Iron in PDB 8wgh: Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci

All present enzymatic activity of Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci:
1.97.1.12;

The structure of Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci also contains other interesting chemical elements:

Magnesium

(Mg)

162 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci (pdb code 8wgh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci, PDB code: 8wgh:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:60.2 occ:1.00 FE1 A:SF4850 0.0 60.2 1.0 S4 A:SF4850 2.1 60.2 1.0 S2 A:SF4850 2.1 60.2 1.0 S3 A:SF4850 2.1 60.2 1.0 SG B:CYS568 2.9 44.7 1.0 FE4 A:SF4850 3.0 60.2 1.0 FE3 A:SF4850 3.0 60.2 1.0 FE2 A:SF4850 3.0 60.2 1.0 CD1 A:ILE719 3.5 39.2 1.0 S1 A:SF4850 3.7 60.2 1.0 CB B:CYS568 4.1 44.7 1.0 CG2 A:ILE719 4.1 39.2 1.0 CG1 A:ILE719 4.3 39.2 1.0 SG A:CYS573 4.3 39.2 1.0 CZ3 B:TRP667 4.3 39.2 1.0 CA B:CYS568 4.5 44.7 1.0 N B:CYS568 4.7 44.7 1.0 CB A:ILE719 4.8 39.2 1.0 NH2 A:ARG723 5.0 39.2 1.0

Iron binding site 2 out of 12 in the Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:60.2 occ:1.00 FE2 A:SF4850 0.0 60.2 1.0 S3 A:SF4850 2.1 60.2 1.0 S1 A:SF4850 2.1 60.2 1.0 S4 A:SF4850 2.1 60.2 1.0 SG A:CYS582 3.0 39.2 1.0 FE3 A:SF4850 3.0 60.2 1.0 FE1 A:SF4850 3.0 60.2 1.0 FE4 A:SF4850 3.0 60.2 1.0 S2 A:SF4850 3.7 60.2 1.0 CZ3 B:TRP667 3.7 39.2 1.0 CE3 B:TRP667 4.0 39.2 1.0 CB A:CYS582 4.1 39.2 1.0 CD1 B:ILE702 4.4 39.2 1.0 CG2 B:ILE702 4.7 39.2 1.0 CH2 B:TRP667 4.7 39.2 1.0 SG B:CYS559 4.8 41.6 1.0 NH2 B:ARG706 4.8 39.2 1.0

Iron binding site 3 out of 12 in the Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:60.2 occ:1.00 FE3 A:SF4850 0.0 60.2 1.0 S1 A:SF4850 2.1 60.2 1.0 S4 A:SF4850 2.1 60.2 1.0 S2 A:SF4850 2.1 60.2 1.0 SG A:CYS573 2.9 39.2 1.0 FE4 A:SF4850 3.0 60.2 1.0 FE2 A:SF4850 3.0 60.2 1.0 FE1 A:SF4850 3.0 60.2 1.0 CB A:CYS573 3.1 39.2 1.0 S3 A:SF4850 3.7 60.2 1.0 SG A:CYS582 4.0 39.2 1.0 C A:GLY575 4.3 39.2 1.0 O A:GLY575 4.4 39.2 1.0 N A:GLY575 4.5 39.2 1.0 CA A:GLY575 4.5 39.2 1.0 CA A:CYS573 4.6 39.2 1.0 CA A:CYS582 4.6 39.2 1.0 CB A:CYS582 4.7 39.2 1.0 N A:PRO576 4.8 39.2 1.0 N A:CYS582 4.9 39.2 1.0 O A:THR581 5.0 39.2 1.0

