Iron in PDB 8wmj: Structure of Psi-11CAC Complex at Logrithmic Growth Phase

Other elements in 8wmj:

The structure of Structure of Psi-11CAC Complex at Logrithmic Growth Phase also contains other interesting chemical elements:

Magnesium (Mg) 234 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Structure of Psi-11CAC Complex at Logrithmic Growth Phase (pdb code 8wmj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Structure of Psi-11CAC Complex at Logrithmic Growth Phase, PDB code: 8wmj:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 8wmj

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Iron binding site 1 out of 12 in the Structure of Psi-11CAC Complex at Logrithmic Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Psi-11CAC Complex at Logrithmic Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe802

b:3.9
occ:1.00
 FE1 B:SF4802 0.0 3.9 1.0
SG B:CYS567 1.7 3.8 1.0
S4 B:SF4802 2.1 3.9 1.0
S2 B:SF4802 2.1 3.9 1.0
S3 B:SF4802 2.1 3.9 1.0
FE4 B:SF4802 3.0 3.9 1.0
FE2 B:SF4802 3.0 3.9 1.0
FE3 B:SF4802 3.0 3.9 1.0
CB B:CYS567 3.0 3.8 1.0
CA B:CYS567 3.5 3.8 1.0
S1 B:SF4802 3.7 3.9 1.0
N B:CYS567 3.8 3.8 1.0
CD1 A:ILE723 3.9 3.6 1.0
CZ3 B:TRP666 4.1 4.5 1.0
CG2 A:ILE723 4.4 3.6 1.0
SG B:CYS558 4.6 3.8 1.0
SG A:CYS586 4.6 3.5 1.0
CB B:CYS558 4.6 3.8 1.0
CG1 A:ILE723 4.7 3.6 1.0
C B:THR566 4.7 4.0 1.0
SG A:CYS577 4.8 4.0 1.0
NH2 A:ARG727 4.8 3.5 1.0
CE3 B:TRP666 4.8 4.5 1.0
CH2 B:TRP666 4.9 4.5 1.0
O A:HOH940 5.0 7.9 1.0
C B:CYS567 5.0 3.8 1.0

Iron binding site 2 out of 12 in 8wmj

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Iron binding site 2 out of 12 in the Structure of Psi-11CAC Complex at Logrithmic Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Psi-11CAC Complex at Logrithmic Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe802

b:3.9
occ:1.00
 FE2 B:SF4802 0.0 3.9 1.0
SG A:CYS586 1.7 3.5 1.0
S3 B:SF4802 2.1 3.9 1.0
S4 B:SF4802 2.1 3.9 1.0
S1 B:SF4802 2.1 3.9 1.0
CB A:CYS586 2.9 3.5 1.0
FE3 B:SF4802 3.0 3.9 1.0
FE4 B:SF4802 3.0 3.9 1.0
FE1 B:SF4802 3.0 3.9 1.0
CA A:CYS586 3.5 3.5 1.0
S2 B:SF4802 3.7 3.9 1.0
N A:CYS586 4.0 3.5 1.0
CD1 B:ILE701 4.1 4.2 1.0
CE3 B:TRP666 4.2 4.5 1.0
CZ3 B:TRP666 4.4 4.5 1.0
CB A:CYS577 4.4 4.0 1.0
SG B:CYS567 4.5 3.8 1.0
SG A:CYS577 4.5 4.0 1.0
SG B:CYS558 4.6 3.8 1.0
CG2 B:ILE701 4.7 4.2 1.0
O B:HOH923 4.7 9.6 1.0
CG1 B:ILE701 4.7 4.2 1.0
NH2 A:ARG727 4.9 3.5 1.0
C A:CYS586 4.9 3.5 1.0

Iron binding site 3 out of 12 in 8wmj

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Iron binding site 3 out of 12 in the Structure of Psi-11CAC Complex at Logrithmic Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Psi-11CAC Complex at Logrithmic Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe802

