Iron in PDB 8wm6: The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution

The structure of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution also contains other interesting chemical elements:

Magnesium

(Mg)

277 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution (pdb code 8wm6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution, PDB code: 8wm6:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:7.7 occ:1.00 FE1 A:SF4853 0.0 7.7 1.0 SG B:CYS567 2.1 7.4 1.0 S4 A:SF4853 2.2 7.7 1.0 S2 A:SF4853 2.2 7.7 1.0 S3 A:SF4853 2.2 7.7 1.0 FE2 A:SF4853 2.7 7.7 1.0 FE3 A:SF4853 2.7 7.7 1.0 FE4 A:SF4853 2.7 7.7 1.0 CB B:CYS567 3.2 7.4 1.0 CA B:CYS567 3.7 7.4 1.0 S1 A:SF4853 3.8 7.7 1.0 N B:CYS567 4.0 7.4 1.0 CD1 A:ILE723 4.0 7.0 1.0 CZ3 B:TRP666 4.2 8.6 1.0 SG A:CYS586 4.5 7.2 1.0 SG B:CYS558 4.5 6.2 1.0 CB B:CYS558 4.6 6.2 1.0 CG2 A:ILE723 4.6 7.0 1.0 SG A:CYS577 4.6 5.0 1.0 C B:THR566 4.8 6.4 1.0 CG1 A:ILE723 4.8 7.0 1.0 CE3 B:TRP666 4.9 8.6 1.0

Iron binding site 2 out of 12 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:7.7 occ:1.00 FE2 A:SF4853 0.0 7.7 1.0 SG A:CYS586 2.0 7.2 1.0 S3 A:SF4853 2.2 7.7 1.0 S1 A:SF4853 2.2 7.7 1.0 S4 A:SF4853 2.2 7.7 1.0 FE4 A:SF4853 2.7 7.7 1.0 FE1 A:SF4853 2.7 7.7 1.0 FE3 A:SF4853 2.7 7.7 1.0 CB A:CYS586 3.2 7.2 1.0 CA A:CYS586 3.7 7.2 1.0 S2 A:SF4853 3.8 7.7 1.0 N A:CYS586 4.2 7.2 1.0 CD1 B:ILE701 4.3 6.6 1.0 CB A:CYS577 4.3 5.0 1.0 CE3 B:TRP666 4.4 8.6 1.0 SG A:CYS577 4.4 5.0 1.0 SG B:CYS558 4.5 6.2 1.0 CZ3 B:TRP666 4.5 8.6 1.0 SG B:CYS567 4.6 7.4 1.0 CG2 B:ILE701 4.9 6.6 1.0 CG1 B:ILE701 4.9 6.6 1.0

Iron binding site 3 out of 12 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:7.7 occ:1.00 FE3 A:SF4853 0.0 7.7 1.0 SG A:CYS577 2.1 5.0 1.0 S2 A:SF4853 2.2 7.7 1.0 S4 A:SF4853 2.2 7.7 1.0 S1 A:SF4853 2.2 7.7 1.0 FE4 A:SF4853 2.7 7.7 1.0 FE2 A:SF4853 2.7 7.7 1.0 FE1 A:SF4853 2.7 7.7 1.0 CB A:CYS577 3.0 5.0 1.0 S3 A:SF4853 3.8 7.7 1.0 CD1 A:ILE723 4.4 7.0 1.0 CA A:CYS577 4.4 5.0 1.0 SG A:CYS586 4.5 7.2 1.0 SG B:CYS567 4.5 7.4 1.0 N B:PRO561 4.5 6.5 1.0 CB B:PRO561 4.6 6.5 1.0 SG B:CYS558 4.6 6.2 1.0 CD B:PRO561 4.7 6.5 1.0 N A:GLY579 4.7 6.1 1.0 C B:GLY560 4.7 5.5 1.0 CA B:PRO561 4.8 6.5 1.0 N A:CYS577 4.8 5.0 1.0 CA A:GLY579 4.9 6.1 1.0 C A:GLY579 4.9 6.1 1.0 CA A:CYS586 4.9 7.2 1.0 O A:GLY579 5.0 6.1 1.0 C A:PRO576 5.0 3.9 1.0 O A:PRO576 5.0 3.9 1.0

