Atomistry » Iron » PDB 8wgh-8xcg » 8wm2
Atomistry »
  Iron »
    PDB 8wgh-8xcg »
      8wm2 »

Iron in PDB 8wm2: Crystal Structure of Abmm

Protein crystallography data

The structure of Crystal Structure of Abmm, PDB code: 8wm2 was solved by R.Ushimaru, T.Mori, I.Abe, H.-W.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.24 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.79, 81.026, 131.842, 90, 90, 90
R / Rfree (%) 22.9 / 27.9

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Abmm (pdb code 8wm2). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Crystal Structure of Abmm, PDB code: 8wm2:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 8wm2

Go back to Iron Binding Sites List in 8wm2
Iron binding site 1 out of 8 in the Crystal Structure of Abmm


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Abmm within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:39.0
occ:1.00
 FE1 A:SF4401 0.0 39.0 1.0
S3 A:SF4401 2.1 32.5 1.0
S2 A:SF4401 2.1 34.8 1.0
S4 A:SF4401 2.1 38.3 1.0
SG A:CYS267 2.3 41.9 1.0
FE2 A:SF4401 3.0 43.7 1.0
FE3 A:SF4401 3.0 41.9 1.0
FE4 A:SF4401 3.0 41.8 1.0
CB A:CYS267 3.0 36.1 1.0
CA A:CYS267 3.4 35.3 1.0
S1 A:SF4401 3.7 30.8 1.0
N A:CYS267 3.8 38.0 1.0
CB A:PRO262 4.1 42.5 1.0
O A:ASP322 4.2 41.4 1.0
NH2 A:ARG266 4.2 36.6 1.0
C A:ARG266 4.4 40.5 1.0
CG A:PRO262 4.7 43.3 1.0
CZ A:ARG266 4.7 43.0 1.0
CB A:CYS270 4.8 30.6 1.0
C A:CYS267 4.8 39.0 1.0
O A:ARG266 4.9 46.1 1.0
CB A:ARG266 4.9 41.3 1.0
SG A:CYS270 4.9 38.4 1.0
SG A:CYS276 5.0 43.1 1.0
NE A:ARG266 5.0 45.0 1.0

Iron binding site 2 out of 8 in 8wm2

Go back to Iron Binding Sites List in 8wm2
Iron binding site 2 out of 8 in the Crystal Structure of Abmm


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Abmm within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:43.7
occ:1.00
 FE2 A:SF4401 0.0 43.7 1.0
S1 A:SF4401 2.1 30.8 1.0
S4 A:SF4401 2.1 38.3 1.0
S3 A:SF4401 2.1 32.5 1.0
SG A:CYS276 2.3 43.1 1.0
CB A:CYS276 2.9 39.6 1.0
FE3 A:SF4401 3.0 41.9 1.0
FE1 A:SF4401 3.0 39.0 1.0
FE4 A:SF4401 3.0 41.8 1.0
S2 A:SF4401 3.7 34.8 1.0
CB A:PRO262 4.0 42.5 1.0
O A:HOH534 4.2 40.3 1.0
CG A:PRO262 4.2 43.3 1.0
CA A:CYS276 4.3 37.5 1.0
CB A:ALA296 4.8 40.1 1.0
SG A:CYS267 4.8 41.9 1.0
CB A:CYS294 5.0 33.4 1.0

Iron binding site 3 out of 8 in 8wm2

Go back to Iron Binding Sites List in 8wm2
Iron binding site 3 out of 8 in the Crystal Structure of Abmm


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Abmm within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:41.9
occ:1.00
 FE3 A:SF4401 0.0 41.9 1.0
S4 A:SF4401 2.1 38.3 1.0
S1 A:SF4401 2.1 30.8 1.0
S2 A:SF4401 2.1 34.8 1.0
SG A:CYS294 2.3 43.3 1.0
FE2 A:SF4401 3.0 43.7 1.0
CB A:CYS294 3.0 33.4 1.0
FE1 A:SF4401 3.0 39.0 1.0
FE4 A:SF4401 3.0 41.8 1.0
NH2 A:ARG266 3.6 36.6 1.0
S3 A:SF4401 3.7 32.5 1.0
CZ A:ARG266 4.1 43.0 1.0
NH1 A:ARG266 4.1 40.3 1.0
CG2 A:THR297 4.2 40.1 1.0
CA A:CYS294 4.3 39.3 1.0
CD1 A:TRP300 4.8 40.4 1.0
SG A:CYS276 5.0 43.1 1.0
NE A:ARG266 5.0 45.0 1.0
O A:ASP322 5.0 41.4 1.0

Iron binding site 4 out of 8 in 8wm2

Go back to Iron Binding Sites List in 8wm2
Iron binding site 4 out of 8 in the Crystal Structure of Abmm


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Abmm within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:41.8
occ:1.00
 FE4 A:SF4401 0.0 41.8 1.0
S2 A:SF4401 2.1 34.8 1.0
S1 A:SF4401 2.1 30.8 1.0
S3 A:SF4401 2.1 32.5 1.0
SG A:CYS270 2.3 38.4 1.0
FE1 A:SF4401 3.0 39.0 1.0
FE3 A:SF4401 3.0 41.9 1.0
FE2 A:SF4401 3.0 43.7 1.0
CB A:CYS270 3.1 30.6 1.0
S4 A:SF4401 3.7 38.3 1.0
CG2 A:THR297 4.1 40.1 1.0
O A:HOH536 4.2 32.2 1.0
CA A:CYS270 4.6 37.8 1.0
CB A:THR297 4.6 41.5 1.0
N A:ALA273 4.6 36.7 1.0
C A:ASP272 4.7 35.4 1.0
CA A:CYS267 4.7 35.3 1.0
CA A:ALA273 4.7 38.1 1.0
O A:ASP272 4.9 39.2 1.0
CB A:CYS276 5.0 39.6 1.0