b:3.9
occ:1.00
 FE3 B:SF4802 0.0 3.9 1.0
SG A:CYS577 1.9 4.0 1.0
S1 B:SF4802 2.1 3.9 1.0
S4 B:SF4802 2.1 3.9 1.0
S2 B:SF4802 2.1 3.9 1.0
CB A:CYS577 2.9 4.0 1.0
FE2 B:SF4802 3.0 3.9 1.0
FE1 B:SF4802 3.0 3.9 1.0
FE4 B:SF4802 3.0 3.9 1.0
S3 B:SF4802 3.7 3.9 1.0
CA A:CYS577 4.3 4.0 1.0
CD1 A:ILE723 4.3 3.6 1.0
N A:GLY579 4.5 4.4 1.0
N B:PRO561 4.5 5.6 1.0
SG A:CYS586 4.5 3.5 1.0
SG B:CYS567 4.5 3.8 1.0
CB B:PRO561 4.6 5.6 1.0
SG B:CYS558 4.6 3.8 1.0
N A:CYS577 4.6 4.0 1.0
CA A:GLY579 4.6 4.4 1.0
CD B:PRO561 4.7 5.6 1.0
C B:GLY560 4.7 5.0 1.0
CA B:PRO561 4.7 5.6 1.0
C A:GLY579 4.8 4.4 1.0
O A:GLY579 4.8 4.4 1.0
CA A:CYS586 4.8 3.5 1.0
C A:CYS577 4.9 4.0 1.0
C A:PRO576 4.9 3.8 1.0
CG B:PRO561 5.0 5.6 1.0

Iron binding site 4 out of 12 in 8wmj

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Iron binding site 4 out of 12 in the Structure of Psi-11CAC Complex at Logrithmic Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Psi-11CAC Complex at Logrithmic Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe802

b:3.9
occ:1.00
 FE4 B:SF4802 0.0 3.9 1.0
SG B:CYS558 1.8 3.8 1.0
S1 B:SF4802 2.1 3.9 1.0
S3 B:SF4802 2.1 3.9 1.0
S2 B:SF4802 2.1 3.9 1.0
CB B:CYS558 2.8 3.8 1.0
FE1 B:SF4802 3.0 3.9 1.0
FE2 B:SF4802 3.0 3.9 1.0
FE3 B:SF4802 3.0 3.9 1.0
S4 B:SF4802 3.7 3.9 1.0
CA B:CYS558 4.2 3.8 1.0
N B:GLY560 4.3 5.0 1.0
CA B:GLY560 4.4 5.0 1.0
SG A:CYS586 4.5 3.5 1.0
CB A:PRO580 4.5 4.4 1.0
SG B:CYS567 4.5 3.8 1.0
N A:PRO580 4.5 4.4 1.0
N B:CYS558 4.6 3.8 1.0
CD A:PRO580 4.6 4.4 1.0
CD1 B:ILE701 4.6 4.2 1.0
C B:GLY560 4.7 5.0 1.0
CA A:PRO580 4.7 4.4 1.0
SG A:CYS577 4.8 4.0 1.0
C B:CYS558 4.8 3.8 1.0
C A:GLY579 4.8 4.4 1.0
CA B:CYS567 4.9 3.8 1.0
O B:GLY560 4.9 5.0 1.0
CG A:PRO580 4.9 4.4 1.0
C B:PRO557 4.9 3.6 1.0
O B:PRO557 5.0 3.6 1.0

Iron binding site 5 out of 12 in 8wmj

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Iron binding site 5 out of 12 in the Structure of Psi-11CAC Complex at Logrithmic Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Psi-11CAC Complex at Logrithmic Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:10.5
occ:1.00
 FE1 C:SF4101 0.0 10.5 1.0
SG C:CYS51 1.9 6.1 1.0
S2 C:SF4101 2.1 10.5 1.0
S4 C:SF4101 2.1 10.5 1.0
S3 C:SF4101 2.1 10.5 1.0
FE2 C:SF4101 3.0 10.5 1.0
FE4 C:SF4101 3.0 10.5 1.0
FE3 C:SF4101 3.0 10.5 1.0
CB C:CYS51 3.4 6.1 1.0
N C:CYS51 3.5 6.1 1.0
N C:LYS52 3.6 6.3 1.0
S1 C:SF4101 3.7 10.5 1.0
CA C:CYS51 3.8 6.1 1.0
CD C:PRO22 3.9 11.4 1.0
C C:CYS51 4.1 6.1 1.0
N C:ARG53 4.1 8.0 1.0
CG1 C:ILE49 4.3 7.2 1.0
CG C:PRO22 4.3 11.4 1.0
C C:GLY50 4.4 5.7 1.0
N C:GLY50 4.4 5.7 1.0
CA C:LYS52 4.5 6.3 1.0
SG C:CYS54 4.6 8.0 1.0
CB C:ARG53 4.7 8.0 1.0
CD1 C:ILE49 4.8 7.2 1.0
SG C:CYS48 4.8 8.8 1.0
CA C:GLY50 4.8 5.7 1.0
SG C:CYS21 4.8 12.0 1.0
C C:LYS52 4.8 6.3 1.0
N C:CYS54 4.9 8.0 1.0
N C:ILE49 5.0 7.2 1.0
CA C:ARG53 5.0 8.0 1.0

