Iron in PDB 8z83: Photosynthetic LH1-Rc Complex From the Purple Bacterium Halorhodospira Halophila

The structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Halorhodospira Halophila also contains other interesting chemical elements:

Magnesium

(Mg)

46 atoms

The binding sites of Iron atom in the Photosynthetic LH1-Rc Complex From the Purple Bacterium Halorhodospira Halophila (pdb code 8z83). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the Photosynthetic LH1-Rc Complex From the Purple Bacterium Halorhodospira Halophila, PDB code: 8z83:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in the Photosynthetic LH1-Rc Complex From the Purple Bacterium Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Photosynthetic LH1-Rc Complex From the Purple Bacterium Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe401 b:52.6 occ:1.00 FE C:HEC401 0.0 52.6 1.0 NE2 C:HIS112 1.8 46.2 1.0 ND C:HEC401 1.9 43.9 1.0 NA C:HEC401 2.0 42.6 1.0 NC C:HEC401 2.1 37.8 1.0 NB C:HEC401 2.1 42.0 1.0 SD C:MET95 2.6 47.2 1.0 CE1 C:HIS112 2.7 43.5 1.0 CD2 C:HIS112 2.8 40.4 1.0 C4D C:HEC401 2.9 41.4 1.0 C1D C:HEC401 2.9 40.8 1.0 C1A C:HEC401 3.0 40.8 1.0 C4A C:HEC401 3.0 41.1 1.0 C4C C:HEC401 3.0 37.1 1.0 C1B C:HEC401 3.1 39.1 1.0 C4B C:HEC401 3.1 41.5 1.0 C1C C:HEC401 3.1 40.3 1.0 CHA C:HEC401 3.3 40.1 1.0 CHD C:HEC401 3.4 39.0 1.0 CHB C:HEC401 3.5 37.8 1.0 CHC C:HEC401 3.5 40.4 1.0 CE C:MET95 3.6 35.6 1.0 CG C:MET95 3.7 37.7 1.0 ND1 C:HIS112 3.8 40.1 1.0 CG C:HIS112 3.9 40.1 1.0 C3D C:HEC401 4.1 39.8 1.0 C2D C:HEC401 4.1 40.7 1.0 C2A C:HEC401 4.2 41.5 1.0 C3A C:HEC401 4.2 41.4 1.0 C3C C:HEC401 4.3 41.0 1.0 C2C C:HEC401 4.3 39.5 1.0 C2B C:HEC401 4.3 40.1 1.0 C3B C:HEC401 4.3 39.1 1.0 CB C:MET95 4.4 32.7 1.0

Iron binding site 2 out of 5 in the Photosynthetic LH1-Rc Complex From the Purple Bacterium Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Photosynthetic LH1-Rc Complex From the Purple Bacterium Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe402 b:44.0 occ:1.00 FE C:HEC402 0.0 44.0 1.0 ND C:HEC402 1.9 31.4 1.0 NA C:HEC402 2.0 30.0 1.0 NC C:HEC402 2.1 29.3 1.0 NB C:HEC402 2.1 31.9 1.0 NE2 C:HIS157 2.4 22.2 1.0 SD C:MET131 2.7 32.4 1.0 C4D C:HEC402 2.9 25.4 1.0 C1D C:HEC402 2.9 30.3 1.0 C1A C:HEC402 3.0 28.9 1.0 C4C C:HEC402 3.0 26.9 1.0 C4A C:HEC402 3.1 29.5 1.0 C1B C:HEC402 3.1 30.1 1.0 C4B C:HEC402 3.1 28.8 1.0 C1C C:HEC402 3.1 29.6 1.0 CG C:MET131 3.3 23.1 1.0 CD2 C:HIS157 3.3 25.1 1.0 CHA C:HEC402 3.3 27.9 1.0 CHD C:HEC402 3.4 29.1 1.0 CE1 C:HIS157 3.4 24.9 1.0 CE C:MET131 3.5 24.5 1.0 CHB C:HEC402 3.5 28.1 1.0 CHC C:HEC402 3.5 27.6 1.0 CB C:MET131 4.1 23.6 1.0 C3D C:HEC402 4.1 27.9 1.0 C2D C:HEC402 4.1 29.4 1.0 C2A C:HEC402 4.2 27.3 1.0 C3A C:HEC402 4.2 30.8 1.0 C3C C:HEC402 4.3 27.3 1.0 C2C C:HEC402 4.3 28.3 1.0 C2B C:HEC402 4.3 27.2 1.0 C3B C:HEC402 4.3 28.2 1.0 CG C:HIS157 4.5 26.3 1.0 ND1 C:HIS157 4.5 25.1 1.0

