Iron in PDB 8xo0: Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation

All present enzymatic activity of Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation:
7.1.1.2;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation (pdb code 8xo0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation, PDB code: 8xo0:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:29.6 occ:1.00 FE1 B:SF4301 0.0 29.6 1.0 S2 B:SF4301 2.1 29.6 1.0 S4 B:SF4301 2.1 29.6 1.0 S3 B:SF4301 2.1 29.6 1.0 SG B:CYS99 2.6 29.5 1.0 FE4 B:SF4301 3.0 29.6 1.0 FE2 B:SF4301 3.0 29.6 1.0 FE3 B:SF4301 3.0 29.6 1.0 O B:ALA98 3.1 30.6 1.0 S1 B:SF4301 3.7 29.6 1.0 NE2 D:HIS223 3.9 28.4 1.0 C B:ALA98 4.1 30.6 1.0 CB B:CYS99 4.2 29.5 1.0 SG B:CYS100 4.3 30.1 1.0 CD2 D:HIS223 4.3 28.4 1.0 CB B:ALA98 4.4 30.6 1.0 SG B:CYS164 4.5 29.0 1.0 O B:CYS99 4.5 29.5 1.0 C B:CYS99 4.6 29.5 1.0 CG D:ARG138 4.6 28.5 1.0 CD D:ARG138 4.6 28.5 1.0 O B:CYS194 4.8 29.3 1.0 SG B:CYS194 4.8 29.3 1.0 NE D:ARG138 4.8 28.5 1.0 CA B:CYS99 4.8 29.5 1.0 NH1 D:ARG118 4.9 30.0 1.0 CA B:ALA98 4.9 30.6 1.0 N B:CYS99 4.9 29.5 1.0

Iron binding site 2 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:29.6 occ:1.00 FE2 B:SF4301 0.0 29.6 1.0 SG B:CYS164 1.7 29.0 1.0 S3 B:SF4301 2.1 29.6 1.0 S1 B:SF4301 2.1 29.6 1.0 S4 B:SF4301 2.1 29.6 1.0 CB B:CYS164 2.4 29.0 1.0 FE3 B:SF4301 3.0 29.6 1.0 FE4 B:SF4301 3.0 29.6 1.0 FE1 B:SF4301 3.0 29.6 1.0 CA B:CYS164 3.6 29.0 1.0 S2 B:SF4301 3.7 29.6 1.0 N B:CYS164 3.7 29.0 1.0 OG1 B:THR136 3.9 30.6 1.0 CB B:ALA98 4.5 30.6 1.0 SG B:CYS194 4.5 29.3 1.0 O B:ALA98 4.7 30.6 1.0 C B:CYS164 4.8 29.0 1.0 O B:CYS194 4.8 29.3 1.0 SG B:CYS100 4.8 30.1 1.0 C B:SER163 4.9 28.4 1.0 N B:THR136 4.9 30.6 1.0 OG B:SER163 4.9 28.4 1.0 CE2 B:TYR171 5.0 29.3 1.0

Iron binding site 3 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:29.6 occ:1.00 FE3 B:SF4301 0.0 29.6 1.0 SG B:CYS194 2.0 29.3 1.0 S4 B:SF4301 2.1 29.6 1.0 S2 B:SF4301 2.1 29.6 1.0 S1 B:SF4301 2.1 29.6 1.0 O B:CYS194 2.9 29.3 1.0 FE2 B:SF4301 3.0 29.6 1.0 FE4 B:SF4301 3.0 29.6 1.0 FE1 B:SF4301 3.0 29.6 1.0 C B:CYS194 3.1 29.3 1.0 CB B:CYS194 3.1 29.3 1.0 CA B:CYS194 3.2 29.3 1.0 S3 B:SF4301 3.7 29.6 1.0 NE D:ARG138 3.9 28.5 1.0 N B:PRO195 4.0 28.6 1.0 SG B:CYS164 4.2 29.0 1.0 CD D:ARG138 4.4 28.5 1.0 CD2 D:HIS223 4.5 28.4 1.0 N B:CYS194 4.7 29.3 1.0 OG B:SER163 4.7 28.4 1.0 SG B:CYS100 4.8 30.1 1.0 CA B:PRO195 4.8 28.6 1.0 CD B:PRO195 4.8 28.6 1.0 CZ D:ARG138 4.9 28.5 1.0 NH2 D:ARG138 4.9 28.5 1.0 O B:GLY193 5.0 27.5 1.0

Iron binding site 4 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:29.6 occ:1.00 FE4 B:SF4301 0.0 29.6 1.0 SG B:CYS100 2.0 30.1 1.0 S1 B:SF4301 2.1 29.6 1.0 S3 B:SF4301 2.1 29.6 1.0 S2 B:SF4301 2.1 29.6 1.0 O B:CYS194 2.8 29.3 1.0 FE3 B:SF4301 3.0 29.6 1.0 FE2 B:SF4301 3.0 29.6 1.0 FE1 B:SF4301 3.0 29.6 1.0 S4 B:SF4301 3.7 29.6 1.0 CB B:CYS100 3.7 30.1 1.0 O B:ALA98 3.7 30.6 1.0 C B:CYS194 3.9 29.3 1.0 CA B:GLY162 4.1 28.7 1.0 CD B:PRO196 4.5 28.7 1.0 CB B:CYS164 4.5 29.0 1.0 CA B:CYS100 4.5 30.1 1.0 SG B:CYS164 4.7 29.0 1.0 N B:CYS100 4.7 30.1 1.0 CA B:PRO195 4.7 28.6 1.0 SG B:CYS99 4.7 29.5 1.0 N B:PRO195 4.8 28.6 1.0 CA B:CYS194 4.8 29.3 1.0 CA B:GLY135 4.8 30.1 1.0 N B:CYS164 4.8 29.0 1.0 C B:GLY162 4.9 28.7 1.0 N B:SER163 4.9 28.4 1.0 C B:ALA98 4.9 30.6 1.0 N B:GLY135 5.0 30.1 1.0 SG B:CYS194 5.0 29.3 1.0 O B:CYS99 5.0 29.5 1.0 C B:CYS99 5.0 29.5 1.0

Iron binding site 5 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe301 b:61.8 occ:1.00 FE1 E:FES301 0.0 61.8 1.0 SG E:CYS134 1.9 56.0 1.0 SG E:CYS139 2.0 56.5 1.0 S1 E:FES301 2.2 61.8 1.0 S2 E:FES301 2.2 61.8 1.0 CB E:CYS134 3.1 56.0 1.0 FE2 E:FES301 3.1 61.8 1.0 CB E:CYS139 3.4 56.5 1.0 CA E:CYS175 4.0 54.4 1.0 N E:CYS139 4.1 56.5 1.0 CE E:MET184 4.1 59.2 1.0 N E:LEU176 4.2 56.3 1.0 CA E:CYS139 4.3 56.5 1.0 CA E:CYS134 4.4 56.0 1.0 C E:CYS134 4.6 56.0 1.0 SG E:CYS175 4.6 54.4 1.0 CB E:CYS175 4.6 54.4 1.0 C E:CYS175 4.7 54.4 1.0 O E:CYS134 4.7 56.0 1.0 CB E:PRO138 4.7 55.6 1.0 SG E:CYS179 4.7 58.0 1.0 N E:CYS175 4.8 54.4 1.0 O E:ALA182 4.8 59.5 1.0 O E:THR136 4.9 53.8 1.0 CB E:THR136 4.9 53.8 1.0 N E:THR136 4.9 53.8 1.0 O E:GLU174 5.0 53.4 1.0