Iron binding site 6 out of 12 in 8wmj

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Iron binding site 6 out of 12 in the Structure of Psi-11CAC Complex at Logrithmic Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Psi-11CAC Complex at Logrithmic Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:10.5
occ:1.00
 FE2 C:SF4101 0.0 10.5 1.0
SG C:CYS21 2.1 12.0 1.0
S4 C:SF4101 2.1 10.5 1.0
S3 C:SF4101 2.1 10.5 1.0
S1 C:SF4101 2.1 10.5 1.0
FE4 C:SF4101 3.0 10.5 1.0
FE1 C:SF4101 3.0 10.5 1.0
FE3 C:SF4101 3.0 10.5 1.0
CB C:CYS21 3.2 12.0 1.0
CA C:CYS21 3.5 12.0 1.0
S2 C:SF4101 3.7 10.5 1.0
CB C:VAL25 3.9 12.3 1.0
CG2 C:VAL25 4.0 12.3 1.0
CD C:PRO22 4.0 11.4 1.0
C C:CYS21 4.3 12.0 1.0
N C:PRO22 4.4 11.4 1.0
CD1 C:LEU26 4.6 12.0 1.0
SG C:CYS54 4.6 8.0 1.0
SG C:CYS51 4.7 6.1 1.0
N C:CYS21 4.7 12.0 1.0
N C:CYS23 4.7 12.4 1.0
CG C:LEU26 4.7 12.0 1.0
N C:VAL25 4.7 12.3 1.0
CG1 C:VAL25 4.7 12.3 1.0
CA C:VAL25 4.9 12.3 1.0
CB C:CYS54 4.9 8.0 1.0
SG C:CYS48 5.0 8.8 1.0

Iron binding site 7 out of 12 in 8wmj

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Iron binding site 7 out of 12 in the Structure of Psi-11CAC Complex at Logrithmic Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Psi-11CAC Complex at Logrithmic Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:10.5
occ:1.00
 FE3 C:SF4101 0.0 10.5 1.0
SG C:CYS54 1.9 8.0 1.0
S1 C:SF4101 2.1 10.5 1.0
S2 C:SF4101 2.1 10.5 1.0
S4 C:SF4101 2.1 10.5 1.0
FE4 C:SF4101 3.0 10.5 1.0
FE1 C:SF4101 3.0 10.5 1.0
FE2 C:SF4101 3.0 10.5 1.0
CB C:CYS54 3.1 8.0 1.0
S3 C:SF4101 3.7 10.5 1.0
CG2 C:VAL67 3.7 6.3 1.0
N C:CYS54 3.8 8.0 1.0
CA C:CYS54 4.1 8.0 1.0
CA C:LYS52 4.3 6.3 1.0
N C:LYS52 4.3 6.3 1.0
N C:ARG53 4.4 8.0 1.0
SG C:CYS51 4.5 6.1 1.0
CD1 C:LEU26 4.6 12.0 1.0
C C:LYS52 4.7 6.3 1.0
SG C:CYS48 4.7 8.8 1.0
SG C:CYS21 4.9 12.0 1.0
C C:ARG53 4.9 8.0 1.0
N C:GLU55 5.0 7.4 1.0

Iron binding site 8 out of 12 in 8wmj

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Iron binding site 8 out of 12 in the Structure of Psi-11CAC Complex at Logrithmic Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Psi-11CAC Complex at Logrithmic Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:10.5
occ:1.00
 FE4 C:SF4101 0.0 10.5 1.0
SG C:CYS48 2.1 8.8 1.0
S2 C:SF4101 2.1 10.5 1.0
S1 C:SF4101 2.1 10.5 1.0
S3 C:SF4101 2.1 10.5 1.0
FE2 C:SF4101 3.0 10.5 1.0
FE1 C:SF4101 3.0 10.5 1.0
FE3 C:SF4101 3.0 10.5 1.0
CB C:CYS48 3.2 8.8 1.0
CA C:CYS48 3.6 8.8 1.0
S4 C:SF4101 3.7 10.5 1.0
N C:GLY50 4.0 5.7 1.0
N C:ILE49 4.0 7.2 1.0
C C:CYS48 4.2 8.8 1.0
CG2 C:VAL25 4.3 12.3 1.0
CA C:GLY50 4.4 5.7 1.0
CG2 C:VAL5 4.5 8.8 1.0
CB C:VAL25 4.5 12.3 1.0
CG1 C:VAL25 4.6 12.3 1.0
CG2 C:VAL67 4.6 6.3 1.0
N C:CYS51 4.7 6.1 1.0
SG C:CYS21 4.8 12.0 1.0
SG C:CYS54 4.8 8.0 1.0
SG C:CYS51 4.8 6.1 1.0
N C:CYS48 4.9 8.8 1.0
CG1 C:VAL67 4.9 6.3 1.0
C C:GLY50 5.0 5.7 1.0

