Iron in PDB 8w7v: Udif-E164A-E168A Soaking in FE2+ Solution For 50 Minutes

The structure of Udif-E164A-E168A Soaking in FE2+ Solution For 50 Minutes, PDB code: 8w7v was solved by W.M.Wang, H.F.Xi, W.J.Gong, D.Y.Ma, H.F.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.66 / 2.81
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	180.082, 180.082, 180.082, 90, 90, 90
R / Rfree (%)	20.1 / 26.2

The binding sites of Iron atom in the Udif-E164A-E168A Soaking in FE2+ Solution For 50 Minutes (pdb code 8w7v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Udif-E164A-E168A Soaking in FE2+ Solution For 50 Minutes, PDB code: 8w7v:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Udif-E164A-E168A Soaking in FE2+ Solution For 50 Minutes


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Udif-E164A-E168A Soaking in FE2+ Solution For 50 Minutes within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:43.2 occ:1.00 OD2 A:ASP138 1.8 47.0 1.0 NE2 A:HIS65 1.9 39.2 1.0 OD2 A:ASP60 1.9 53.5 1.0 OD2 A:ASP142 2.3 43.4 1.0 CE1 A:HIS65 2.7 38.8 1.0 CG A:ASP138 3.0 44.0 1.0 CG A:ASP60 3.1 46.4 1.0 CD2 A:HIS65 3.1 35.9 1.0 CG A:ASP142 3.3 37.7 1.0 OD1 A:ASP60 3.6 55.6 1.0 OD1 A:ASP138 3.7 58.6 1.0 OD1 A:ASP142 3.7 42.0 1.0 ND1 A:HIS65 3.9 39.3 1.0 CB A:ASP138 4.1 35.0 1.0 CG A:HIS65 4.1 35.9 1.0 CB A:ASP60 4.3 37.3 1.0 O A:HOH316 4.3 30.0 1.0 CH2 A:TRP134 4.3 37.4 1.0 CB A:ASP142 4.6 37.3 1.0 CD A:LYS61 4.7 37.8 1.0 CE A:LYS61 4.7 36.2 1.0 CZ3 A:TRP134 4.8 36.0 1.0 O A:ASP138 4.8 30.7 1.0 NZ A:LYS141 4.9 55.4 1.0

Iron binding site 2 out of 4 in the Udif-E164A-E168A Soaking in FE2+ Solution For 50 Minutes


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Udif-E164A-E168A Soaking in FE2+ Solution For 50 Minutes within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:77.9 occ:1.00 OD1 A:ASP124 3.6 39.6 1.0 OD2 A:ASP124 3.9 39.3 1.0 CG A:ASP124 4.2 40.0 1.0 O A:LEU121 4.3 35.6 1.0

Iron binding site 3 out of 4 in the Udif-E164A-E168A Soaking in FE2+ Solution For 50 Minutes


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Udif-E164A-E168A Soaking in FE2+ Solution For 50 Minutes within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe203 b:30.0 occ:1.00 OD1 A:ASP60 4.2 55.6 1.0 CG A:ASP60 4.4 46.4 1.0 NZ A:LYS141 4.6 55.4 1.0 OD2 A:ASP60 4.7 53.5 1.0 CB A:ASP60 4.9 37.3 1.0

Iron binding site 4 out of 4 in the Udif-E164A-E168A Soaking in FE2+ Solution For 50 Minutes


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Udif-E164A-E168A Soaking in FE2+ Solution For 50 Minutes within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe204 b:30.0 occ:1.00 OD2 A:ASP148 3.8 41.6 1.0 CG A:ASP148 4.6 41.9 1.0 OD1 A:ASP148 4.7 38.5 1.0

W.Wang, H.Xi, D.Fu, D.Ma, W.Gong, Y.Zhao, X.Li, L.Wu, Y.Guo, G.Zhao, H.Wang. Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized By Protein Nanocages. J.Am.Chem.Soc. V. 146 11657 2024.
ISSN: ESSN 1520-5126
PubMed: 38641862
DOI: 10.1021/JACS.3C13830