Iron in PDB 8wmw: The Structure of Psi-11CAC at the Stationary Growth Phase

All present enzymatic activity of The Structure of Psi-11CAC at the Stationary Growth Phase:
1.97.1.12;

The structure of The Structure of Psi-11CAC at the Stationary Growth Phase also contains other interesting chemical elements:

Magnesium

(Mg)

232 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the The Structure of Psi-11CAC at the Stationary Growth Phase (pdb code 8wmw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the The Structure of Psi-11CAC at the Stationary Growth Phase, PDB code: 8wmw:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe854 b:17.5 occ:1.00 FE1 A:SF4854 0.0 17.5 1.0 SG B:CYS567 1.8 12.7 1.0 S4 A:SF4854 2.1 17.5 1.0 S2 A:SF4854 2.1 17.5 1.0 S3 A:SF4854 2.1 17.5 1.0 FE4 A:SF4854 3.0 17.5 1.0 FE3 A:SF4854 3.0 17.5 1.0 FE2 A:SF4854 3.0 17.5 1.0 CB B:CYS567 3.1 12.7 1.0 CA B:CYS567 3.7 12.7 1.0 S1 A:SF4854 3.7 17.5 1.0 N B:CYS567 3.8 12.7 1.0 CD1 A:ILE723 4.2 12.4 1.0 CZ3 B:TRP666 4.2 12.7 1.0 SG A:CYS586 4.7 12.7 1.0 SG B:CYS558 4.7 13.0 1.0 CB B:CYS558 4.7 13.0 1.0 C B:THR566 4.7 13.0 1.0 CG2 A:ILE723 4.8 12.4 1.0 SG A:CYS577 4.8 12.9 1.0 CE3 B:TRP666 4.9 12.7 1.0 CG1 A:ILE723 5.0 12.4 1.0 N B:THR566 5.0 13.0 1.0

Iron binding site 2 out of 12 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe854 b:17.5 occ:1.00 FE2 A:SF4854 0.0 17.5 1.0 SG A:CYS586 1.8 12.7 1.0 S1 A:SF4854 2.1 17.5 1.0 S3 A:SF4854 2.1 17.5 1.0 S4 A:SF4854 2.1 17.5 1.0 FE3 A:SF4854 3.0 17.5 1.0 FE4 A:SF4854 3.0 17.5 1.0 FE1 A:SF4854 3.0 17.5 1.0 CB A:CYS586 3.2 12.7 1.0 S2 A:SF4854 3.7 17.5 1.0 CA A:CYS586 3.8 12.7 1.0 N A:CYS586 4.2 12.7 1.0 CD1 B:ILE701 4.3 12.9 1.0 CE3 B:TRP666 4.3 12.7 1.0 CB A:CYS577 4.4 12.9 1.0 SG A:CYS577 4.5 12.9 1.0 CZ3 B:TRP666 4.5 12.7 1.0 SG B:CYS567 4.7 12.7 1.0 SG B:CYS558 4.7 13.0 1.0 CG1 B:ILE701 5.0 12.9 1.0

Iron binding site 3 out of 12 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe854 b:17.5 occ:1.00 FE3 A:SF4854 0.0 17.5 1.0 SG A:CYS577 1.9 12.9 1.0 S2 A:SF4854 2.1 17.5 1.0 S1 A:SF4854 2.1 17.5 1.0 S4 A:SF4854 2.1 17.5 1.0 CB A:CYS577 3.0 12.9 1.0 FE2 A:SF4854 3.0 17.5 1.0 FE1 A:SF4854 3.0 17.5 1.0 FE4 A:SF4854 3.0 17.5 1.0 S3 A:SF4854 3.7 17.5 1.0 CA A:CYS577 4.4 12.9 1.0 CB B:PRO561 4.4 16.2 1.0 N B:PRO561 4.5 16.2 1.0 CD1 A:ILE723 4.5 12.4 1.0 N A:GLY579 4.6 13.4 1.0 SG A:CYS586 4.6 12.7 1.0 CD B:PRO561 4.6 16.2 1.0 SG B:CYS567 4.6 12.7 1.0 CA B:PRO561 4.7 16.2 1.0 C B:GLY560 4.7 15.2 1.0 CA A:GLY579 4.8 13.4 1.0 N A:CYS577 4.8 12.9 1.0 SG B:CYS558 4.8 13.0 1.0 CG B:PRO561 4.9 16.2 1.0 C A:GLY579 4.9 13.4 1.0