Iron binding site 6 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe301 b:61.8 occ:1.00 FE2 E:FES301 0.0 61.8 1.0 SG E:CYS179 1.6 58.0 1.0 S1 E:FES301 2.2 61.8 1.0 S2 E:FES301 2.2 61.8 1.0 CB E:CYS179 2.9 58.0 1.0 SG E:CYS175 3.1 54.4 1.0 FE1 E:FES301 3.1 61.8 1.0 CG E:PRO138 3.5 55.6 1.0 CA E:CYS179 3.5 58.0 1.0 CB E:PRO138 3.5 55.6 1.0 N F:GLY123 3.6 55.9 1.0 N E:CYS179 4.0 58.0 1.0 CA F:GLY123 4.2 55.9 1.0 CB E:CYS175 4.2 54.4 1.0 CD E:PRO138 4.3 55.6 1.0 SG E:CYS139 4.3 56.5 1.0 O E:GLY177 4.5 56.5 1.0 C E:ALA178 4.5 58.1 1.0 O E:ALA178 4.5 58.1 1.0 C E:GLY177 4.6 56.5 1.0 N E:GLY177 4.6 56.5 1.0 CA E:CYS175 4.6 54.4 1.0 C F:PRO122 4.7 53.9 1.0 SG E:CYS134 4.7 56.0 1.0 CA E:GLY177 4.7 56.5 1.0 CA F:PRO122 4.9 53.9 1.0 C E:CYS179 4.9 58.0 1.0 N E:LEU176 4.9 56.3 1.0 CA E:PRO138 4.9 55.6 1.0 C F:GLY123 4.9 55.9 1.0

Iron binding site 7 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:44.0 occ:1.00 FE1 F:SF4502 0.0 44.0 1.0 SG F:CYS379 1.6 43.1 1.0 S3 F:SF4502 2.1 44.0 1.0 S2 F:SF4502 2.1 44.0 1.0 S4 F:SF4502 2.1 44.0 1.0 FE4 F:SF4502 3.0 44.0 1.0 FE2 F:SF4502 3.0 44.0 1.0 FE3 F:SF4502 3.0 44.0 1.0 CB F:CYS379 3.2 43.1 1.0 N F:CYS379 3.7 43.1 1.0 S1 F:SF4502 3.7 44.0 1.0 N F:GLY380 3.7 41.1 1.0 N F:GLN381 3.8 40.7 1.0 CA F:CYS379 3.9 43.1 1.0 CB F:GLN381 4.1 40.7 1.0 C F:CYS379 4.2 43.1 1.0 CD F:PRO223 4.3 44.5 1.0 N F:CYS382 4.4 40.3 1.0 CA F:GLN381 4.5 40.7 1.0 SG F:CYS425 4.6 45.6 1.0 SG F:CYS382 4.7 40.3 1.0 C F:GLY380 4.7 41.1 1.0 C F:SER378 4.7 43.6 1.0 CA F:GLY380 4.7 41.1 1.0 CG F:PRO223 4.7 44.5 1.0 C F:GLN381 5.0 40.7 1.0 OE1 F:GLN381 5.0 40.7 1.0

Iron binding site 8 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:44.0 occ:1.00 FE2 F:SF4502 0.0 44.0 1.0 SG F:CYS382 1.9 40.3 1.0 S3 F:SF4502 2.1 44.0 1.0 S4 F:SF4502 2.1 44.0 1.0 S1 F:SF4502 2.1 44.0 1.0 CB F:CYS382 2.8 40.3 1.0 FE3 F:SF4502 3.0 44.0 1.0 FE1 F:SF4502 3.0 44.0 1.0 FE4 F:SF4502 3.0 44.0 1.0 N F:CYS382 3.5 40.3 1.0 S2 F:SF4502 3.7 44.0 1.0 CA F:CYS382 3.7 40.3 1.0 CB F:CYS385 3.7 40.0 1.0 N F:ILE424 4.2 41.6 1.0 O F:CYS382 4.4 40.3 1.0 CB F:ILE424 4.4 41.6 1.0 SG F:CYS379 4.4 43.1 1.0 C F:CYS382 4.4 40.3 1.0 N F:CYS425 4.5 45.6 1.0 CG2 F:THR423 4.6 40.9 1.0 SG F:CYS425 4.6 45.6 1.0 SG F:CYS385 4.6 40.0 1.0 CB F:THR423 4.7 40.9 1.0 C F:GLN381 4.7 40.7 1.0 CA F:ILE424 4.8 41.6 1.0 N F:CYS385 4.9 40.0 1.0 CA F:CYS385 4.9 40.0 1.0 N F:GLN381 4.9 40.7 1.0 CA F:THR423 5.0 40.9 1.0

