Iron in PDB 8wey: Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137)

The structure of Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137) also contains other interesting chemical elements:

Magnesium

(Mg)

154 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137) (pdb code 8wey). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137), PDB code: 8wey:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe847 b:20.5 occ:1.00 FE1 A:SF4847 0.0 20.5 1.0 S3 A:SF4847 2.3 20.8 1.0 S4 A:SF4847 2.3 20.4 1.0 SG B:CYS566 2.3 23.3 1.0 S2 A:SF4847 2.3 20.0 1.0 FE2 A:SF4847 2.7 21.5 1.0 FE4 A:SF4847 2.8 20.8 1.0 FE3 A:SF4847 2.8 20.8 1.0 CB B:CYS566 3.3 23.4 1.0 CA B:CYS566 3.8 24.1 1.0 S1 A:SF4847 3.9 21.0 1.0 CD1 A:ILE717 3.9 24.2 1.0 CZ3 B:TRP665 4.0 29.8 1.0 N B:CYS566 4.0 23.8 1.0 CB B:CYS557 4.6 25.9 1.0 CE3 B:TRP665 4.6 28.8 1.0 SG B:CYS557 4.7 22.9 1.0 CG1 A:ILE717 4.7 23.8 1.0 CG2 A:ILE717 4.7 23.5 1.0 SG A:CYS571 4.7 23.3 1.0 SG A:CYS580 4.8 22.5 1.0 NH2 A:ARG721 4.9 25.4 1.0

Iron binding site 2 out of 12 in the Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe847 b:21.5 occ:1.00 FE2 A:SF4847 0.0 21.5 1.0 SG A:CYS580 2.2 22.5 1.0 S4 A:SF4847 2.3 20.4 1.0 S3 A:SF4847 2.3 20.8 1.0 S1 A:SF4847 2.3 21.0 1.0 FE4 A:SF4847 2.7 20.8 1.0 FE3 A:SF4847 2.7 20.8 1.0 FE1 A:SF4847 2.7 20.5 1.0 CB A:CYS580 3.3 22.7 1.0 CA A:CYS580 3.8 22.4 1.0 S2 A:SF4847 3.9 20.0 1.0 CD1 B:ILE700 4.1 24.8 1.0 N A:CYS580 4.1 22.9 1.0 CE3 B:TRP665 4.2 28.8 1.0 CB A:CYS571 4.4 22.5 1.0 CZ3 B:TRP665 4.4 29.8 1.0 SG A:CYS571 4.6 23.3 1.0 CG1 B:ILE700 4.7 25.2 1.0 SG B:CYS557 4.7 22.9 1.0 SG B:CYS566 4.8 23.3 1.0 CG2 B:ILE700 4.9 25.8 1.0 NH2 A:ARG721 5.0 25.4 1.0

Iron binding site 3 out of 12 in the Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe847 b:20.8 occ:1.00 FE3 A:SF4847 0.0 20.8 1.0 SG A:CYS571 2.2 23.3 1.0 S2 A:SF4847 2.3 20.0 1.0 S1 A:SF4847 2.3 21.0 1.0 S4 A:SF4847 2.3 20.4 1.0 FE4 A:SF4847 2.7 20.8 1.0 FE2 A:SF4847 2.7 21.5 1.0 FE1 A:SF4847 2.8 20.5 1.0 CB A:CYS571 3.0 22.5 1.0 S3 A:SF4847 3.9 20.8 1.0 CA A:CYS571 4.4 23.8 1.0 CA A:GLY573 4.4 23.7 1.0 CD B:PRO560 4.4 25.6 1.0 N A:GLY573 4.5 24.0 1.0 CD1 A:ILE717 4.5 24.2 1.0 N B:PRO560 4.5 26.2 1.0 SG A:CYS580 4.6 22.5 1.0 CB B:PRO560 4.7 25.6 1.0 SG B:CYS557 4.7 22.9 1.0 C A:GLY573 4.8 24.1 1.0 SG B:CYS566 4.8 23.3 1.0 C B:GLY559 4.8 26.3 1.0 N A:CYS571 4.8 23.3 1.0 CA A:CYS580 4.9 22.4 1.0 CA B:PRO560 4.9 25.7 1.0 CA B:GLY559 4.9 26.9 1.0 O A:PRO570 4.9 24.1 1.0 CG B:PRO560 4.9 25.9 1.0 C A:PRO570 4.9 23.6 1.0