Iron binding site 4 out of 12 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe854 b:17.5 occ:1.00 FE4 A:SF4854 0.0 17.5 1.0 SG B:CYS558 1.9 13.0 1.0 S1 A:SF4854 2.1 17.5 1.0 S2 A:SF4854 2.1 17.5 1.0 S3 A:SF4854 2.1 17.5 1.0 CB B:CYS558 2.9 13.0 1.0 FE1 A:SF4854 3.0 17.5 1.0 FE2 A:SF4854 3.0 17.5 1.0 FE3 A:SF4854 3.0 17.5 1.0 S4 A:SF4854 3.7 17.5 1.0 N B:GLY560 4.3 15.2 1.0 CA B:GLY560 4.4 15.2 1.0 CA B:CYS558 4.4 13.0 1.0 CB A:PRO580 4.5 13.5 1.0 C B:GLY560 4.6 15.2 1.0 SG B:CYS567 4.6 12.7 1.0 SG A:CYS586 4.7 12.7 1.0 N A:PRO580 4.7 13.5 1.0 CD A:PRO580 4.7 13.5 1.0 O B:GLY560 4.8 15.2 1.0 SG A:CYS577 4.8 12.9 1.0 N B:CYS558 4.8 13.0 1.0 CA A:PRO580 4.8 13.5 1.0 CD1 B:ILE701 4.8 12.9 1.0 CG A:PRO580 4.9 13.5 1.0 C B:CYS558 4.9 13.0 1.0 C A:GLY579 5.0 13.4 1.0

Iron binding site 5 out of 12 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:24.8 occ:1.00 FE1 C:SF4101 0.0 24.8 1.0 SG C:CYS51 2.0 17.9 1.0 S2 C:SF4101 2.1 24.8 1.0 S3 C:SF4101 2.1 24.8 1.0 S4 C:SF4101 2.1 24.8 1.0 FE2 C:SF4101 3.0 24.8 1.0 FE4 C:SF4101 3.0 24.8 1.0 FE3 C:SF4101 3.0 24.8 1.0 CB C:CYS51 3.4 17.9 1.0 N C:CYS51 3.4 17.9 1.0 N C:LYS52 3.5 17.4 1.0 S1 C:SF4101 3.7 24.8 1.0 CA C:CYS51 3.7 17.9 1.0 C C:CYS51 4.0 17.9 1.0 CD C:PRO22 4.0 19.1 1.0 N C:ARG53 4.1 17.8 1.0 C C:GLY50 4.3 17.9 1.0 CG1 C:ILE49 4.3 18.5 1.0 N C:GLY50 4.4 17.9 1.0 CA C:LYS52 4.4 17.4 1.0 CG C:PRO22 4.5 19.1 1.0 SG C:CYS21 4.6 22.2 1.0 SG C:CYS54 4.6 18.4 1.0 SG C:CYS48 4.6 21.4 1.0 CA C:GLY50 4.7 17.9 1.0 C C:LYS52 4.8 17.4 1.0 CB C:ARG53 4.8 17.8 1.0 N C:CYS54 4.9 18.4 1.0 CD1 C:ILE49 5.0 18.5 1.0 N C:ILE49 5.0 18.5 1.0

Iron binding site 6 out of 12 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:24.8 occ:1.00 FE2 C:SF4101 0.0 24.8 1.0 SG C:CYS21 1.8 22.2 1.0 S4 C:SF4101 2.1 24.8 1.0 S1 C:SF4101 2.1 24.8 1.0 S3 C:SF4101 2.1 24.8 1.0 FE1 C:SF4101 3.0 24.8 1.0 FE4 C:SF4101 3.0 24.8 1.0 FE3 C:SF4101 3.0 24.8 1.0 CB C:CYS21 3.1 22.2 1.0 S2 C:SF4101 3.7 24.8 1.0 CA C:CYS21 3.7 22.2 1.0 CB C:VAL25 4.0 23.1 1.0 CG2 C:VAL25 4.1 23.1 1.0 CD C:PRO22 4.1 19.1 1.0 C C:CYS21 4.4 22.2 1.0 N C:PRO22 4.4 19.1 1.0 SG C:CYS51 4.6 17.9 1.0 SG C:CYS54 4.7 18.4 1.0 N C:CYS23 4.7 22.6 1.0 SG C:CYS48 4.8 21.4 1.0 N C:VAL25 4.8 23.1 1.0 CD1 C:LEU26 4.8 22.9 1.0 CG C:LEU26 4.8 22.9 1.0 CG1 C:VAL25 4.8 23.1 1.0 N C:CYS21 5.0 22.2 1.0

Iron binding site 7 out of 12 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:24.8 occ:1.00 FE3 C:SF4101 0.0 24.8 1.0 SG C:CYS54 1.9 18.4 1.0 S1 C:SF4101 2.1 24.8 1.0 S4 C:SF4101 2.1 24.8 1.0 S2 C:SF4101 2.1 24.8 1.0 FE2 C:SF4101 3.0 24.8 1.0 FE4 C:SF4101 3.0 24.8 1.0 FE1 C:SF4101 3.0 24.8 1.0 CB C:CYS54 3.1 18.4 1.0 S3 C:SF4101 3.7 24.8 1.0 CG2 C:VAL67 3.8 16.4 1.0 N C:CYS54 3.8 18.4 1.0 CA C:CYS54 4.1 18.4 1.0 CA C:LYS52 4.4 17.4 1.0 N C:LYS52 4.4 17.4 1.0 N C:ARG53 4.5 17.8 1.0 SG C:CYS48 4.6 21.4 1.0 SG C:CYS51 4.6 17.9 1.0 SG C:CYS21 4.6 22.2 1.0 C C:LYS52 4.7 17.4 1.0 CD1 C:LEU26 4.8 22.9 1.0 C C:ARG53 5.0 17.8 1.0

