N C:SER64 4.8 25.4 1.0 OG1 C:THR60 4.9 41.8 1.0 CA C:SER64 4.9 19.2 1.0 CG2 C:THR60 4.9 30.6 1.0 SG C:CYS11 4.9 40.3 1.0 N C:CYS58 4.9 15.1 1.0

Iron binding site 10 out of 36 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:48.0 occ:1.00 FE2 C:SF4102 0.0 48.0 1.0 SG C:CYS17 2.3 34.8 1.0 S4 C:SF4102 2.3 32.9 1.0 S1 C:SF4102 2.3 31.8 1.0 S3 C:SF4102 2.3 30.5 1.0 FE4 C:SF4102 2.7 47.3 1.0 FE3 C:SF4102 2.7 41.0 1.0 FE1 C:SF4102 2.7 49.3 1.0 CB C:CYS17 3.0 23.1 1.0 N C:CYS17 3.8 24.4 1.0 S2 C:SF4102 3.9 27.3 1.0 CB C:ALA40 3.9 28.6 1.0 CA C:CYS17 4.0 20.1 1.0 SG C:CYS11 4.6 40.3 1.0 N C:GLN16 4.7 34.0 1.0 SG C:CYS14 4.8 46.6 1.0 SG C:CYS58 4.8 30.1 1.0 CG2 C:ILE65 4.9 24.7 1.0 N C:THR15 4.9 30.4 1.0 C C:GLN16 4.9 27.3 1.0 N C:VAL18 4.9 23.3 1.0 C C:CYS17 5.0 21.8 1.0 CB C:ILE65 5.0 19.1 1.0

C.J.Gisriel, T.Malavath, G.W.Brudvig, L.M.Utschig. The Cryo-Em Structure of A Biohybrid Photosystem I Photocatalyst Reveals the Locations of Bound Platinum Nanoparticles To Be Published.