Iron in PDB 8xzv: Architecture of the Spinach Plastid-Encoded Rna Polymerase

All present enzymatic activity of Architecture of the Spinach Plastid-Encoded Rna Polymerase:
1.15.1.1; 2.7.7.6;

The binding sites of Iron atom in the Architecture of the Spinach Plastid-Encoded Rna Polymerase (pdb code 8xzv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Architecture of the Spinach Plastid-Encoded Rna Polymerase, PDB code: 8xzv:

Iron binding site 1 out of 1 in the Architecture of the Spinach Plastid-Encoded Rna Polymerase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Architecture of the Spinach Plastid-Encoded Rna Polymerase within 5.0Å range: probe atom residue distance (Å) B Occ L:Fe301 b:84.7 occ:1.00 NE2 L:HIS81 2.1 87.1 1.0 OD2 L:ASP232 2.2 76.5 1.0 NE2 L:HIS236 2.4 75.4 1.0 NE2 L:HIS133 2.5 86.0 1.0 CE1 L:HIS81 2.7 87.1 1.0 CE1 L:HIS133 3.2 86.0 1.0 CG L:ASP232 3.2 76.5 1.0 CE1 L:HIS236 3.3 75.4 1.0 CD2 L:HIS236 3.4 75.4 1.0 CD2 L:HIS81 3.4 87.1 1.0 CD2 L:HIS133 3.4 86.0 1.0 OD1 L:ASP232 3.6 76.5 1.0 ND1 L:HIS81 3.9 87.1 1.0 CB L:TRP234 4.1 69.9 1.0 CZ2 L:TRP182 4.1 76.3 1.0 CG L:TRP234 4.2 69.9 1.0 ND1 L:HIS133 4.3 86.0 1.0 CG L:HIS81 4.3 87.1 1.0 CG L:HIS133 4.4 86.0 1.0 CH2 L:TRP182 4.4 76.3 1.0 ND1 L:HIS236 4.5 75.4 1.0 CG L:HIS236 4.5 75.4 1.0 CB L:ASP232 4.5 76.5 1.0 NE2 L:GLN129 4.5 85.2 1.0 CD1 L:TRP234 4.7 69.9 1.0 CD2 L:TRP234 4.7 69.9 1.0 CE2 L:TRP182 5.0 76.3 1.0

T.Wang, G.L.Wang, Y.Fang, Y.Zhang, W.Peng, Y.Zhou, A.Zhang, L.J.Yu, C.Lu. Architecture of the Spinach Plastid-Encoded Rna Polymerase. Nat Commun V. 15 9838 2024.
ISSN: ESSN 2041-1723
PubMed: 39537621
DOI: 10.1038/S41467-024-54266-2