Iron in PDB 8wb4: Structure of Psii-Acpii Supercomplex From Cryptophyte Algae

All present enzymatic activity of Structure of Psii-Acpii Supercomplex From Cryptophyte Algae:
1.10.3.9;

The structure of Structure of Psii-Acpii Supercomplex From Cryptophyte Algae also contains other interesting chemical elements:

Manganese	(Mn)	8 atoms
Magnesium	(Mg)	220 atoms
Calcium	(Ca)	2 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Iron atom in the Structure of Psii-Acpii Supercomplex From Cryptophyte Algae (pdb code 8wb4). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Structure of Psii-Acpii Supercomplex From Cryptophyte Algae, PDB code: 8wb4:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in the Structure of Psii-Acpii Supercomplex From Cryptophyte Algae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Psii-Acpii Supercomplex From Cryptophyte Algae within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe408 b:96.6 occ:1.00 O3 A:BCT611 2.7 93.8 1.0 NE2 D:HIS267 2.8 54.9 1.0 O2 A:BCT611 2.8 93.3 1.0 NE2 A:HIS272 2.9 55.6 1.0 NE2 D:HIS213 2.9 51.6 1.0 C A:BCT611 3.0 95.9 1.0 CE1 D:HIS267 3.1 52.0 1.0 CE1 D:HIS213 3.2 54.2 1.0 OH D:TYR243 3.4 64.8 1.0 CE1 A:HIS272 3.5 57.8 1.0 CE1 A:HIS215 3.5 61.9 1.0 CD2 A:HIS272 4.0 58.5 1.0 CE1 D:TYR243 4.0 58.5 1.0 NE2 A:HIS215 4.0 69.1 1.0 CD2 D:HIS267 4.1 53.9 1.0 O1 A:BCT611 4.1 93.2 1.0 CZ D:TYR243 4.1 61.4 1.0 CD2 D:HIS213 4.2 50.2 1.0 CG2 D:VAL217 4.4 54.6 1.0 ND1 D:HIS267 4.4 53.0 1.0 ND1 D:HIS213 4.5 46.1 1.0 ND1 A:HIS215 4.7 63.5 1.0 ND1 A:HIS272 4.7 59.6 1.0 CD D:LYS263 4.8 60.0 1.0 CG D:HIS267 4.9 48.1 1.0 CG D:LYS263 4.9 56.8 1.0 OH A:TYR246 4.9 82.0 1.0 CG A:HIS272 4.9 54.5 1.0

Iron binding site 2 out of 6 in the Structure of Psii-Acpii Supercomplex From Cryptophyte Algae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Psii-Acpii Supercomplex From Cryptophyte Algae within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe101 b:100.8 occ:1.00 FE E:HEM101 0.0 100.8 1.0 NA E:HEM101 2.0 101.1 1.0 NC E:HEM101 2.0 101.2 1.0 NB E:HEM101 2.1 97.2 1.0 ND E:HEM101 2.1 100.1 1.0 NE2 F:HIS21 2.9 81.0 1.0 CE1 F:HIS21 3.0 84.2 1.0 NE2 E:HIS24 3.0 112.0 1.0 CE1 E:HIS24 3.0 112.2 1.0 C1D E:HEM101 3.0 98.5 1.0 C4D E:HEM101 3.1 97.3 1.0 C1C E:HEM101 3.1 100.3 1.0 C4B E:HEM101 3.1 96.7 1.0 C1A E:HEM101 3.1 98.9 1.0 C4A E:HEM101 3.1 100.8 1.0 C1B E:HEM101 3.1 99.5 1.0 C4C E:HEM101 3.1 100.0 1.0 CHC E:HEM101 3.4 97.5 1.0 CHD E:HEM101 3.4 98.8 1.0 CHA E:HEM101 3.4 96.0 1.0 CHB E:HEM101 3.4 101.1 1.0 ND1 E:HIS24 4.0 114.1 1.0 CD2 E:HIS24 4.0 113.2 1.0 CD2 F:HIS21 4.1 79.9 1.0 ND1 F:HIS21 4.2 85.7 1.0 C2D E:HEM101 4.2 98.2 1.0 C3D E:HEM101 4.2 99.2 1.0 C2C E:HEM101 4.3 100.9 1.0 C2A E:HEM101 4.3 99.7 1.0 C3B E:HEM101 4.3 98.0 1.0 C3A E:HEM101 4.3 98.3 1.0 C2B E:HEM101 4.3 99.1 1.0 C3C E:HEM101 4.3 99.5 1.0 CG E:HIS24 4.5 114.1 1.0 CG F:HIS21 4.7 81.8 1.0 NE1 F:TRP17 4.8 88.4 1.0