Iron binding site 4 out of 12 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:7.7 occ:1.00 FE4 A:SF4853 0.0 7.7 1.0 SG B:CYS558 2.1 6.2 1.0 S1 A:SF4853 2.2 7.7 1.0 S3 A:SF4853 2.2 7.7 1.0 S2 A:SF4853 2.2 7.7 1.0 FE2 A:SF4853 2.7 7.7 1.0 FE3 A:SF4853 2.7 7.7 1.0 FE1 A:SF4853 2.7 7.7 1.0 CB B:CYS558 3.1 6.2 1.0 S4 A:SF4853 3.8 7.7 1.0 CA B:GLY560 4.4 5.5 1.0 SG A:CYS586 4.4 7.2 1.0 N B:GLY560 4.4 5.5 1.0 CA B:CYS558 4.5 6.2 1.0 SG A:CYS577 4.6 5.0 1.0 SG B:CYS567 4.6 7.4 1.0 CB A:PRO580 4.6 6.4 1.0 C B:GLY560 4.7 5.5 1.0 N A:PRO580 4.7 6.4 1.0 CD1 B:ILE701 4.7 6.6 1.0 CD A:PRO580 4.8 6.4 1.0 CA A:PRO580 4.8 6.4 1.0 C A:GLY579 4.9 6.1 1.0 O B:GLY560 4.9 5.5 1.0 N B:CYS558 4.9 6.2 1.0 CA B:CYS567 5.0 7.4 1.0

Iron binding site 5 out of 12 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:12.0 occ:1.00 FE1 C:SF4101 0.0 12.0 1.0 SG C:CYS51 2.1 7.7 1.0 S2 C:SF4101 2.2 12.0 1.0 S3 C:SF4101 2.2 12.0 1.0 S4 C:SF4101 2.3 12.0 1.0 FE4 C:SF4101 2.7 12.0 1.0 FE3 C:SF4101 2.7 12.0 1.0 FE2 C:SF4101 2.7 12.0 1.0 N C:CYS51 3.5 7.7 1.0 CB C:CYS51 3.6 7.7 1.0 N C:LYS52 3.6 8.5 1.0 S1 C:SF4101 3.8 12.0 1.0 CA C:CYS51 3.9 7.7 1.0 CD C:PRO22 4.0 12.8 1.0 N C:ARG53 4.1 9.8 1.0 C C:CYS51 4.1 7.7 1.0 CG1 C:ILE49 4.3 11.7 1.0 N C:GLY50 4.4 9.7 1.0 C C:GLY50 4.4 9.7 1.0 CA C:LYS52 4.4 8.5 1.0 CG C:PRO22 4.4 12.8 1.0 SG C:CYS48 4.5 13.0 1.0 SG C:CYS54 4.6 9.7 1.0 SG C:CYS21 4.6 12.2 1.0 CA C:GLY50 4.7 9.7 1.0 C C:LYS52 4.8 8.5 1.0 CB C:ARG53 4.8 9.8 1.0 N C:CYS54 4.9 9.7 1.0 CD1 C:ILE49 4.9 11.7 1.0 N C:ILE49 5.0 11.7 1.0 CA C:ARG53 5.0 9.8 1.0

Iron binding site 6 out of 12 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:12.0 occ:1.00 FE2 C:SF4101 0.0 12.0 1.0 SG C:CYS21 2.1 12.2 1.0 S1 C:SF4101 2.2 12.0 1.0 S4 C:SF4101 2.2 12.0 1.0 S3 C:SF4101 2.3 12.0 1.0 FE3 C:SF4101 2.7 12.0 1.0 FE4 C:SF4101 2.7 12.0 1.0 FE1 C:SF4101 2.7 12.0 1.0 CB C:CYS21 3.3 12.2 1.0 S2 C:SF4101 3.8 12.0 1.0 CA C:CYS21 3.8 12.2 1.0 CD C:PRO22 4.0 12.8 1.0 CB C:VAL25 4.1 15.1 1.0 CG2 C:VAL25 4.1 15.1 1.0 N C:PRO22 4.4 12.8 1.0 C C:CYS21 4.5 12.2 1.0 SG C:CYS51 4.5 7.7 1.0 SG C:CYS54 4.5 9.7 1.0 SG C:CYS48 4.7 13.0 1.0 CD1 C:LEU26 4.7 14.7 1.0 CG C:LEU26 4.8 14.7 1.0 N C:CYS23 4.8 14.8 1.0 CG1 C:VAL25 4.9 15.1 1.0 N C:VAL25 4.9 15.1 1.0 CB C:CYS54 4.9 9.7 1.0 CG C:PRO22 4.9 12.8 1.0

Iron binding site 7 out of 12 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:12.0 occ:1.00 FE3 C:SF4101 0.0 12.0 1.0 SG C:CYS54 2.1 9.7 1.0 S4 C:SF4101 2.2 12.0 1.0 S1 C:SF4101 2.2 12.0 1.0 S2 C:SF4101 2.3 12.0 1.0 FE2 C:SF4101 2.7 12.0 1.0 FE1 C:SF4101 2.7 12.0 1.0 FE4 C:SF4101 2.7 12.0 1.0 CB C:CYS54 3.3 9.7 1.0 S3 C:SF4101 3.8 12.0 1.0 N C:CYS54 3.8 9.7 1.0 CG2 C:VAL67 3.9 10.8 1.0 CA C:CYS54 4.2 9.7 1.0 N C:LYS52 4.4 8.5 1.0 CA C:LYS52 4.4 8.5 1.0 N C:ARG53 4.4 9.8 1.0 SG C:CYS51 4.5 7.7 1.0 SG C:CYS48 4.5 13.0 1.0 SG C:CYS21 4.6 12.2 1.0 C C:LYS52 4.7 8.5 1.0 CD1 C:LEU26 4.8 14.7 1.0 C C:ARG53 5.0 9.8 1.0

