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Iron in PDB 8x3h: Crystal Structure of Iron-Bound Recombinant Ovotransferrin N-Lobe at 0.93 Angstrom Resolution

Protein crystallography data

The structure of Crystal Structure of Iron-Bound Recombinant Ovotransferrin N-Lobe at 0.93 Angstrom Resolution, PDB code: 8x3h was solved by M.Toyoda, B.Mikami, K.Mizutani, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 0.93
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.346, 75.518, 84.647, 90, 90, 90
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Iron-Bound Recombinant Ovotransferrin N-Lobe at 0.93 Angstrom Resolution (pdb code 8x3h). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Iron-Bound Recombinant Ovotransferrin N-Lobe at 0.93 Angstrom Resolution, PDB code: 8x3h:

Iron binding site 1 out of 1 in 8x3h

Go back to Iron Binding Sites List in 8x3h
Iron binding site 1 out of 1 in the Crystal Structure of Iron-Bound Recombinant Ovotransferrin N-Lobe at 0.93 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Iron-Bound Recombinant Ovotransferrin N-Lobe at 0.93 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:3.9
occ:1.00
OH A:TYR92 2.0 5.3 1.0
OH A:TYR191 2.0 5.1 1.0
O3 A:CO3402 2.1 4.9 1.0
OD1 A:ASP60 2.1 5.6 1.0
NE2 A:HIS250 2.2 4.9 1.0
O1 A:CO3402 2.2 5.5 1.0
C A:CO3402 2.5 5.2 1.0
CZ A:TYR92 3.0 5.0 1.0
CZ A:TYR191 3.0 4.8 1.0
CD2 A:HIS250 3.1 4.7 1.0
CG A:ASP60 3.2 5.1 1.0
HD2 A:HIS250 3.2 5.6 1.0
CE1 A:HIS250 3.2 5.0 1.0
HE2 A:TYR92 3.3 6.2 1.0
HE1 A:HIS250 3.4 6.0 1.0
HZ2 A:LYS301 3.4 8.8 1.0
HB2 A:ASP60 3.4 6.1 1.0
CE2 A:TYR92 3.5 5.1 1.0
HE1 A:TYR191 3.6 5.7 1.0
HH21 A:ARG121 3.6 6.7 1.0
CE1 A:TYR191 3.7 4.7 1.0
O2 A:CO3402 3.8 5.5 1.0
CB A:ASP60 3.8 5.1 1.0
H A:ALA123 3.8 6.1 1.0
HA A:ASP60 3.9 6.0 1.0
O A:HOH577 4.0 8.1 1.0
HE A:ARG121 4.0 6.3 1.0
CE2 A:TYR191 4.0 5.2 1.0
CE1 A:TYR92 4.1 5.6 1.0
HE2 A:TYR191 4.1 6.2 1.0
HD2 A:LYS301 4.1 6.2 1.0
H A:SER122 4.1 6.2 1.0
HE1 A:TYR92 4.2 6.7 1.0
OD2 A:ASP60 4.3 6.0 1.0
NZ A:LYS301 4.3 5.8 1.0
CG A:HIS250 4.3 4.5 1.0
ND1 A:HIS250 4.3 5.2 1.0
H A:GLY61 4.4 6.7 1.0
HB3 A:ARG121 4.4 6.1 1.0
HZ3 A:LYS301 4.4 8.8 1.0
CA A:ASP60 4.4 5.0 1.0
CB A:SER122 4.5 6.6 1.0
NH2 A:ARG121 4.5 5.6 1.0
HB3 A:ASP60 4.7 6.1 1.0
N A:ALA123 4.7 5.1 1.0
HZ1 A:LYS301 4.7 8.8 1.0
N A:SER122 4.8 5.2 1.0
NE A:ARG121 4.8 5.2 1.0
CD2 A:TYR92 4.9 5.2 1.0
OG A:SER122 4.9 8.0 1.0
CD A:LYS301 4.9 5.2 1.0
HH22 A:ARG121 5.0 6.7 1.0

Reference:

M.Toyoda, A.Tanabe, B.Mikami, M.Hirose, K.Mizutani. Crystal Structure of Iron-Bound Ovotransferrin N-Lobe at Atomic Resolution To Be Published.
Page generated: Fri Aug 8 00:46:42 2025

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