Iron binding site 9 out of 12 in 8wmj

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Iron binding site 9 out of 12 in the Structure of Psi-11CAC Complex at Logrithmic Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of Psi-11CAC Complex at Logrithmic Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:15.1
occ:1.00
 FE1 C:SF4102 0.0 15.1 1.0
SG C:CYS58 2.0 10.1 1.0
S3 C:SF4102 2.1 15.1 1.0
S4 C:SF4102 2.1 15.1 1.0
S2 C:SF4102 2.1 15.1 1.0
FE3 C:SF4102 3.0 15.1 1.0
FE4 C:SF4102 3.0 15.1 1.0
FE2 C:SF4102 3.0 15.1 1.0
CB C:CYS58 3.3 10.1 1.0
CA C:CYS58 3.7 10.1 1.0
S1 C:SF4102 3.7 15.1 1.0
CD C:PRO59 4.0 11.7 1.0
CB C:SER64 4.1 8.4 1.0
OG C:SER64 4.2 8.4 1.0
CG1 C:VAL65 4.3 7.4 1.0
N C:VAL65 4.4 7.4 1.0
N C:SER64 4.5 8.4 1.0
SG C:CYS14 4.5 13.2 1.0
C C:CYS58 4.5 10.1 1.0
OG1 C:THR60 4.6 11.2 1.0
N C:PRO59 4.6 11.7 1.0
SG C:CYS17 4.7 12.3 1.0
CB C:CYS17 4.8 12.3 1.0
CG2 C:THR60 4.8 11.2 1.0
N C:CYS58 4.8 10.1 1.0
SG C:CYS11 4.8 12.4 1.0
CA C:SER64 4.8 8.4 1.0
CB C:VAL65 4.9 7.4 1.0

Iron binding site 10 out of 12 in 8wmj

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Iron binding site 10 out of 12 in the Structure of Psi-11CAC Complex at Logrithmic Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of Psi-11CAC Complex at Logrithmic Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:15.1
occ:1.00
 FE2 C:SF4102 0.0 15.1 1.0
SG C:CYS17 1.9 12.3 1.0
S4 C:SF4102 2.1 15.1 1.0
S1 C:SF4102 2.1 15.1 1.0
S3 C:SF4102 2.1 15.1 1.0
CB C:CYS17 2.8 12.3 1.0
FE4 C:SF4102 3.0 15.1 1.0
FE1 C:SF4102 3.0 15.1 1.0
FE3 C:SF4102 3.0 15.1 1.0
N C:CYS17 3.6 12.3 1.0
S2 C:SF4102 3.7 15.1 1.0
CA C:CYS17 3.8 12.3 1.0
CB C:ALA40 4.0 11.6 1.0
SG C:CYS14 4.5 13.2 1.0
SG C:CYS11 4.6 12.4 1.0
CG1 C:VAL65 4.6 7.4 1.0
N C:GLN16 4.6 11.7 1.0
N C:VAL18 4.7 12.1 1.0
CE C:MET28 4.7 17.1 1.0
C C:CYS17 4.7 12.3 1.0
SG C:CYS58 4.8 10.1 1.0
C C:GLN16 4.8 11.7 1.0
CB C:VAL65 4.9 7.4 1.0
C C:THR15 5.0 12.1 1.0
N C:THR15 5.0 12.1 1.0

Reference:

S.Zhang, L.Si, X.Su, X.Zhao, X.An, M.Li. Growth Phase-Dependent Reorganization of Cryptophyte Photosystem I Antennae. Commun Biol V. 7 560 2024.
ISSN: ESSN 2399-3642
PubMed: 38734819
DOI: 10.1038/S42003-024-06268-5
Page generated: Sat Aug 10 19:27:37 2024

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