Iron binding site 3 out of 6 in the Structure of Psii-Acpii Supercomplex From Cryptophyte Algae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Psii-Acpii Supercomplex From Cryptophyte Algae within 5.0Å range: probe atom residue distance (Å) B Occ V:Fe201 b:48.2 occ:1.00 FE V:HEM201 0.0 48.2 1.0 NC V:HEM201 2.0 48.5 1.0 NA V:HEM201 2.1 49.8 1.0 ND V:HEM201 2.1 46.2 1.0 NB V:HEM201 2.1 48.2 1.0 NE2 V:HIS67 2.9 28.6 1.0 NE2 V:HIS118 2.9 41.1 1.0 C1B V:HEM201 3.0 46.0 1.0 C4B V:HEM201 3.1 46.8 1.0 C1D V:HEM201 3.1 50.1 1.0 C4D V:HEM201 3.1 38.7 1.0 C4A V:HEM201 3.1 46.0 1.0 C1C V:HEM201 3.1 46.3 1.0 C4C V:HEM201 3.1 46.4 1.0 C1A V:HEM201 3.1 49.8 1.0 CD2 V:HIS118 3.3 39.5 1.0 CHB V:HEM201 3.4 44.3 1.0 CHD V:HEM201 3.4 52.1 1.0 CHC V:HEM201 3.4 46.5 1.0 CHA V:HEM201 3.4 39.9 1.0 CD2 V:HIS67 3.4 34.0 1.0 CE1 V:HIS67 4.0 28.8 1.0 CE1 V:HIS118 4.1 45.6 1.0 C2B V:HEM201 4.2 41.9 1.0 C3B V:HEM201 4.2 49.1 1.0 C2D V:HEM201 4.3 45.0 1.0 C3D V:HEM201 4.3 40.6 1.0 C3A V:HEM201 4.3 37.6 1.0 C2A V:HEM201 4.3 43.1 1.0 C2C V:HEM201 4.3 49.6 1.0 C3C V:HEM201 4.3 50.0 1.0 CG V:HIS118 4.5 45.9 1.0 CG V:HIS67 4.7 25.5 1.0 ND1 V:HIS118 4.9 46.5 1.0 ND1 V:HIS67 5.0 31.5 1.0

Iron binding site 4 out of 6 in the Structure of Psii-Acpii Supercomplex From Cryptophyte Algae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Psii-Acpii Supercomplex From Cryptophyte Algae within 5.0Å range: probe atom residue distance (Å) B Occ d:Fe407 b:90.5 occ:1.00 O3 a:BCT401 2.7 97.3 1.0 NE2 d:HIS267 2.8 56.2 1.0 O2 a:BCT401 2.8 98.5 1.0 NE2 a:HIS272 2.9 54.6 1.0 NE2 d:HIS213 2.9 54.8 1.0 C a:BCT401 3.0 100.9 1.0 CE1 d:HIS267 3.1 49.9 1.0 CE1 d:HIS213 3.2 52.8 1.0 OH d:TYR243 3.4 67.0 1.0 CE1 a:HIS272 3.5 54.9 1.0 CE1 a:HIS215 3.5 58.0 1.0 CD2 a:HIS272 4.0 56.4 1.0 CE1 d:TYR243 4.0 59.3 1.0 NE2 a:HIS215 4.1 66.7 1.0 CZ d:TYR243 4.1 62.3 1.0 CD2 d:HIS267 4.1 51.9 1.0 O1 a:BCT401 4.1 99.4 1.0 CD2 d:HIS213 4.2 50.7 1.0 CG2 d:VAL217 4.4 54.0 1.0 ND1 d:HIS267 4.4 52.8 1.0 ND1 d:HIS213 4.5 47.6 1.0 ND1 a:HIS272 4.7 57.7 1.0 ND1 a:HIS215 4.7 60.6 1.0 CD d:LYS263 4.8 57.5 1.0 CG d:HIS267 4.9 48.4 1.0 CG d:LYS263 4.9 56.6 1.0 OH a:TYR246 4.9 84.4 1.0 CG a:HIS272 4.9 53.5 1.0

