Iron in PDB 8xp6: 2OG-Fe(II) Oxygenase-Cold

Protein crystallography data

The structure of 2OG-Fe(II) Oxygenase-Cold, PDB code: 8xp6 was solved by B.Zhang, J.Shi, Y.Zhang, H.M.Ge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.75 / 1.40
Space group P 21 2 21
Cell size a, b, c (Å), α, β, γ (°) 59.55, 62.75, 92.14, 90, 90, 90
R / Rfree (%) 15.9 / 17.4

Iron Binding Sites:

The binding sites of Iron atom in the 2OG-Fe(II) Oxygenase-Cold (pdb code 8xp6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the 2OG-Fe(II) Oxygenase-Cold, PDB code: 8xp6:

Iron binding site 1 out of 1 in 8xp6

Go back to Iron Binding Sites List in 8xp6
Iron binding site 1 out of 1 in the 2OG-Fe(II) Oxygenase-Cold


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of 2OG-Fe(II) Oxygenase-Cold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:19.1
occ:1.00
OD2 A:ASP115 2.0 11.8 1.0
O A:HOH778 2.0 15.0 1.0
O A:HOH806 2.1 14.1 1.0
O A:HOH632 2.2 14.1 1.0
NE2 A:HIS203 2.2 8.8 1.0
NE2 A:HIS113 2.2 9.2 1.0
CE1 A:HIS203 3.1 9.5 1.0
CE1 A:HIS113 3.1 8.9 1.0
CG A:ASP115 3.2 11.2 1.0
CD2 A:HIS203 3.2 9.6 1.0
CD2 A:HIS113 3.3 8.7 1.0
O A:HOH865 3.6 32.0 1.0
OD1 A:ASP115 3.7 16.7 1.0
O A:HOH949 4.2 20.3 1.0
ND1 A:HIS203 4.2 7.9 1.0
ND1 A:HIS113 4.3 9.6 1.0
CG A:HIS203 4.3 8.0 1.0
CG A:HIS113 4.4 7.5 1.0
CB A:ASP115 4.4 9.4 1.0
O A:HOH1002 4.4 14.8 1.0
O A:HOH542 4.6 28.4 1.0
OE1 A:GLN110 4.6 14.8 1.0
O A:HOH996 5.0 22.6 1.0
O A:HOH846 5.0 31.2 1.0

Reference:

J.Shi, H.M.Ge. Biosynthesis of Collinodins To Be Published.
Page generated: Sat Feb 8 18:44:46 2025

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