Iron binding site 5 out of 8 in 8wm2

Go back to Iron Binding Sites List in 8wm2
Iron binding site 5 out of 8 in the Crystal Structure of Abmm


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Abmm within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:60.4
occ:1.00
 FE1 B:SF4401 0.0 60.4 1.0
S2 B:SF4401 2.1 55.0 1.0
S4 B:SF4401 2.1 49.2 1.0
S3 B:SF4401 2.1 56.0 1.0
SG B:CYS270 2.3 60.5 1.0
FE4 B:SF4401 3.0 57.5 1.0
FE3 B:SF4401 3.0 59.2 1.0
FE2 B:SF4401 3.0 52.9 1.0
CB B:CYS270 3.1 65.8 1.0
S1 B:SF4401 3.7 47.5 1.0
CG2 B:THR297 3.9 45.2 1.0
CB B:THR297 4.3 52.6 1.0
CA B:ALA273 4.5 60.1 1.0
N B:ALA273 4.5 65.4 1.0
CA B:CYS270 4.5 65.2 1.0
CB B:ALA273 4.7 56.5 1.0
C B:ASP272 4.8 64.7 1.0
CA B:CYS267 4.9 62.3 1.0
O B:ASP272 5.0 63.9 1.0

Iron binding site 6 out of 8 in 8wm2

Go back to Iron Binding Sites List in 8wm2
Iron binding site 6 out of 8 in the Crystal Structure of Abmm


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Abmm within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:52.9
occ:1.00
 FE2 B:SF4401 0.0 52.9 1.0
S1 B:SF4401 2.1 47.5 1.0
S4 B:SF4401 2.1 49.2 1.0
S3 B:SF4401 2.1 56.0 1.0
SG B:CYS276 2.3 55.9 1.0
CB B:CYS276 3.0 54.8 1.0
FE3 B:SF4401 3.0 59.2 1.0
FE4 B:SF4401 3.0 57.5 1.0
FE1 B:SF4401 3.0 60.4 1.0
S2 B:SF4401 3.7 55.0 1.0
CG B:PRO262 4.0 56.2 1.0
CB B:PRO262 4.1 55.2 1.0
CA B:CYS276 4.3 66.6 1.0
CB B:ALA296 4.6 56.3 1.0
SG B:CYS267 4.8 63.9 1.0
O B:HOH503 4.9 57.3 1.0
CA B:ALA273 4.9 60.1 1.0

Iron binding site 7 out of 8 in 8wm2

Go back to Iron Binding Sites List in 8wm2
Iron binding site 7 out of 8 in the Crystal Structure of Abmm


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of Abmm within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:59.2
occ:1.00
 FE3 B:SF4401 0.0 59.2 1.0
S1 B:SF4401 2.1 47.5 1.0
S4 B:SF4401 2.1 49.2 1.0
S2 B:SF4401 2.1 55.0 1.0
SG B:CYS267 2.3 63.9 1.0
FE2 B:SF4401 3.0 52.9 1.0
FE1 B:SF4401 3.0 60.4 1.0
FE4 B:SF4401 3.0 57.5 1.0
CB B:CYS267 3.4 61.7 1.0
CA B:CYS267 3.7 62.3 1.0
S3 B:SF4401 3.7 56.0 1.0
O B:ASP322 4.0 57.4 1.0
N B:CYS267 4.1 64.0 1.0
CB B:PRO262 4.2 55.2 1.0
NH1 B:ARG266 4.3 55.7 1.0
CB B:CYS270 4.6 65.8 1.0
CG B:ARG266 4.7 60.3 1.0
CG B:PRO262 4.7 56.2 1.0
C B:ARG266 4.8 66.8 1.0
CZ B:ARG266 4.8 60.2 1.0
SG B:CYS270 4.9 60.5 1.0
SG B:CYS294 4.9 63.9 1.0
SG B:CYS276 4.9 55.9 1.0
O B:ARG266 5.0 70.6 1.0

Iron binding site 8 out of 8 in 8wm2

Go back to Iron Binding Sites List in 8wm2
Iron binding site 8 out of 8 in the Crystal Structure of Abmm


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of Abmm within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:57.5
occ:1.00
 FE4 B:SF4401 0.0 57.5 1.0
S2 B:SF4401 2.1 55.0 1.0
S1 B:SF4401 2.1 47.5 1.0
S3 B:SF4401 2.1 56.0 1.0
SG B:CYS294 2.3 63.9 1.0
CB B:CYS294 2.9 51.1 1.0
FE1 B:SF4401 3.0 60.4 1.0
FE2 B:SF4401 3.0 52.9 1.0
FE3 B:SF4401 3.0 59.2 1.0
NH1 B:ARG266 3.3 55.7 1.0
S4 B:SF4401 3.7 49.2 1.0
CG2 B:THR297 3.9 45.2 1.0
CA B:CYS294 4.2 53.4 1.0
CZ B:ARG266 4.3 60.2 1.0
NH2 B:ARG266 4.5 59.0 1.0
CD1 B:TRP300 4.7 51.9 1.0
NE1 B:TRP300 4.8 55.2 1.0

Reference:

R.Ushimaru, T.Mori, I.Abe, H.-W.Liu. Crystal Structure of Abmm To Be Published.
Page generated: Fri Aug 8 00:32:05 2025

Last articles

Fe in 9CJB
Fe in 9C0T
Fe in 9CG2
Fe in 9CG1
Fe in 9CDR
Fe in 9CE0
Fe in 9CCB
Fe in 9C91
Fe in 9CA3
Fe in 9C19
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy