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Iron in PDB 8x9v: Crystal Structure of Xanthomonas Oryzae Pv. Oryzae Nadh-Quinone Oxidoreductase Subunits Nuoe and Nuof

Protein crystallography data

The structure of Crystal Structure of Xanthomonas Oryzae Pv. Oryzae Nadh-Quinone Oxidoreductase Subunits Nuoe and Nuof, PDB code: 8x9v was solved by L.Li, T.Ran, W.Wang, F.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.84 / 2.36
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 92.2, 99.91, 147.77, 90, 90, 90
R / Rfree (%) 19.2 / 24.8

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Xanthomonas Oryzae Pv. Oryzae Nadh-Quinone Oxidoreductase Subunits Nuoe and Nuof (pdb code 8x9v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Xanthomonas Oryzae Pv. Oryzae Nadh-Quinone Oxidoreductase Subunits Nuoe and Nuof, PDB code: 8x9v:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 8x9v

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Iron binding site 1 out of 4 in the Crystal Structure of Xanthomonas Oryzae Pv. Oryzae Nadh-Quinone Oxidoreductase Subunits Nuoe and Nuof


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Xanthomonas Oryzae Pv. Oryzae Nadh-Quinone Oxidoreductase Subunits Nuoe and Nuof within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Fe201

b:51.5
occ:1.00
FE1 O:FES201 0.0 51.5 1.0
S1 O:FES201 2.2 49.8 1.0
S2 O:FES201 2.2 48.1 1.0
SG O:CYS105 2.3 50.8 1.0
SG O:CYS100 2.5 50.5 1.0
FE2 O:FES201 2.8 46.1 1.0
CB O:CYS100 3.4 49.1 1.0
CB O:CYS105 3.4 49.4 1.0
N O:CYS105 3.9 49.3 1.0
CA O:CYS105 4.3 52.3 1.0
N O:LEU143 4.6 48.5 1.0
CB O:ASN102 4.6 50.8 1.0
N O:ASN102 4.6 53.4 1.0
SD O:MET151 4.7 57.4 1.0
O O:ASN102 4.7 52.7 1.0
CA O:CYS100 4.7 55.9 1.0
CG O:MET151 4.7 51.9 1.0
CA O:CYS146 4.7 46.8 1.0
SG O:CYS142 4.8 48.5 1.0
CA O:CYS142 4.8 51.6 1.0
SG O:CYS146 4.8 47.9 1.0
C O:CYS100 4.8 47.9 1.0
C O:ASN102 4.8 49.2 1.0
CA O:ASN102 4.9 50.0 1.0
CB O:SER104 5.0 49.2 1.0
CB O:CYS146 5.0 53.5 1.0
O O:CYS100 5.0 46.6 1.0
C O:SER104 5.0 49.1 1.0

Iron binding site 2 out of 4 in 8x9v

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Iron binding site 2 out of 4 in the Crystal Structure of Xanthomonas Oryzae Pv. Oryzae Nadh-Quinone Oxidoreductase Subunits Nuoe and Nuof


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Xanthomonas Oryzae Pv. Oryzae Nadh-Quinone Oxidoreductase Subunits Nuoe and Nuof within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Fe201

b:46.1
occ:1.00
FE2 O:FES201 0.0 46.1 1.0
S2 O:FES201 2.2 48.1 1.0
S1 O:FES201 2.2 49.8 1.0
SG O:CYS146 2.2 47.9 1.0
SG O:CYS142 2.5 48.5 1.0
FE1 O:FES201 2.8 51.5 1.0
CB O:CYS146 3.2 53.5 1.0
CB O:CYS142 3.5 49.3 1.0
CA O:CYS146 3.6 46.8 1.0
N O:CYS146 3.8 45.7 1.0
N O:ALA144 4.1 49.4 1.0
N O:LEU143 4.1 48.5 1.0
CA O:CYS142 4.1 51.6 1.0
N O:ALA145 4.2 49.0 1.0
N F:GLY103 4.3 53.0 1.0
C O:CYS142 4.4 52.6 1.0
SG O:CYS100 4.5 50.5 1.0
C O:ALA145 4.5 50.7 1.0
CA O:ALA144 4.6 45.2 1.0
OG O:SER104 4.6 58.3 1.0
CB O:SER104 4.8 49.2 1.0
SG O:CYS105 4.8 50.8 1.0
C O:ALA144 4.8 47.3 1.0
CA F:GLY103 4.8 46.6 1.0
C O:LEU143 4.9 50.0 1.0
CA O:ALA145 5.0 48.2 1.0

Iron binding site 3 out of 4 in 8x9v

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Iron binding site 3 out of 4 in the Crystal Structure of Xanthomonas Oryzae Pv. Oryzae Nadh-Quinone Oxidoreductase Subunits Nuoe and Nuof


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Xanthomonas Oryzae Pv. Oryzae Nadh-Quinone Oxidoreductase Subunits Nuoe and Nuof within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:51.4
occ:1.00
FE1 D:FES201 0.0 51.4 1.0
S2 D:FES201 2.2 49.1 1.0
S1 D:FES201 2.2 47.8 1.0
SG D:CYS105 2.3 48.9 1.0
SG D:CYS100 2.5 50.9 1.0
FE2 D:FES201 2.9 45.3 1.0
CB D:CYS100 3.3 47.6 1.0
CB D:CYS105 3.4 47.5 1.0
N D:CYS105 3.9 43.0 1.0
CA D:CYS105 4.2 47.7 1.0
CG D:MET151 4.3 44.5 1.0
N D:LEU143 4.5 46.9 1.0
O D:ASN102 4.6 49.8 1.0
SD D:MET151 4.6 59.3 1.0
CA D:CYS100 4.6 47.9 1.0
CA D:CYS142 4.7 49.2 1.0
N D:ASN102 4.7 47.9 1.0
SG D:CYS146 4.7 47.8 1.0
SG D:CYS142 4.7 76.1 1.0
C D:CYS100 4.8 48.5 1.0
CB D:ASN102 4.8 50.5 1.0
CB D:CYS142 4.8 49.6 1.0
CA D:CYS146 4.8 51.0 1.0
C D:ASN102 4.8 51.7 1.0
O D:CYS100 5.0 46.6 1.0

Iron binding site 4 out of 4 in 8x9v

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Iron binding site 4 out of 4 in the Crystal Structure of Xanthomonas Oryzae Pv. Oryzae Nadh-Quinone Oxidoreductase Subunits Nuoe and Nuof


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Xanthomonas Oryzae Pv. Oryzae Nadh-Quinone Oxidoreductase Subunits Nuoe and Nuof within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:45.3
occ:1.00
FE2 D:FES201 0.0 45.3 1.0
S1 D:FES201 2.2 47.8 1.0
S2 D:FES201 2.2 49.1 1.0
SG D:CYS142 2.2 76.1 1.0
SG D:CYS146 2.3 47.8 1.0
FE1 D:FES201 2.9 51.4 1.0
CB D:CYS142 3.1 49.6 1.0
CB D:CYS146 3.5 51.2 1.0
CA D:CYS142 3.8 49.2 1.0
CA D:CYS146 3.8 51.0 1.0
N D:LEU143 3.9 46.9 1.0
N D:CYS146 3.9 46.5 1.0
N D:ALA144 4.1 45.0 1.0
C D:CYS142 4.2 48.1 1.0
N C:GLY103 4.3 47.8 1.0
SG D:CYS100 4.3 50.9 1.0
N D:ALA145 4.3 50.5 1.0
C D:ALA145 4.7 45.7 1.0
CA D:ALA144 4.7 48.8 1.0
OG D:SER104 4.8 50.6 1.0
CB D:SER104 4.9 47.8 1.0
C D:LEU143 4.9 50.1 1.0
SG D:CYS105 4.9 48.9 1.0
CA D:LEU143 4.9 53.8 1.0
CA C:GLY103 5.0 46.4 1.0

Reference:

L.Li, T.Ran, W.Wang, F.Zhang. Nadh-Quinone Oxidoreductase Subunits Nuoe and Nuof To Be Published.
Page generated: Fri Aug 8 00:50:24 2025

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