Iron binding site 8 out of 12 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:24.8 occ:1.00 FE4 C:SF4101 0.0 24.8 1.0 SG C:CYS48 1.9 21.4 1.0 S1 C:SF4101 2.1 24.8 1.0 S2 C:SF4101 2.1 24.8 1.0 S3 C:SF4101 2.1 24.8 1.0 FE1 C:SF4101 3.0 24.8 1.0 FE2 C:SF4101 3.0 24.8 1.0 FE3 C:SF4101 3.0 24.8 1.0 CB C:CYS48 3.2 21.4 1.0 CA C:CYS48 3.6 21.4 1.0 S4 C:SF4101 3.7 24.8 1.0 N C:GLY50 3.9 17.9 1.0 N C:ILE49 4.0 18.5 1.0 C C:CYS48 4.1 21.4 1.0 CA C:GLY50 4.4 17.9 1.0 CG2 C:VAL25 4.4 23.1 1.0 CG2 C:VAL5 4.5 17.0 1.0 SG C:CYS21 4.7 22.2 1.0 CB C:VAL25 4.7 23.1 1.0 CG2 C:VAL67 4.7 16.4 1.0 N C:CYS51 4.8 17.9 1.0 CG1 C:VAL25 4.8 23.1 1.0 SG C:CYS54 4.9 18.4 1.0 SG C:CYS51 4.9 17.9 1.0 C C:ILE49 4.9 18.5 1.0 N C:CYS48 5.0 21.4 1.0 CG1 C:VAL67 5.0 16.4 1.0 C C:GLY50 5.0 17.9 1.0

Iron binding site 9 out of 12 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:25.3 occ:1.00 FE1 C:SF4102 0.0 25.3 1.0 SG C:CYS58 2.1 18.1 1.0 S2 C:SF4102 2.1 25.3 1.0 S4 C:SF4102 2.1 25.3 1.0 S3 C:SF4102 2.1 25.3 1.0 FE3 C:SF4102 3.0 25.3 1.0 FE4 C:SF4102 3.0 25.3 1.0 FE2 C:SF4102 3.0 25.3 1.0 CB C:CYS58 3.3 18.1 1.0 S1 C:SF4102 3.7 25.3 1.0 CA C:CYS58 3.7 18.1 1.0 CD C:PRO59 4.0 16.9 1.0 CB C:SER64 4.0 18.2 1.0 CG1 C:VAL65 4.1 15.7 1.0 N C:VAL65 4.5 15.7 1.0 OG C:SER64 4.5 18.2 1.0 SG C:CYS14 4.5 23.3 1.0 N C:PRO59 4.6 16.9 1.0 C C:CYS58 4.6 18.1 1.0 N C:SER64 4.6 18.2 1.0 SG C:CYS11 4.7 22.1 1.0 OG1 C:THR60 4.8 20.4 1.0 SG C:CYS17 4.8 22.3 1.0 CA C:SER64 4.8 18.2 1.0 CG2 C:THR60 4.8 20.4 1.0 CB C:CYS17 4.9 22.3 1.0 N C:CYS58 4.9 18.1 1.0 CB C:VAL65 4.9 15.7 1.0

Iron binding site 10 out of 12 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:25.3 occ:1.00 FE2 C:SF4102 0.0 25.3 1.0 SG C:CYS17 1.9 22.3 1.0 S1 C:SF4102 2.1 25.3 1.0 S4 C:SF4102 2.1 25.3 1.0 S3 C:SF4102 2.1 25.3 1.0 CB C:CYS17 2.8 22.3 1.0 FE4 C:SF4102 3.0 25.3 1.0 FE3 C:SF4102 3.0 25.3 1.0 FE1 C:SF4102 3.0 25.3 1.0 N C:CYS17 3.6 22.3 1.0 S2 C:SF4102 3.7 25.3 1.0 CA C:CYS17 3.8 22.3 1.0 CB C:ALA40 3.9 25.1 1.0 N C:GLN16 4.4 23.4 1.0 SG C:CYS14 4.5 23.3 1.0 SG C:CYS11 4.6 22.1 1.0 CG1 C:VAL65 4.6 15.7 1.0 N C:VAL18 4.7 22.6 1.0 C C:CYS17 4.7 22.3 1.0 C C:GLN16 4.8 23.4 1.0 N C:THR15 4.8 23.0 1.0 C C:THR15 4.8 23.0 1.0 SG C:CYS58 4.9 18.1 1.0 CA C:THR15 4.9 23.0 1.0

S.Zhang, L.Si, X.Su, X.Zhao, X.An, M.Li. Growth Phase-Dependent Reorganization of Cryptophyte Photosystem I Antennae. Commun Biol V. 7 560 2024.
ISSN: ESSN 2399-3642
PubMed: 38734819
DOI: 10.1038/S42003-024-06268-5