Iron binding site 4 out of 12 in the Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe847 b:20.8 occ:1.00 FE4 A:SF4847 0.0 20.8 1.0 SG B:CYS557 2.2 22.9 1.0 S2 A:SF4847 2.3 20.0 1.0 S1 A:SF4847 2.3 21.0 1.0 S3 A:SF4847 2.3 20.8 1.0 FE3 A:SF4847 2.7 20.8 1.0 FE2 A:SF4847 2.7 21.5 1.0 FE1 A:SF4847 2.8 20.5 1.0 CB B:CYS557 3.1 25.9 1.0 S4 A:SF4847 3.9 20.4 1.0 CA B:GLY559 4.4 26.9 1.0 N B:GLY559 4.4 27.1 1.0 CD1 B:ILE700 4.5 24.8 1.0 CA B:CYS557 4.5 26.3 1.0 CD A:PRO574 4.5 25.2 1.0 N A:PRO574 4.5 24.5 1.0 CB A:PRO574 4.6 25.4 1.0 SG A:CYS580 4.7 22.5 1.0 SG A:CYS571 4.7 23.3 1.0 SG B:CYS566 4.8 23.3 1.0 C B:GLY559 4.8 26.3 1.0 CA A:PRO574 4.8 25.1 1.0 C A:GLY573 4.9 24.1 1.0 N B:CYS557 4.9 27.1 1.0 CA B:CYS566 4.9 24.1 1.0 CG A:PRO574 5.0 24.9 1.0 O B:PRO556 5.0 29.8 1.0

Iron binding site 5 out of 12 in the Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137) within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:26.1 occ:1.00 FE1 C:SF4101 0.0 26.1 1.0 SG C:CYS51 2.3 27.3 1.0 S3 C:SF4101 2.3 26.5 1.0 S2 C:SF4101 2.3 24.6 1.0 S4 C:SF4101 2.3 26.1 1.0 FE2 C:SF4101 2.7 26.2 1.0 FE4 C:SF4101 2.7 24.4 1.0 FE3 C:SF4101 2.8 25.8 1.0 N C:CYS51 3.4 26.7 1.0 CB C:CYS51 3.5 28.3 1.0 N C:LYS52 3.6 26.5 1.0 CA C:CYS51 3.9 26.2 1.0 S1 C:SF4101 3.9 25.6 1.0 C C:CYS51 4.1 27.3 1.0 CD C:PRO22 4.2 28.9 1.0 N C:ARG53 4.2 27.5 1.0 N C:GLY50 4.3 26.6 1.0 C C:GLY50 4.3 26.4 1.0 CG2 C:VAL49 4.5 27.0 1.0 CA C:LYS52 4.5 27.4 1.0 SG C:CYS48 4.6 27.6 1.0 CA C:GLY50 4.6 27.2 1.0 SG C:CYS54 4.7 27.8 1.0 SG C:CYS21 4.8 28.5 1.0 CG C:PRO22 4.8 29.4 1.0 C C:LYS52 4.9 26.4 1.0 N C:VAL49 4.9 26.1 1.0 CB C:ARG53 4.9 28.8 1.0

Iron binding site 6 out of 12 in the Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137) within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:26.2 occ:1.00 FE2 C:SF4101 0.0 26.2 1.0 S1 C:SF4101 2.3 25.6 1.0 S4 C:SF4101 2.3 26.1 1.0 S3 C:SF4101 2.3 26.5 1.0 SG C:CYS21 2.3 28.5 1.0 FE1 C:SF4101 2.7 26.1 1.0 FE4 C:SF4101 2.7 24.4 1.0 FE3 C:SF4101 2.7 25.8 1.0 CB C:CYS21 3.3 28.6 1.0 CA C:CYS21 3.8 29.5 1.0 S2 C:SF4101 3.9 24.6 1.0 CG2 C:VAL25 3.9 30.5 1.0 CD C:PRO22 4.1 28.9 1.0 CB C:VAL25 4.1 30.3 1.0 C C:CYS21 4.5 29.7 1.0 N C:PRO22 4.5 30.1 1.0 SG C:CYS51 4.6 27.3 1.0 CB C:LEU23 4.7 32.2 1.0 N C:LEU23 4.8 30.3 1.0 SG C:CYS48 4.8 27.6 1.0 SG C:CYS54 4.8 27.8 1.0 CD1 C:LEU26 4.8 32.0 1.0 CG1 C:VAL25 4.9 30.1 1.0 CG C:LEU26 4.9 32.2 1.0 N C:VAL25 5.0 32.6 1.0

Iron binding site 7 out of 12 in the Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137) within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:25.8 occ:1.00 FE3 C:SF4101 0.0 25.8 1.0 S1 C:SF4101 2.3 25.6 1.0 S4 C:SF4101 2.3 26.1 1.0 S2 C:SF4101 2.3 24.6 1.0 SG C:CYS54 2.3 27.8 1.0 FE2 C:SF4101 2.7 26.2 1.0 FE1 C:SF4101 2.8 26.1 1.0 FE4 C:SF4101 2.8 24.4 1.0 CB C:CYS54 3.3 27.4 1.0 S3 C:SF4101 3.9 26.5 1.0 N C:CYS54 3.9 27.8 1.0 CG2 C:VAL67 4.0 30.1 1.0 CA C:CYS54 4.2 27.6 1.0 N C:LYS52 4.4 26.5 1.0 CA C:LYS52 4.5 27.4 1.0 N C:ARG53 4.6 27.5 1.0 SG C:CYS51 4.6 27.3 1.0 SG C:CYS48 4.7 27.6 1.0 CD1 C:LEU26 4.7 32.0 1.0 SG C:CYS21 4.8 28.5 1.0 C C:LYS52 4.8 26.4 1.0