Iron binding site 8 out of 12 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:12.0 occ:1.00 FE4 C:SF4101 0.0 12.0 1.0 SG C:CYS48 2.1 13.0 1.0 S3 C:SF4101 2.2 12.0 1.0 S2 C:SF4101 2.2 12.0 1.0 S1 C:SF4101 2.3 12.0 1.0 FE1 C:SF4101 2.7 12.0 1.0 FE2 C:SF4101 2.7 12.0 1.0 FE3 C:SF4101 2.7 12.0 1.0 CB C:CYS48 3.3 13.0 1.0 CA C:CYS48 3.8 13.0 1.0 S4 C:SF4101 3.8 12.0 1.0 N C:GLY50 4.0 9.7 1.0 N C:ILE49 4.1 11.7 1.0 C C:CYS48 4.3 13.0 1.0 CG2 C:VAL25 4.4 15.1 1.0 CA C:GLY50 4.5 9.7 1.0 CG2 C:VAL5 4.6 11.5 1.0 SG C:CYS21 4.6 12.2 1.0 CB C:VAL25 4.7 15.1 1.0 SG C:CYS54 4.7 9.7 1.0 SG C:CYS51 4.7 7.7 1.0 N C:CYS51 4.7 7.7 1.0 CG2 C:VAL67 4.8 10.8 1.0 CG1 C:VAL25 4.8 15.1 1.0 C C:GLY50 5.0 9.7 1.0 CG1 C:VAL67 5.0 10.8 1.0

Iron binding site 9 out of 12 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:16.2 occ:1.00 FE1 C:SF4102 0.0 16.2 1.0 SG C:CYS58 2.2 10.8 1.0 S3 C:SF4102 2.2 16.2 1.0 S2 C:SF4102 2.2 16.2 1.0 S4 C:SF4102 2.3 16.2 1.0 FE4 C:SF4102 2.7 16.2 1.0 FE2 C:SF4102 2.7 16.2 1.0 FE3 C:SF4102 2.7 16.2 1.0 CB C:CYS58 3.3 10.8 1.0 CA C:CYS58 3.8 10.8 1.0 S1 C:SF4102 3.8 16.2 1.0 CB C:SER64 4.0 13.1 1.0 CD C:PRO59 4.0 11.9 1.0 CG1 C:VAL65 4.2 11.4 1.0 SG C:CYS14 4.4 13.9 1.0 OG C:SER64 4.4 13.1 1.0 N C:VAL65 4.5 11.4 1.0 SG C:CYS17 4.6 12.6 1.0 N C:PRO59 4.7 11.9 1.0 SG C:CYS11 4.7 13.9 1.0 C C:CYS58 4.7 10.8 1.0 N C:SER64 4.7 13.1 1.0 CB C:CYS17 4.8 12.6 1.0 CA C:SER64 4.8 13.1 1.0 N C:CYS58 4.9 10.8 1.0 CB C:VAL65 4.9 11.4 1.0 CG2 C:THR60 4.9 13.5 1.0 OG1 C:THR60 5.0 13.5 1.0

Iron binding site 10 out of 12 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:16.2 occ:1.00 FE2 C:SF4102 0.0 16.2 1.0 SG C:CYS17 2.1 12.6 1.0 S4 C:SF4102 2.2 16.2 1.0 S1 C:SF4102 2.2 16.2 1.0 S3 C:SF4102 2.3 16.2 1.0 FE3 C:SF4102 2.7 16.2 1.0 FE4 C:SF4102 2.7 16.2 1.0 FE1 C:SF4102 2.7 16.2 1.0 CB C:CYS17 3.1 12.6 1.0 CB C:ALA40 3.8 15.2 1.0 N C:CYS17 3.8 12.6 1.0 S2 C:SF4102 3.8 16.2 1.0 CA C:CYS17 4.1 12.6 1.0 SG C:CYS11 4.4 13.9 1.0 SG C:CYS14 4.6 13.9 1.0 N C:GLN16 4.6 12.9 1.0 CG1 C:VAL65 4.6 11.4 1.0 SG C:CYS58 4.7 10.8 1.0 N C:THR15 4.8 14.2 1.0 N C:VAL18 4.9 13.9 1.0 C C:THR15 5.0 14.2 1.0 C C:CYS17 5.0 12.6 1.0 C C:GLN16 5.0 12.9 1.0

S.Zhang, L.Si, X.Su, X.Zhao, X.An, M.Li. Growth Phase-Dependent Reorganization of Cryptophyte Photosystem I Antennae. Commun Biol V. 7 560 2024.
ISSN: ESSN 2399-3642
PubMed: 38734819
DOI: 10.1038/S42003-024-06268-5