Iron binding site 4 out of 12 in the Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:60.2 occ:1.00 FE4 A:SF4850 0.0 60.2 1.0 S2 A:SF4850 2.1 60.2 1.0 S3 A:SF4850 2.1 60.2 1.0 S1 A:SF4850 2.1 60.2 1.0 SG B:CYS559 2.9 41.6 1.0 FE1 A:SF4850 3.0 60.2 1.0 FE3 A:SF4850 3.0 60.2 1.0 CB B:CYS559 3.0 41.6 1.0 FE2 A:SF4850 3.0 60.2 1.0 S4 A:SF4850 3.7 60.2 1.0 N B:GLY561 4.2 39.2 1.0 CA B:GLY561 4.2 39.2 1.0 C B:GLY561 4.3 39.2 1.0 O B:GLY561 4.3 39.2 1.0 O B:THR567 4.4 39.2 1.0 CA B:CYS559 4.5 41.6 1.0 C B:THR567 4.7 39.2 1.0 OG1 B:THR567 4.8 39.2 1.0 CA B:CYS568 4.8 44.7 1.0 N B:CYS568 4.9 44.7 1.0 N B:PRO562 4.9 39.2 1.0 SG B:CYS568 5.0 44.7 1.0

Iron binding site 5 out of 12 in the Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:65.6 occ:1.00 FE1 C:SF4101 0.0 65.6 1.0 S2 C:SF4101 2.1 65.6 1.0 S3 C:SF4101 2.1 65.6 1.0 S4 C:SF4101 2.1 65.6 1.0 SG C:CYS51 3.0 39.2 1.0 FE4 C:SF4101 3.0 65.6 1.0 FE2 C:SF4101 3.0 65.6 1.0 FE3 C:SF4101 3.0 65.6 1.0 N C:CYS51 3.3 39.2 1.0 N C:LYS52 3.5 39.2 1.0 S1 C:SF4101 3.7 65.6 1.0 N C:GLY50 3.9 39.2 1.0 CB C:CYS51 4.0 39.2 1.0 CA C:CYS51 4.0 39.2 1.0 C C:CYS51 4.1 39.2 1.0 C C:GLY50 4.1 39.2 1.0 CG2 C:VAL49 4.1 39.7 1.0 N C:ARG53 4.2 39.2 1.0 CD C:PRO22 4.3 39.2 1.0 CA C:GLY50 4.3 39.2 1.0 CA C:LYS52 4.4 39.2 1.0 CG C:PRO22 4.5 39.2 1.0 N C:VAL49 4.7 39.7 1.0 C C:LYS52 4.9 39.2 1.0 C C:VAL49 4.9 39.7 1.0 SG C:CYS48 4.9 41.0 1.0

Iron binding site 6 out of 12 in the Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:65.6 occ:1.00 FE2 C:SF4101 0.0 65.6 1.0 S4 C:SF4101 2.1 65.6 1.0 S1 C:SF4101 2.1 65.6 1.0 S3 C:SF4101 2.1 65.6 1.0 SG C:CYS21 3.0 42.6 1.0 FE3 C:SF4101 3.0 65.6 1.0 FE1 C:SF4101 3.0 65.6 1.0 FE4 C:SF4101 3.0 65.6 1.0 CB C:CYS21 3.5 42.6 1.0 CA C:CYS21 3.6 42.6 1.0 S2 C:SF4101 3.7 65.6 1.0 CD C:PRO22 3.8 39.2 1.0 CD1 C:LEU26 4.3 40.2 1.0 N C:PRO22 4.5 39.2 1.0 C C:CYS21 4.6 42.6 1.0 CB C:VAL25 4.6 39.3 1.0 N C:CYS21 4.6 42.6 1.0 CG C:LEU26 4.7 40.2 1.0 CG2 C:VAL25 4.8 39.3 1.0 CG C:PRO22 4.8 39.2 1.0 CB C:CYS54 4.9 42.5 1.0 OG1 C:THR23 4.9 41.3 1.0 SG C:CYS54 4.9 42.5 1.0 O C:ALA20 5.0 39.2 1.0

Iron binding site 7 out of 12 in the Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:65.6 occ:1.00 FE3 C:SF4101 0.0 65.6 1.0 S2 C:SF4101 2.1 65.6 1.0 S1 C:SF4101 2.1 65.6 1.0 S4 C:SF4101 2.1 65.6 1.0 SG C:CYS54 3.0 42.5 1.0 FE2 C:SF4101 3.0 65.6 1.0 FE1 C:SF4101 3.0 65.6 1.0 FE4 C:SF4101 3.0 65.6 1.0 CG2 C:VAL67 3.4 39.2 1.0 S3 C:SF4101 3.7 65.6 1.0 CB C:CYS54 4.0 42.5 1.0 CA C:LYS52 4.3 39.2 1.0 N C:CYS54 4.4 42.5 1.0 N C:LYS52 4.4 39.2 1.0 CB C:VAL67 4.6 39.2 1.0 N C:ARG53 4.7 39.2 1.0 CG1 C:VAL67 4.7 39.2 1.0 CG2 C:VAL5 4.7 39.2 1.0 C C:LYS52 4.8 39.2 1.0 CA C:CYS54 4.9 42.5 1.0