Iron binding site 8 out of 12 in the Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137) within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:24.4 occ:1.00 FE4 C:SF4101 0.0 24.4 1.0 SG C:CYS48 2.2 27.6 1.0 S2 C:SF4101 2.3 24.6 1.0 S1 C:SF4101 2.3 25.6 1.0 S3 C:SF4101 2.3 26.5 1.0 FE1 C:SF4101 2.7 26.1 1.0 FE2 C:SF4101 2.7 26.2 1.0 FE3 C:SF4101 2.8 25.8 1.0 CB C:CYS48 3.3 27.7 1.0 CA C:CYS48 3.7 29.0 1.0 N C:GLY50 3.9 26.6 1.0 S4 C:SF4101 3.9 26.1 1.0 N C:VAL49 4.0 26.1 1.0 CG2 C:VAL25 4.2 30.5 1.0 C C:CYS48 4.2 27.8 1.0 CA C:GLY50 4.3 27.2 1.0 CG2 C:VAL5 4.4 32.9 1.0 CB C:VAL25 4.7 30.3 1.0 N C:CYS51 4.7 26.7 1.0 CG1 C:VAL25 4.8 30.1 1.0 SG C:CYS21 4.8 28.5 1.0 SG C:CYS54 4.9 27.8 1.0 CG1 C:VAL67 4.9 29.6 1.0 C C:VAL49 4.9 27.5 1.0 SG C:CYS51 4.9 27.3 1.0 CG2 C:VAL67 5.0 30.1 1.0 C C:GLY50 5.0 26.4 1.0

Iron binding site 9 out of 12 in the Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137) within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:28.9 occ:1.00 FE1 C:SF4102 0.0 28.9 1.0 S3 C:SF4102 2.3 29.2 1.0 S4 C:SF4102 2.3 31.0 1.0 S2 C:SF4102 2.3 30.6 1.0 SG C:CYS58 2.3 32.7 1.0 FE2 C:SF4102 2.7 30.8 1.0 FE4 C:SF4102 2.7 29.5 1.0 FE3 C:SF4102 2.7 32.1 1.0 CB C:CYS58 3.3 30.9 1.0 CA C:CYS58 3.8 31.4 1.0 S1 C:SF4102 3.9 30.4 1.0 CD C:PRO59 4.0 34.2 1.0 CB C:SER64 4.0 32.1 1.0 CG2 C:ILE65 4.3 29.3 1.0 SG C:CYS14 4.4 33.3 1.0 C C:CYS58 4.6 32.4 1.0 OG C:SER64 4.6 33.3 1.0 N C:ILE65 4.6 30.7 1.0 N C:PRO59 4.6 33.9 1.0 SG C:CYS17 4.8 31.1 1.0 N C:SER64 4.8 31.4 1.0 CA C:SER64 4.8 32.2 1.0 CG2 C:THR60 4.8 36.1 1.0 SG C:CYS11 4.9 32.1 1.0 CB C:ILE65 4.9 30.3 1.0 CB C:CYS17 4.9 31.2 1.0 C C:SER64 4.9 31.5 1.0 N C:CYS58 4.9 31.9 1.0 OG1 C:THR60 4.9 36.0 1.0

Iron binding site 10 out of 12 in the Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Psi-Lhci of the Red Alga Cyanidium Caldarium Rk-1 (Nies-2137) within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:30.8 occ:1.00 FE2 C:SF4102 0.0 30.8 1.0 S4 C:SF4102 2.2 31.0 1.0 SG C:CYS17 2.3 31.1 1.0 S3 C:SF4102 2.3 29.2 1.0 S1 C:SF4102 2.3 30.4 1.0 FE4 C:SF4102 2.7 29.5 1.0 FE1 C:SF4102 2.7 28.9 1.0 FE3 C:SF4102 2.7 32.1 1.0 CB C:CYS17 3.1 31.2 1.0 CB C:ALA40 3.8 34.2 1.0 N C:CYS17 3.8 31.5 1.0 S2 C:SF4102 3.9 30.6 1.0 CA C:CYS17 4.1 31.3 1.0 SG C:CYS14 4.5 33.3 1.0 N C:GLN16 4.6 34.3 1.0 SG C:CYS11 4.6 32.1 1.0 CG2 C:ILE65 4.7 29.3 1.0 SG C:CYS58 4.8 32.7 1.0 N C:THR15 4.8 32.5 1.0 N C:VAL18 4.9 32.3 1.0 C C:THR15 5.0 34.4 1.0 CB C:ILE65 5.0 30.3 1.0 C C:GLN16 5.0 32.5 1.0

K.Kato, T.Hamaguchi, M.Kumazawa, Y.Nakajima, K.Ifuku, S.Hirooka, S.Miyagishima, T.Suzuki, K.Kawakami, N.Dohmae, K.Yonekura, J.R.Shen, R.Nagao. Structure of Psi-Lhci From Cyanidium Caldarium Provides Evolutionary Insights Into Conservation and Diversity of Red-Lineage Lhcs To Be Published.