Iron binding site 5 out of 6 in the Structure of Psii-Acpii Supercomplex From Cryptophyte Algae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Psii-Acpii Supercomplex From Cryptophyte Algae within 5.0Å range: probe atom residue distance (Å) B Occ f:Fe101 b:97.8 occ:1.00 FE f:HEM101 0.0 97.8 1.0 NC f:HEM101 2.0 96.0 1.0 NA f:HEM101 2.1 97.8 1.0 NB f:HEM101 2.1 94.2 1.0 ND f:HEM101 2.1 95.4 1.0 NE2 f:HIS21 2.8 83.2 1.0 NE2 e:HIS24 3.0 105.4 1.0 C1D f:HEM101 3.0 94.1 1.0 C4D f:HEM101 3.0 92.1 1.0 C1A f:HEM101 3.1 94.3 1.0 C1C f:HEM101 3.1 95.1 1.0 C4B f:HEM101 3.1 92.8 1.0 C4C f:HEM101 3.1 95.4 1.0 CE1 f:HIS21 3.1 81.0 1.0 C4A f:HEM101 3.1 96.6 1.0 C1B f:HEM101 3.1 96.5 1.0 CHD f:HEM101 3.4 95.6 1.0 CHA f:HEM101 3.4 90.8 1.0 CHC f:HEM101 3.4 93.1 1.0 CHB f:HEM101 3.5 96.4 1.0 CD2 e:HIS24 3.6 105.5 1.0 CD2 f:HIS21 3.9 82.4 1.0 CE1 e:HIS24 4.2 107.3 1.0 C2D f:HEM101 4.2 91.9 1.0 C3D f:HEM101 4.2 94.1 1.0 ND1 f:HIS21 4.2 83.4 1.0 C2A f:HEM101 4.3 95.3 1.0 C2C f:HEM101 4.3 95.9 1.0 C3A f:HEM101 4.3 93.9 1.0 C3C f:HEM101 4.3 93.2 1.0 C3B f:HEM101 4.3 93.6 1.0 C2B f:HEM101 4.3 94.7 1.0 CG f:HIS21 4.6 81.7 1.0 NE1 f:TRP17 4.8 88.8 1.0 CG e:HIS24 4.8 110.0 1.0

Iron binding site 6 out of 6 in the Structure of Psii-Acpii Supercomplex From Cryptophyte Algae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Psii-Acpii Supercomplex From Cryptophyte Algae within 5.0Å range: probe atom residue distance (Å) B Occ v:Fe201 b:52.6 occ:1.00 FE v:HEM201 0.0 52.6 1.0 NC v:HEM201 2.0 51.0 1.0 NA v:HEM201 2.0 49.7 1.0 ND v:HEM201 2.1 48.3 1.0 NB v:HEM201 2.1 51.1 1.0 NE2 v:HIS67 2.9 34.6 1.0 NE2 v:HIS118 2.9 35.5 1.0 C1B v:HEM201 3.0 45.5 1.0 C1D v:HEM201 3.1 50.2 1.0 C4B v:HEM201 3.1 50.2 1.0 C4A v:HEM201 3.1 46.4 1.0 C4D v:HEM201 3.1 42.8 1.0 C1C v:HEM201 3.1 45.0 1.0 C4C v:HEM201 3.1 50.1 1.0 C1A v:HEM201 3.1 47.5 1.0 CD2 v:HIS118 3.2 32.1 1.0 CHB v:HEM201 3.4 43.5 1.0 CHD v:HEM201 3.4 53.6 1.0 CHC v:HEM201 3.4 49.0 1.0 CHA v:HEM201 3.4 39.8 1.0 CD2 v:HIS67 3.5 38.5 1.0 CE1 v:HIS67 4.0 36.5 1.0 CE1 v:HIS118 4.2 41.2 1.0 C2B v:HEM201 4.2 38.9 1.0 C3B v:HEM201 4.3 47.5 1.0 C2D v:HEM201 4.3 46.0 1.0 C3D v:HEM201 4.3 42.4 1.0 C3A v:HEM201 4.3 37.4 1.0 C2A v:HEM201 4.3 43.3 1.0 C2C v:HEM201 4.3 51.3 1.0 C3C v:HEM201 4.3 50.9 1.0 CG v:HIS118 4.5 41.9 1.0 CG v:HIS67 4.7 31.8 1.0 ND1 v:HIS118 4.9 43.6 1.0 ND1 v:HIS67 5.0 38.9 1.0

Z.Mao, X.Li, Z.Li, L.Shen, X.Li, Y.Yang, W.Wang, T.Kuang, J.R.Shen, G.Han. Structure and Distinct Supramolecular Organization of A Psii-Acpii Dimer From A Cryptophyte Alga Chroomonas Placoidea. Nat Commun V. 15 4535 2024.
ISSN: ESSN 2041-1723
PubMed: 38806516
DOI: 10.1038/S41467-024-48878-X