Iron in PDB 8xpf: 2OG-Fe(II) Oxygenase-Cold in Complex with Collinodins

The structure of 2OG-Fe(II) Oxygenase-Cold in Complex with Collinodins, PDB code: 8xpf was solved by B.Zhang, J.Shi, Y.Zhang, H.M.Ge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.54 / 1.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	121.363, 61.01, 56.346, 90, 112.6, 90
R / Rfree (%)	16.5 / 18.4

The binding sites of Iron atom in the 2OG-Fe(II) Oxygenase-Cold in Complex with Collinodins (pdb code 8xpf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the 2OG-Fe(II) Oxygenase-Cold in Complex with Collinodins, PDB code: 8xpf:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the 2OG-Fe(II) Oxygenase-Cold in Complex with Collinodins


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of 2OG-Fe(II) Oxygenase-Cold in Complex with Collinodins within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe402 b:19.1 occ:1.00 OD2 A:ASP115 2.0 21.2 1.0 O A:HOH665 2.1 27.9 1.0 NE2 A:HIS203 2.1 19.8 1.0 O5 A:AKG401 2.1 26.4 1.0 O1 A:AKG401 2.2 27.0 1.0 NE2 A:HIS113 2.2 19.9 1.0 C1 A:AKG401 2.8 32.6 1.0 C2 A:AKG401 2.8 31.8 1.0 CG A:ASP115 3.1 22.1 1.0 CE1 A:HIS203 3.1 18.9 1.0 CE1 A:HIS113 3.1 20.2 1.0 CD2 A:HIS203 3.1 20.7 1.0 CD2 A:HIS113 3.2 19.4 1.0 OD1 A:ASP115 3.5 24.7 1.0 O2 A:AKG401 4.1 37.3 1.0 ND1 A:HIS203 4.2 17.2 1.0 ND1 A:HIS113 4.2 20.1 1.0 CG A:HIS203 4.2 18.0 1.0 CG A:HIS113 4.3 18.3 1.0 C3 A:AKG401 4.3 31.3 1.0 CB A:ASP115 4.3 19.2 1.0 H31 A:AKG401 4.6 37.6 1.0 O A:HOH787 4.6 44.7 1.0 O A:HOH549 4.7 36.8 1.0 H32 A:AKG401 4.8 37.6 1.0 O A:HOH774 4.8 39.4 1.0 OE1 A:GLN110 4.8 27.9 1.0 CZ A:PHE197 4.8 19.5 1.0 O A:HOH776 4.9 44.6 1.0 CE1 A:PHE197 4.9 19.1 1.0

Iron binding site 2 out of 2 in the 2OG-Fe(II) Oxygenase-Cold in Complex with Collinodins


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of 2OG-Fe(II) Oxygenase-Cold in Complex with Collinodins within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe403 b:24.5 occ:1.00 NE2 A:HIS158 2.0 22.0 1.0 O A:HOH540 2.1 28.1 1.0 CE1 A:HIS158 3.0 24.5 1.0 CD2 A:HIS158 3.0 22.7 1.0 O A:HOH785 4.1 35.6 1.0 ND1 A:HIS158 4.1 22.1 1.0 CG A:HIS158 4.1 22.2 1.0 O A:ALA11 4.3 26.4 1.0 O A:HOH807 4.6 26.7 1.0

J.Shi, H.M.Ge. Biosynthesis of Collinodins To Be Published.