Iron binding site 3 out of 5 in the Photosynthetic LH1-Rc Complex From the Purple Bacterium Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Photosynthetic LH1-Rc Complex From the Purple Bacterium Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe403 b:35.7 occ:1.00 FE C:HEC403 0.0 35.7 1.0 ND C:HEC403 1.9 24.6 1.0 NA C:HEC403 2.0 15.1 1.0 NC C:HEC403 2.1 15.9 1.0 NB C:HEC403 2.1 19.3 1.0 NE2 C:HIS256 2.3 12.1 1.0 SD C:MET241 2.7 14.1 1.0 C4D C:HEC403 2.9 10.4 1.0 C1D C:HEC403 2.9 13.7 1.0 CD2 C:HIS256 2.9 7.1 1.0 C1A C:HEC403 3.0 14.2 1.0 C4C C:HEC403 3.0 13.8 1.0 C4A C:HEC403 3.1 5.5 1.0 C4B C:HEC403 3.1 14.7 1.0 C1B C:HEC403 3.1 12.7 1.0 C1C C:HEC403 3.1 15.7 1.0 CHA C:HEC403 3.3 9.3 1.0 CHD C:HEC403 3.4 13.1 1.0 CG C:MET241 3.4 11.2 1.0 CE1 C:HIS256 3.4 12.7 1.0 CHB C:HEC403 3.5 10.1 1.0 CHC C:HEC403 3.5 13.2 1.0 CE C:MET241 3.7 11.9 1.0 CB C:MET241 4.1 10.0 1.0 C3D C:HEC403 4.1 12.1 1.0 C2D C:HEC403 4.1 8.6 1.0 CG C:HIS256 4.2 12.7 1.0 C2A C:HEC403 4.2 14.6 1.0 C3A C:HEC403 4.2 11.3 1.0 C3C C:HEC403 4.3 15.8 1.0 C2C C:HEC403 4.3 12.0 1.0 C2B C:HEC403 4.3 11.7 1.0 C3B C:HEC403 4.3 16.4 1.0 ND1 C:HIS256 4.3 12.6 1.0

Iron binding site 4 out of 5 in the Photosynthetic LH1-Rc Complex From the Purple Bacterium Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Photosynthetic LH1-Rc Complex From the Purple Bacterium Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe404 b:34.2 occ:1.00 FE C:HEC404 0.0 34.2 1.0 NE2 C:HIS316 1.9 22.7 1.0 ND C:HEC404 1.9 23.1 1.0 NA C:HEC404 2.0 21.5 1.0 NC C:HEC404 2.1 18.6 1.0 NB C:HEC404 2.1 20.1 1.0 NE2 C:HIS145 2.3 14.7 1.0 CE1 C:HIS316 2.7 15.7 1.0 CE1 C:HIS145 2.8 16.8 1.0 C4D C:HEC404 2.9 18.4 1.0 C1D C:HEC404 2.9 19.6 1.0 C1A C:HEC404 2.9 19.2 1.0 CD2 C:HIS316 3.0 20.5 1.0 C4A C:HEC404 3.0 18.7 1.0 C4C C:HEC404 3.0 16.6 1.0 C1B C:HEC404 3.1 21.2 1.0 C4B C:HEC404 3.1 15.6 1.0 C1C C:HEC404 3.1 18.8 1.0 CHA C:HEC404 3.3 16.9 1.0 CHD C:HEC404 3.4 16.7 1.0 CHB C:HEC404 3.5 20.5 1.0 CHC C:HEC404 3.5 17.0 1.0 CD2 C:HIS145 3.6 16.6 1.0 ND1 C:HIS316 3.8 15.5 1.0 CG C:HIS316 4.0 14.6 1.0 ND1 C:HIS145 4.1 21.7 1.0 C3D C:HEC404 4.1 21.6 1.0 C2D C:HEC404 4.1 18.7 1.0 C2A C:HEC404 4.2 18.6 1.0 C3A C:HEC404 4.2 18.7 1.0 C3C C:HEC404 4.3 21.9 1.0 C2C C:HEC404 4.3 21.5 1.0 C2B C:HEC404 4.3 21.7 1.0 C3B C:HEC404 4.3 16.7 1.0 CG C:HIS145 4.5 17.5 1.0

Iron binding site 5 out of 5 in the Photosynthetic LH1-Rc Complex From the Purple Bacterium Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Photosynthetic LH1-Rc Complex From the Purple Bacterium Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ M:Fe401 b:31.4 occ:1.00 OE2 M:GLU234 2.0 26.7 1.0 OE1 M:GLU234 2.1 27.8 1.0 NE2 L:HIS190 2.1 16.0 1.0 NE2 M:HIS219 2.1 17.2 1.0 NE2 M:HIS266 2.2 17.8 1.0 NE2 L:HIS230 2.2 14.3 1.0 CD M:GLU234 2.3 26.6 1.0 CE1 L:HIS190 2.9 15.3 1.0 CE1 M:HIS219 2.9 17.2 1.0 CE1 M:HIS266 3.1 17.6 1.0 CE1 L:HIS230 3.1 13.5 1.0 CD2 M:HIS266 3.2 17.5 1.0 CD2 M:HIS219 3.3 14.4 1.0 CD2 L:HIS230 3.3 12.7 1.0 CD2 L:HIS190 3.3 12.2 1.0 CG M:GLU234 3.8 18.1 1.0 ND1 L:HIS190 4.1 13.9 1.0 ND1 M:HIS219 4.1 9.1 1.0 ND1 M:HIS266 4.2 16.3 1.0 ND1 L:HIS230 4.3 17.9 1.0 CG M:HIS266 4.3 14.2 1.0 CG M:HIS219 4.3 11.5 1.0 CG L:HIS190 4.3 12.7 1.0 CG L:HIS230 4.4 18.6 1.0 CG1 M:ILE223 4.4 12.1 1.0 CG1 L:ILE194 4.6 16.9 1.0 CB M:GLU234 4.7 22.5 1.0 CD1 M:ILE223 4.9 11.1 1.0

K.Tani, R.Kanno, K.V.P.Nagashima, M.Kawakami, N.Hiwatashi, K.Nakata, S.Nagashima, K.Inoue, S.Takaichi, E.R.Purba, M.Hall, L.J.Yu, M.T.Madigan, A.Mizoguchi, B.M.Humbel, Y.Kimura, Z.Y.Wang-Otomo. A Native LH1-Rc-Hipip Supercomplex From An Extremophilic Phototroph. Commun Biol V. 8 42 2025.
ISSN: ESSN 2399-3642
PubMed: 39799244
DOI: 10.1038/S42003-024-07421-W