Iron binding site 8 out of 12 in the Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:65.6 occ:1.00 FE4 C:SF4101 0.0 65.6 1.0 S1 C:SF4101 2.1 65.6 1.0 S3 C:SF4101 2.1 65.6 1.0 S2 C:SF4101 2.1 65.6 1.0 SG C:CYS48 3.0 41.0 1.0 FE1 C:SF4101 3.0 65.6 1.0 FE2 C:SF4101 3.0 65.6 1.0 FE3 C:SF4101 3.0 65.6 1.0 CB C:CYS48 3.4 41.0 1.0 CA C:CYS48 3.6 41.0 1.0 S4 C:SF4101 3.7 65.6 1.0 CG2 C:VAL25 4.0 39.3 1.0 N C:VAL49 4.0 39.7 1.0 CB C:VAL25 4.3 39.3 1.0 N C:GLY50 4.3 39.2 1.0 CG2 C:VAL5 4.3 39.2 1.0 C C:CYS48 4.3 41.0 1.0 CG1 C:VAL25 4.5 39.3 1.0 OG1 C:THR23 4.8 41.3 1.0 N C:CYS48 4.8 41.0 1.0 SG C:CYS21 4.9 42.6 1.0 CA C:GLY50 5.0 39.2 1.0

Iron binding site 9 out of 12 in the Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:64.2 occ:1.00 FE1 C:SF4102 0.0 64.2 1.0 S2 C:SF4102 2.1 64.2 1.0 S3 C:SF4102 2.1 64.2 1.0 S4 C:SF4102 2.1 64.2 1.0 SG C:CYS58 3.0 43.3 1.0 FE4 C:SF4102 3.0 64.2 1.0 FE2 C:SF4102 3.0 64.2 1.0 FE3 C:SF4102 3.0 64.2 1.0 CD C:PRO59 3.6 39.2 1.0 S1 C:SF4102 3.7 64.2 1.0 CB C:SER64 3.9 39.2 1.0 CG2 C:THR60 4.0 40.1 1.0 CA C:CYS58 4.0 43.3 1.0 CB C:CYS58 4.1 43.3 1.0 N C:PRO59 4.3 39.2 1.0 CG C:PRO59 4.4 39.2 1.0 C C:CYS58 4.6 43.3 1.0 OG1 C:THR60 4.7 40.1 1.0 OG C:SER64 4.8 39.2 1.0 CG1 C:VAL65 4.8 39.2 1.0 N C:THR60 4.8 40.1 1.0 N C:SER64 4.8 39.2 1.0 CA C:SER64 4.9 39.2 1.0 CB C:THR60 5.0 40.1 1.0

Iron binding site 10 out of 12 in the Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:64.2 occ:1.00 FE2 C:SF4102 0.0 64.2 1.0 S3 C:SF4102 2.1 64.2 1.0 S4 C:SF4102 2.1 64.2 1.0 S1 C:SF4102 2.1 64.2 1.0 SG C:CYS17 2.9 45.9 1.0 FE3 C:SF4102 3.0 64.2 1.0 FE1 C:SF4102 3.0 64.2 1.0 FE4 C:SF4102 3.0 64.2 1.0 CB C:CYS17 3.1 45.9 1.0 S2 C:SF4102 3.7 64.2 1.0 N C:CYS17 3.9 45.9 1.0 CA C:CYS17 4.1 45.9 1.0 CG1 C:VAL65 4.1 39.2 1.0 CB C:ALA40 4.4 39.2 1.0 CB C:VAL65 4.5 39.2 1.0 SG C:CYS58 4.8 43.3 1.0

G.Q.Huang, X.X.Li, S.F.Sui, X.C.Qin. Cryo-Em Structure of the Red-Shifted Fittonia Albivenis Psi-Lhci To Be Published.