Iron binding site 9 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:44.0 occ:1.00 FE3 F:SF4502 0.0 44.0 1.0 S1 F:SF4502 2.1 44.0 1.0 S2 F:SF4502 2.1 44.0 1.0 S4 F:SF4502 2.1 44.0 1.0 SG F:CYS385 2.5 40.0 1.0 CB F:CYS385 3.0 40.0 1.0 FE2 F:SF4502 3.0 44.0 1.0 FE1 F:SF4502 3.0 44.0 1.0 FE4 F:SF4502 3.0 44.0 1.0 CB F:SER378 3.5 43.6 1.0 CD2 F:LEU427 3.7 47.2 1.0 S3 F:SF4502 3.7 44.0 1.0 SG F:CYS382 4.2 40.3 1.0 SG F:CYS425 4.2 45.6 1.0 SG F:CYS379 4.3 43.1 1.0 CA F:SER378 4.3 43.6 1.0 OG F:SER378 4.3 43.6 1.0 CB F:LEU427 4.4 47.2 1.0 N F:CYS379 4.4 43.1 1.0 CG F:LEU427 4.4 47.2 1.0 CA F:CYS385 4.5 40.0 1.0 N F:GLY428 4.6 45.6 1.0 C F:SER378 4.7 43.6 1.0 N F:GLY380 4.8 41.1 1.0 C F:CYS385 5.0 40.0 1.0

Iron binding site 10 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Respiratory Complex Peripheral Arm of Ci, Close Form B, Focus-Refined Map of Type I, Perk -/- Mouse Under Cold Acclimation within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:44.0 occ:1.00 FE4 F:SF4502 0.0 44.0 1.0 SG F:CYS425 1.7 45.6 1.0 S2 F:SF4502 2.1 44.0 1.0 S1 F:SF4502 2.1 44.0 1.0 S3 F:SF4502 2.1 44.0 1.0 CB F:CYS425 2.8 45.6 1.0 FE1 F:SF4502 3.0 44.0 1.0 FE3 F:SF4502 3.0 44.0 1.0 FE2 F:SF4502 3.0 44.0 1.0 N F:CYS425 3.5 45.6 1.0 CA F:CYS425 3.7 45.6 1.0 S4 F:SF4502 3.7 44.0 1.0 C F:CYS425 4.2 45.6 1.0 CG F:PRO223 4.2 44.5 1.0 CB F:LEU427 4.4 47.2 1.0 CD1 F:ILE205 4.4 47.3 1.0 SG F:CYS379 4.4 43.1 1.0 O F:CYS425 4.5 45.6 1.0 N F:LEU427 4.5 47.2 1.0 C F:ILE424 4.7 41.6 1.0 SG F:CYS382 4.8 40.3 1.0 N F:ALA426 4.8 48.8 1.0 CD F:PRO223 4.8 44.5 1.0 CB F:PRO223 4.8 44.5 1.0 N F:GLY428 4.9 45.6 1.0

Y.C.Shin, P.Latorre-Muro, A.Djurabekova, O.Zdorevskyi, C.F.Bennett, N.Burger, K.Song, C.Xu, J.A.Paulo, S.P.Gygi, V.Sharma, M.Liao, P.Puigserver. Structural Basis of Respiratory Complex Adaptation to Cold Temperatures. Cell 2024.
ISSN: ISSN 1097-4172
PubMed: 39395414
DOI: 10.1016/J.CELL.2024.09.029